Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0004500

Physical Location & Seq

Genomic Coordinates Reverse (-)

18882329 .. 18888947

Gene Structure 6619 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g18800.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGCGGTCGTCGAGATTGAGACTGTTCGCGAAGGCCATTTGTGATTCCGCCCGTCATCGTCATCCACATCGCCATCACAGGATTCTACATCCAACTCACGCTCACACCCTCAGCGTTGCAGAGATGCATAGCTTGTCGAAAATGGAAGTAGAAAATGGGGAGGTGAAGAACAAGGAGAAGGTTACCCGTCTTCTTTTCTGCGGATCACATTTTCCTGCTGCTGAAACTTACACAAGGGAATATTTGAAAGACTACCCCTTTATCCAGGTAGATGATGTTCCCCATAAAGATGTGCCTGGTGTTATCCAGAATTACAGTATGTGTATCGTGAAGTTGATGAAGTTAGATTCAGATCTTCTGTCCCGTGCAGAAAAGATGAAGCTTGTACTGCAGTATGGTGTCGGCCTGGAAGGCGTTGACATTGATTCTGCAACTAAGTTTGGAATCAAAGTTGCTAGGATTCCGAGCCATGTAACTGGAAATGCAGCCTCATGTGCCGAAATGGCCATTTATCTGATGTTGGGCCTCCTACGAAAGCAAAATGAGATGCAAATTTCTATAAAGCTGAAGAAGGTTGGGGATCCAGTTGGTGAAACACTGCTTGGAAAAACAGTTTTCATTTTAGGATATGGGAACATTGGAATTGAATTGGCAAAGCGCTTGAGACCGTTTGGTGTGAAAATTATTGCCTCCAAACGGAGTTGGGCCACACAGTCACAAGATTCTTGCCAATCAAATGTTCAAAATTGTTCCACTGAGAATTTGGTTGATGAGAAGTGTGTCCATGAAGATATCCACAAGTTTGCAAGTATTGCAGACATCGTTGTTTGCTGCATAAATTTAAACAGTGAAACAGTTGGCATTGTAAACAAGTCGTTCATATCTTCGATGAGAAAGGGTGCCCTTCTGGTAAATATTGCCCGAGGGGGTCTCCTGGACTATGAAGCTGTTTCATATAACCTAGAGTCTGGCCACTTAGGTGGTTTAGGGATTGATGTTGCTTGGACGGAGCCATTTGATCCTGATGATCCAATTTTGAAGTTCAACAATGTTATCATCACACCTCATGTGGCAGGAGTTACAGAGTATTCTTACAGATCCATGGCTAAGGTAGTTGGCGATGCCGCCATTCAACTTCATGAAGGGAAGCCTTTGACAGGAATTGAGTTTGTCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003008 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006081 GO:0006082 GO:0007588 GO:0008150 GO:0008152 GO:0008465 GO:0009987 GO:0016043 GO:0016491 GO:0016614 GO:0016616 GO:0016618 GO:0019752 GO:0022607 GO:0030267 GO:0031406 GO:0032501 GO:0032787 GO:0036094 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043177 GO:0043436 GO:0043648 GO:0043933 GO:0044085 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046487 GO:0046983 GO:0048037 GO:0050661 GO:0050662 GO:0051259 GO:0051287 GO:0055114 GO:0065003 GO:0070402 GO:0071704 GO:0071840 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2-Hacid_dh 2-Hacid_dh_C

Protein Analysis

393

Amino Acids

43.4

Weight (kDa)

8.27

Isoelectric Point (pI)

