Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0004500

Physical Location & Seq

Genomic Coordinates Reverse (-)

19508197 .. 19516459

Gene Structure 8263 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001716

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGCCATTTATCTCATGTTGGGCCTTCTCCGAAAGCAAAATGAGATGCAAATTTCTATAAAGCAGAGAAAGCTTGGAGACCCAATTGGTGAAACACTACTTGGAAAAACAGTCTTCATTTTGGGATATGGAAGTATTGGAATGGGCTTGGCAAAGCGCTTGAAACCATTTGGTGTGAAAATTATTGCCACAAAACGGAATTGGGACACTCATGTAGAAGATTCGTGCCAATCAAATGCGTTAGGTGACTTGGTTGACGAGAAGGGTGGTCATGAAGATATCCATTCATTTGCAAGCAATGCGGACATTGTTGTTTGTTGTTTGTGTTTAAATAGTGAAACAATTGGCATTGTAAACAAGTCATTTATATCATCGATGAGAAAGGGTGCCCTTTTGGTAAATATAGCCCGAGGGGGTCTCCTGAACTATGAAGCTGTTCTATATTACCTCAAGTCCGGACACTTAGGTGGCTTGGGCATTGATGTTGCGTGGACTGAGCCATTTAATCCTGATGATCCCATTTTGAAGTTCAATAATGTTCTGATCACACCTCATGTTGCAGGAGTTACCGAGTATTCTTACCGATCCATGTCAAAAATAGTTGGTGATGCTGCCATTCAACTTCATGAAGGGAAGCCTTTGACAGGACTCGAGTTTGTCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003008 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006081 GO:0006082 GO:0007588 GO:0008150 GO:0008152 GO:0008465 GO:0009987 GO:0016043 GO:0016491 GO:0016614 GO:0016616 GO:0016618 GO:0019752 GO:0022607 GO:0030267 GO:0031406 GO:0032501 GO:0032787 GO:0036094 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043177 GO:0043436 GO:0043648 GO:0043933 GO:0044085 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046487 GO:0046983 GO:0048037 GO:0050661 GO:0050662 GO:0051259 GO:0051287 GO:0055114 GO:0065003 GO:0070402 GO:0071704 GO:0071840 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2-Hacid_dh 2-Hacid_dh_C

Protein Analysis

222

Amino Acids

24.09

Weight (kDa)

7.0

Isoelectric Point (pI)

27.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2-Hacid_dh_C	PF02826	4 - 187	5.5e-42	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72190
fragaria_vesca	FvH4_5g31330 FvH4_5g31330 FvH4_5g31330 FvH4_5g31330 FvH4_5g31330 FvH4_5g31330 FvH4_5g31330
malus_domestica	MD08G1217300.v1.1
prunus_persica	Prupe.1G556800_v2.0.a1 Prupe.1G556800_v2.0.a1 Prupe.1G556800_v2.0.a1 Prupe.1G556800_v2.0.a1 Prupe.1G556800_v2.0.a1 Prupe.1G556800_v2.0.a1
pyrus_communis	pycom08g18800
rosa_chinensis	RchiOBHm_Chr7g0226521 RchiOBHm_Chr7g0226551
rosa_laevigata	RLG00000001716 RLG00000001719
rosa_multiflora	Rmu_sc0001423.1_g000008
rosa_roxburghii	Rroxscaffold_3G00232710
rosa_rugosa	Rorug07G0237900 Rorug07G0237900 Rorug07G0238000 Rorug07G0238200
rosa_samantha	Rh7BG372200 Rh7BG372500 Rh7DG384300 Rh7DG384500
rosa_wichuraiana	Rw7G032370 Rw7G032390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	386
AccIII	TCCGGA	1 cut(s)	455
AciI	CCGC	1 cut(s)	302
AclWI	GGATC	2 cut(s)	509, 579
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	51
AfeI	AGCGCT	1 cut(s)	158
AfiI	CCNNNNNNNGG	2 cut(s)	195, 644
AgsI	TTSAA	4 cut(s)	163, 526, 532, 620
AjuI	GAANNNNNNNTTGG	2 cut(s)	84, 116
AleI	CACNNNNGTG	1 cut(s)	465
AluBI	AGCT	2 cut(s)	73, 434
AluI	AGCT	2 cut(s)	73, 434
Alw26I	GTCTC	2 cut(s)	72, 422
AlwI	GGATC	2 cut(s)	509, 579
Ama87I	CYCGRG	2 cut(s)	408, 650
Aor13HI	TCCGGA	1 cut(s)	455
Aor51HI	AGCGCT	1 cut(s)	158
AoxI	GGCC	2 cut(s)	3, 22
ApeKI	GCWGC	1 cut(s)	611
ApoI	RAATTY	1 cut(s)	51
Asp700I	GAANNNNTTC	1 cut(s)	435
AspLEI	GCGC	1 cut(s)	159
AspS9I	GGNCC	1 cut(s)	22
AsuHPI	GGTGA	3 cut(s)	101, 257, 617
AvaI	CYCGRG	2 cut(s)	408, 650
BaeGI	GKGCMC	1 cut(s)	391
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	386
BbsI	GAAGAC	1 cut(s)	106
BbvI	GCAGC	1 cut(s)	598
BclI	TGATCA	1 cut(s)	543
BcoDI	GTCTC	2 cut(s)	72, 422
BfoI	RGCGCY	1 cut(s)	160
BisI	GCNGC	1 cut(s)	612
BlsI	GCNGC	1 cut(s)	613
BmeT110I	CYCGRG	2 cut(s)	408, 650
BmgT120I	GGNCC	1 cut(s)	22
BmiI	GGNNCC	1 cut(s)	388
BmsI	GCATC	2 cut(s)	36, 598
BpiI	GAAGAC	1 cut(s)	106
BplI	GAGNNNNNCTC	2 cut(s)	402, 434
BpuEI	CTTGAG	1 cut(s)	434
Bsa29I	ATCGAT	1 cut(s)	374
BsaI	GGTCTC	2 cut(s)	72, 422
BsaJI	CCNNGG	1 cut(s)	409
BsaWI	WCCGGW	1 cut(s)	455
Bsc4I	CCNNNNNNNGG	2 cut(s)	195, 644
Bse3DI	GCAATG	1 cut(s)	304
BseAI	TCCGGA	1 cut(s)	455
BseCI	ATCGAT	1 cut(s)	374
BseDI	CCNNGG	1 cut(s)	409
BseLI	CCNNNNNNNGG	2 cut(s)	195, 644
BseMI	GCAATG	1 cut(s)	304
BseMII	CTCAG	1 cut(s)	486
BseSI	GKGCMC	1 cut(s)	391
BseXI	GCAGC	1 cut(s)	598
BshFI	GGCC	2 cut(s)	5, 24
BshNI	GGYRCC	1 cut(s)	386
BshVI	ATCGAT	1 cut(s)	374
BsiHKCI	CYCGRG	2 cut(s)	408, 650
BsiSI	CCGG	1 cut(s)	456
BslFI	GGGAC	1 cut(s)	218
BslI	CCNNNNNNNGG	2 cut(s)	195, 644
BsmAI	GTCTC	2 cut(s)	72, 422
BsmFI	GGGAC	1 cut(s)	218
BsnI	GGCC	2 cut(s)	5, 24
Bso31I	GGTCTC	2 cut(s)	72, 422
BsoBI	CYCGRG	2 cut(s)	408, 650
Bsp1286I	GDGCHC	1 cut(s)	391
Bsp13I	TCCGGA	1 cut(s)	455
Bsp143I	GATC	3 cut(s)	514, 543, 584
BspACI	CCGC	1 cut(s)	302
BspANI	GGCC	2 cut(s)	5, 24
BspCNI	CTCAG	1 cut(s)	487
BspDI	ATCGAT	1 cut(s)	374
BspEI	TCCGGA	1 cut(s)	455
BspHI	TCATGA	2 cut(s)	271, 625