34.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72190
fragaria_vesca	FvH4_5g31330 FvH4_5g31330 FvH4_5g31330 FvH4_5g31330 FvH4_5g31330 FvH4_5g31330 FvH4_5g31330
malus_domestica	MD08G1217300.v1.1
prunus_persica	Prupe.1G556800_v2.0.a1 Prupe.1G556800_v2.0.a1 Prupe.1G556800_v2.0.a1 Prupe.1G556800_v2.0.a1 Prupe.1G556800_v2.0.a1 Prupe.1G556800_v2.0.a1
pyrus_communis	pycom08g18800
rosa_chinensis	RchiOBHm_Chr7g0226521 RchiOBHm_Chr7g0226551
rosa_laevigata	RLG00000001716 RLG00000001719
rosa_multiflora	Rmu_sc0001423.1_g000008
rosa_roxburghii	Rroxscaffold_3G00232710
rosa_rugosa	Rorug07G0237900 Rorug07G0237900 Rorug07G0238000 Rorug07G0238200
rosa_samantha	Rh7BG372200 Rh7BG372500 Rh7DG384300 Rh7DG384500
rosa_wichuraiana	Rw7G032370 Rw7G032390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	899
AccII	CGCG	1 cut(s)	29
AciI	CCGC	4 cut(s)	4, 48, 201, 1125
AclWI	GGATC	6 cut(s)	211, 575, 588, 1013, 1022, 1092
AcoI	YGGCCR	2 cut(s)	504, 970
AcsI	RAATTY	3 cut(s)	552, 760, 838
AcuI	CTGAAG	1 cut(s)	587
AfaI	GTAC	1 cut(s)	387
AfeI	AGCGCT	1 cut(s)	659
AfiI	CCNNNNNNNGG	2 cut(s)	696, 1157
AgsI	TTSAA	6 cut(s)	247, 647, 743, 1039, 1045, 1133
AjnI	CCWGG	4 cut(s)	264, 295, 405, 933
AjuI	GAANNNNNNNTTGG	4 cut(s)	585, 617, 723, 755
AleI	CACNNNNGTG	1 cut(s)	978
AluBI	AGCT	4 cut(s)	132, 382, 565, 947
AluI	AGCT	4 cut(s)	132, 382, 565, 947
Alw26I	GTCTC	3 cut(s)	13, 658, 935
AlwI	GGATC	6 cut(s)	211, 575, 588, 1013, 1022, 1092
Ama87I	CYCGRG	1 cut(s)	921
Aor51HI	AGCGCT	1 cut(s)	659
AoxI	GGCC	6 cut(s)	33, 403, 504, 523, 705, 970
ApeKI	GCWGC	3 cut(s)	218, 485, 831
ApoI	RAATTY	3 cut(s)	552, 760, 838
AspLEI	GCGC	1 cut(s)	660
AspS9I	GGNCC	2 cut(s)	523, 705
AsuHPI	GGTGA	2 cut(s)	175, 602
AvaI	CYCGRG	1 cut(s)	921
BaeGI	GKGCMC	1 cut(s)	904
BalI	TGGCCA	2 cut(s)	506, 972
BamHI	GGATCC	1 cut(s)	580
BanI	GGYRCC	1 cut(s)	899
BbsI	GAAGAC	1 cut(s)	182
BbvCI	CCTCAGC	1 cut(s)	110
BbvI	GCAGC	3 cut(s)	205, 497, 818
BccI	CCATC	1 cut(s)	81
BciT130I	CCWGG	4 cut(s)	266, 297, 407, 935
BcoDI	GTCTC	3 cut(s)	13, 658, 935
BfaI	CTAG	2 cut(s)	456, 962
BfmI	CTRYAG	1 cut(s)	389
BfoI	RGCGCY	1 cut(s)	661
BglI	GCCNNNNNGGC	2 cut(s)	411, 503
BglII	AGATCT	1 cut(s)	352
BisI	GCNGC	4 cut(s)	219, 486, 832, 1125
BlsI	GCNGC	4 cut(s)	220, 487, 833, 1126
Bme1390I	CCNGG	4 cut(s)	266, 297, 407, 935
BmeT110I	CYCGRG	1 cut(s)	921
BmgT120I	GGNCC	2 cut(s)	523, 705
BmiI	GGNNCC	3 cut(s)	582, 901, 1011
BmrFI	CCNGG	4 cut(s)	266, 297, 407, 935
BmsI	GCATC	3 cut(s)	114, 537, 1111
BpiI	GAAGAC	1 cut(s)	182
BplI	GAGNNNNNCTC	2 cut(s)	915, 947
Bpu10I	CCTNAGC	2 cut(s)	110, 1107
BpuEI	CTTGAG	1 cut(s)	682
BsaBI	GATNNNNATC	1 cut(s)	351
BsaI	GGTCTC	2 cut(s)	658, 935
BsaJI	CCNNGG	2 cut(s)	922, 1101
Bsc4I	CCNNNNNNNGG	2 cut(s)	696, 1157
Bse1I	ACTGG	2 cut(s)	481, 584
Bse8I	GATNNNNATC	1 cut(s)	351
BseBI	CCWGG	4 cut(s)	266, 297, 407, 935
BseDI	CCNNGG	2 cut(s)	922, 1101
BseGI	GGATG	2 cut(s)	61, 88
BseJI	GATNNNNATC	1 cut(s)	351
BseLI	CCNNNNNNNGG	2 cut(s)	696, 1157
BseMII	CTCAG	2 cut(s)	124, 747
BseNI	ACTGG	2 cut(s)	481, 584
BseSI	GKGCMC	1 cut(s)	904
BseXI	GCAGC	3 cut(s)	205, 497, 818
BsgI	GTGCAG	1 cut(s)	387
Bsh1236I	CGCG	1 cut(s)	29
Bsh1285I	CGRYCG	1 cut(s)	8
BshFI	GGCC	6 cut(s)	35, 405, 506, 525, 707, 972
BshNI	GGYRCC	1 cut(s)	899
BsiEI	CGRYCG	1 cut(s)	8
BsiHKCI	CYCGRG	1 cut(s)	921
BslFI	GGGAC	1 cut(s)	346
BslI	CCNNNNNNNGG	2 cut(s)	696, 1157
BsmAI	GTCTC	3 cut(s)	13, 658, 935
BsmFI	GGGAC	1 cut(s)	346
BsnI	GGCC	6 cut(s)	35, 405, 506, 525, 707, 972
Bso31I	GGTCTC	2 cut(s)	658, 935
BsoBI	CYCGRG	1 cut(s)	921
Bsp1286I	GDGCHC	1 cut(s)	904
Bsp143I	GATC	6 cut(s)	203, 352, 580, 1018, 1027, 1097
Bsp19I	CCATGG	1 cut(s)	1101
Bsp68I	TCGCGA	1 cut(s)	29
BspACI	CCGC	4 cut(s)	4, 48, 201, 1125
BspANI	GGCC	6 cut(s)	35, 405, 506, 525, 707, 972
BspCNI	CTCAG	2 cut(s)	123, 748
BspFNI	CGCG	1 cut(s)	29
BspHI	TCATGA	1 cut(s)	1138
BspLI	GGNNCC	3 cut(s)	582, 901, 1011
BspMAI	CTGCAG	1 cut(s)	393
BspPI	GGATC	6 cut(s)	211, 575, 588, 1013, 1022, 1092
BspT107I	GGYRCC	1 cut(s)	899
BspTNI	GGTCTC	2 cut(s)	658, 935
BsrI	ACTGG	2 cut(s)	481, 584
BssECI	CCNNGG	2 cut(s)	922, 1101
BssMI	GATC	6 cut(s)	203, 352, 580, 1018, 1027, 1097
BssT1I	CCWWGG	1 cut(s)	1101
Bst2UI	CCWGG	4 cut(s)	266, 297, 407, 935
Bst4CI	ACNGT	7 cut(s)	24, 317, 613, 669, 714, 848, 856
BstAPI	GCANNNNNTGC	1 cut(s)	812
BstDEI	CTNAG	5 cut(s)	110, 435, 756, 976, 1107
BstDSI	CCRYGG	1 cut(s)	1101
BstEII	GGTNACC	1 cut(s)	181
BstENI	CCTNNNNNAGG	1 cut(s)	1155
BstF5I	GGATG	2 cut(s)	61, 88
BstFNI	CGCG	1 cut(s)	29
BstH2I	RGCGCY	1 cut(s)	661
BstHHI	GCGC	1 cut(s)	660
BstKTI	GATC	6 cut(s)	206, 355, 583, 1021, 1030, 1100
BstMAI	GTCTC	3 cut(s)	13, 658, 935
BstMBI	GATC	6 cut(s)	203, 352, 580, 1018, 1027, 1097
BstMCI	CGRYCG	1 cut(s)	8
BstMWI	GCNNNNNNNGC	5 cut(s)	388, 411, 494, 503, 812
BstNI	CCWGG	4 cut(s)	266, 297, 407, 935
BstPI	GGTNACC	1 cut(s)	181
BstSCI	CCNGG	4 cut(s)	264, 295, 405, 933
BstSFI	CTRYAG	1 cut(s)	389
BstSLI	GKGCMC	1 cut(s)	904
BstUI	CGCG	1 cut(s)	29
BstV1I	GCAGC	3 cut(s)	205, 497, 818
BstV2I	GAAGAC	1 cut(s)	182
BstX2I	RGATCY	3 cut(s)	352, 580, 1097
BstXI	CCANNNNNNTGG	2 cut(s)	476, 980
BstYI	RGATCY	3 cut(s)	352, 580, 1097
BsuRI	GGCC	6 cut(s)	35, 405, 506, 525, 707, 972
BtgI	CCRYGG	1 cut(s)	1101
BtgZI	GCGATG	2 cut(s)	53, 1134
BtsCI	GGATG	2 cut(s)	61, 88
BtsI	GCAGTG	1 cut(s)	596
BtsIMutI	CAGTG	3 cut(s)	596, 753, 853
BtuMI	TCGCGA	1 cut(s)	29
CciI	TCATGA	1 cut(s)	1138
CfoI	GCGC	1 cut(s)	660
Cfr13I	GGNCC	2 cut(s)	523, 705
Csp6I	GTAC	1 cut(s)	386
CviAII	CATG	6 cut(s)	470, 492, 785, 1067, 1102, 1139
CviQI	GTAC	1 cut(s)	386
DdeI	CTNAG	5 cut(s)	110, 435, 756, 976, 1107
DpnI	GATC	6 cut(s)	205, 354, 582, 1020, 1029, 1099
DpnII	GATC	6 cut(s)	203, 352, 580, 1018, 1027, 1097
DraI	TTTAAA	1 cut(s)	843
EaeI	YGGCCR	2 cut(s)	504, 970
EciI	GGCGGA	1 cut(s)	37
Eco130I	CCWWGG	1 cut(s)	1101
Eco31I	GGTCTC	2 cut(s)	658, 935
Eco32I	GATATC	1 cut(s)	793
Eco47III	AGCGCT	1 cut(s)	659
Eco57I	CTGAAG	1 cut(s)	587
Eco88I	CYCGRG	1 cut(s)	921
Eco91I	GGTNACC	1 cut(s)	181
EcoNI	CCTNNNNNAGG	1 cut(s)	1155
EcoO65I	GGTNACC	1 cut(s)	181
EcoRII	CCWGG	4 cut(s)	264, 295, 405, 933
EcoRV	GATATC	1 cut(s)	793
EcoT14I	CCWWGG	1 cut(s)	1101
EcoT22I	ATGCAT	1 cut(s)	129
ErhI	CCWWGG	1 cut(s)	1101
FaeI	CATG	6 cut(s)	473, 495, 788, 1070, 1105, 1142
FaqI	GGGAC	1 cut(s)	346
FatI	CATG	6 cut(s)	469, 491, 784, 1066, 1101, 1138
Fnu4HI	GCNGC	4 cut(s)	219, 486, 832, 1125
FokI	GGATG	2 cut(s)	48, 75
Fsp4HI	GCNGC	4 cut(s)	219, 486, 832, 1125
FspBI	CTAG	2 cut(s)	456, 962
GlaI	GCGC	1 cut(s)	659
GluI	GCNGC	4 cut(s)	219, 486, 832, 1125
HaeII	RGCGCY	1 cut(s)	661
HaeIII	GGCC	6 cut(s)	35, 405, 506, 525, 707, 972
HhaI	GCGC	1 cut(s)	660
Hin1II	CATG	6 cut(s)	473, 495, 788, 1070, 1105, 1142
Hin6I	GCGC	1 cut(s)	658
HinP1I	GCGC	1 cut(s)	658
HincII	GTYRAC	2 cut(s)	418, 1174
HindII	GTYRAC	2 cut(s)	418, 1174
HindIII	AAGCTT	1 cut(s)	380
HinfI	GANTC	8 cut(s)	44, 82, 347, 425, 444, 460, 722, 965
HphI	GGTGA	2 cut(s)	175, 602
Hpy166II	GTNNAC	3 cut(s)	418, 868, 1174
Hpy188I	TCNGA	3 cut(s)	352, 465, 516
Hpy188III	TCNNGA	6 cut(s)	12, 28, 307, 328, 1022, 1139
Hpy8I	GTNNAC	3 cut(s)	418, 868, 1174
Hpy99I	CGWCG	1 cut(s)	13
HpyAV	CCTTC	6 cut(s)	25, 172, 404, 565, 914, 1136
HpyCH4III	ACNGT	7 cut(s)	24, 317, 613, 669, 714, 848, 856
HpyF10VI	GCNNNNNNNGC	5 cut(s)	388, 411, 494, 503, 812
HpyF3I	CTNAG	5 cut(s)	110, 435, 756, 976, 1107
Hsp92II	CATG	6 cut(s)	473, 495, 788, 1070, 1105, 1142
HspAI	GCGC	1 cut(s)	658
Kzo9I	GATC	6 cut(s)	203, 352, 580, 1018, 1027, 1097
LmnI	GCTCC	1 cut(s)	1009
Lsp1109I	GCAGC	3 cut(s)	205, 497, 818
LweI	GCATC	3 cut(s)	114, 537, 1111
MaeI	CTAG	2 cut(s)	456, 962
MaeIII	GTNAC	4 cut(s)	181, 472, 714, 1078
MalI	GATC	6 cut(s)	205, 354, 582, 1020, 1029, 1099
MboI	GATC	6 cut(s)	203, 352, 580, 1018, 1027, 1097
MboII	GAAGA	6 cut(s)	178, 182, 347, 580, 800, 876
MflI	RGATCY	3 cut(s)	352, 580, 1097
MhlI	GDGCHC	1 cut(s)	904
MlsI	TGGCCA	2 cut(s)	506, 972
MluNI	TGGCCA	2 cut(s)	506, 972
MlyI	GAGTC	1 cut(s)	974
MmeI	TCCRAC	1 cut(s)	116
MnlI	CCTC	7 cut(s)	119, 154, 499, 536, 700, 917, 1074
Mox20I	TGGCCA	2 cut(s)	506, 972
Mph1103I	ATGCAT	1 cut(s)	129
MscI	TGGCCA	2 cut(s)	506, 972
MseI	TTAA	1 cut(s)	842
MslI	CAYNNNNRTG	2 cut(s)	288, 978
Msp20I	TGGCCA	2 cut(s)	506, 972
MspR9I	CCNGG	4 cut(s)	266, 297, 407, 935
MvaI	CCWGG	4 cut(s)	266, 297, 407, 935
MvnI	CGCG	1 cut(s)	29
MwoI	GCNNNNNNNGC	5 cut(s)	388, 411, 494, 503, 812
NcoI	CCATGG	1 cut(s)	1101
NdeII	GATC	6 cut(s)	203, 352, 580, 1018, 1027, 1097
NlaIII	CATG	6 cut(s)	473, 495, 788, 1070, 1105, 1142
NlaIV	GGNNCC	3 cut(s)	582, 901, 1011
NmuCI	GTSAC	1 cut(s)	714
NruI	TCGCGA	1 cut(s)	29
NsiI	ATGCAT	1 cut(s)	129
OliI	CACNNNNGTG	1 cut(s)	978
PagI	TCATGA	1 cut(s)	1138
PfeI	GAWTC	7 cut(s)	44, 82, 347, 425, 444, 460, 722
PfoI	TCCNGGA	1 cut(s)	933
PkrI	GCNGC	4 cut(s)	220, 487, 833, 1126
PleI	GAGTC	1 cut(s)	973
PpsI	GAGTC	1 cut(s)	973
Psp6I	CCWGG	4 cut(s)	264, 295, 405, 933
PspEI	GGTNACC	1 cut(s)	181
PspGI	CCWGG	4 cut(s)	264, 295, 405, 933
PspN4I	GGNNCC	3 cut(s)	582, 901, 1011
PspPI	GGNCC	2 cut(s)	523, 705
PsrI	GAACNNNNNNTAC	2 cut(s)	261, 293
PstI	CTGCAG	1 cut(s)	393
PsuI	RGATCY	3 cut(s)	352, 580, 1097
RruI	TCGCGA	1 cut(s)	29
RsaI	GTAC	1 cut(s)	387
RsaNI	GTAC	1 cut(s)	386
RseI	CAYNNNNRTG	2 cut(s)	288, 978
SaqAI	TTAA	1 cut(s)	842
SatI	GCNGC	4 cut(s)	219, 486, 832, 1125
Sau3AI	GATC	6 cut(s)	203, 352, 580, 1018, 1027, 1097
Sau96I	GGNCC	2 cut(s)	523, 705
SchI	GAGTC	1 cut(s)	974
ScrFI	CCNGG	4 cut(s)	266, 297, 407, 935
SduI	GDGCHC	1 cut(s)	904
SfaNI	GCATC	3 cut(s)	114, 537, 1111
SfcI	CTRYAG	1 cut(s)	389
SmiMI	CAYNNNNRTG	2 cut(s)	288, 978
SmlI	CTYRAG	1 cut(s)	661
SmoI	CTYRAG	1 cut(s)	661
SsiI	CCGC	4 cut(s)	4, 48, 201, 1125
SspI	AATATT	2 cut(s)	242, 916
SspMI	CTAG	2 cut(s)	456, 962
StyD4I	CCNGG	4 cut(s)	264, 295, 405, 933
StyI	CCWWGG	1 cut(s)	1101
TaaI	ACNGT	7 cut(s)	24, 317, 613, 669, 714, 848, 856
TaqI	TCGA	3 cut(s)	11, 137, 887
TatI	WGTACW	1 cut(s)	385
TauI	GCSGC	1 cut(s)	1127
TfiI	GAWTC	7 cut(s)	44, 82, 347, 425, 444, 460, 722
Tru1I	TTAA	1 cut(s)	842
Tru9I	TTAA	1 cut(s)	842
TscAI	CASTG	3 cut(s)	603, 760, 853
TseFI	GTSAC	1 cut(s)	714
TseI	GCWGC	3 cut(s)	218, 485, 831
Tsp45I	GTSAC	1 cut(s)	714
TspDTI	ATGAA	9 cut(s)	353, 392, 607, 801, 868, 942, 957, 1127, 1155
TspGWI	ACGGA	2 cut(s)	712, 1022
TspRI	CASTG	3 cut(s)	603, 760, 853
XagI	CCTNNNNNAGG	1 cut(s)	1155
XapI	RAATTY	3 cut(s)	552, 760, 838
XcmI	CCANNNNNNNNNTGG	1 cut(s)	760
XspI	CTAG	2 cut(s)	456, 962
Zsp2I	ATGCAT	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.