BspLI	GGNNCC	1 cut(s)	388
BspPI	GGATC	2 cut(s)	509, 579
BspT107I	GGYRCC	1 cut(s)	386
BspTNI	GGTCTC	2 cut(s)	72, 422
BsrDI	GCAATG	1 cut(s)	304
BssECI	CCNNGG	1 cut(s)	409
BssMI	GATC	3 cut(s)	514, 543, 584
Bst4CI	ACNGT	1 cut(s)	112
BstAPI	GCANNNNNTGC	1 cut(s)	299
BstC8I	GCNNGC	1 cut(s)	295
BstDEI	CTNAG	2 cut(s)	463, 495
BstENI	CCTNNNNNAGG	1 cut(s)	642
BstH2I	RGCGCY	1 cut(s)	160
BstHHI	GCGC	1 cut(s)	159
BstKTI	GATC	3 cut(s)	517, 546, 587
BstMAI	GTCTC	2 cut(s)	72, 422
BstMBI	GATC	3 cut(s)	514, 543, 584
BstMWI	GCNNNNNNNGC	2 cut(s)	70, 299
BstSLI	GKGCMC	1 cut(s)	391
BstV1I	GCAGC	1 cut(s)	598
BstV2I	GAAGAC	1 cut(s)	106
Bsu15I	ATCGAT	1 cut(s)	374
BsuRI	GGCC	2 cut(s)	5, 24
BsuTUI	ATCGAT	1 cut(s)	374
Cac8I	GCNNGC	1 cut(s)	295
CciI	TCATGA	2 cut(s)	271, 625
CfoI	GCGC	1 cut(s)	159
Cfr13I	GGNCC	1 cut(s)	22
ClaI	ATCGAT	1 cut(s)	374
CviAII	CATG	6 cut(s)	16, 212, 272, 554, 589, 626
CviJI	RGCY	9 cut(s)	5, 24, 73, 147, 407, 434, 471, 499, 637
CviKI_1	RGCY	9 cut(s)	5, 24, 73, 147, 407, 434, 471, 499, 637
DdeI	CTNAG	2 cut(s)	463, 495
DpnI	GATC	3 cut(s)	516, 545, 586
DpnII	GATC	3 cut(s)	514, 543, 584
DraI	TTTAAA	1 cut(s)	330
EaeI	YGGCCR	1 cut(s)	3
Eco31I	GGTCTC	2 cut(s)	72, 422
Eco32I	GATATC	1 cut(s)	280
Eco47III	AGCGCT	1 cut(s)	158
Eco88I	CYCGRG	2 cut(s)	408, 650
EcoNI	CCTNNNNNAGG	1 cut(s)	642
EcoRV	GATATC	1 cut(s)	280
FaeI	CATG	6 cut(s)	19, 215, 275, 557, 592, 629
FaqI	GGGAC	1 cut(s)	218
FatI	CATG	6 cut(s)	15, 211, 271, 553, 588, 625
FbaI	TGATCA	1 cut(s)	543
Fnu4HI	GCNGC	1 cut(s)	612
Fsp4HI	GCNGC	1 cut(s)	612
GlaI	GCGC	1 cut(s)	158
GluI	GCNGC	1 cut(s)	612
HaeII	RGCGCY	1 cut(s)	160
HaeIII	GGCC	2 cut(s)	5, 24
HapII	CCGG	1 cut(s)	456
HhaI	GCGC	1 cut(s)	159
Hin1II	CATG	6 cut(s)	19, 215, 275, 557, 592, 629
Hin6I	GCGC	1 cut(s)	157
HinP1I	GCGC	1 cut(s)	157
HincII	GTYRAC	2 cut(s)	256, 661
HindII	GTYRAC	2 cut(s)	256, 661
HindIII	AAGCTT	1 cut(s)	71
HinfI	GANTC	2 cut(s)	221, 648
HpaII	CCGG	1 cut(s)	456
HphI	GGTGA	3 cut(s)	101, 257, 617
Hpy166II	GTNNAC	4 cut(s)	256, 355, 492, 661
Hpy188I	TCNGA	2 cut(s)	32, 543
Hpy188III	TCNNGA	5 cut(s)	272, 421, 456, 509, 626
Hpy8I	GTNNAC	4 cut(s)	256, 355, 492, 661
HpyAV	CCTTC	3 cut(s)	35, 256, 623
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4V	TGCA	3 cut(s)	49, 293, 560
HpyF10VI	GCNNNNNNNGC	2 cut(s)	70, 299
HpyF3I	CTNAG	2 cut(s)	463, 495
Hsp92II	CATG	6 cut(s)	19, 215, 275, 557, 592, 629
HspAI	GCGC	1 cut(s)	157
Kpn2I	TCCGGA	1 cut(s)	455
Ksp22I	TGATCA	1 cut(s)	543
Kzo9I	GATC	3 cut(s)	514, 543, 584
LpnPI	CCDG	5 cut(s)	434, 469, 522, 546, 630
Lsp1109I	GCAGC	1 cut(s)	598
LweI	GCATC	2 cut(s)	36, 598
MaeIII	GTNAC	2 cut(s)	245, 565
MalI	GATC	3 cut(s)	516, 545, 586
MboI	GATC	3 cut(s)	514, 543, 584
MboII	GAAGA	3 cut(s)	106, 230, 287
MfeI	CAATTG	2 cut(s)	84, 342
MhlI	GDGCHC	1 cut(s)	391
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	51, 84, 180, 199, 342
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	642
MnlI	CCTC	3 cut(s)	404, 458, 561
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	455
MroXI	GAANNNNTTC	1 cut(s)	435
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	329, 504
MslI	CAYNNNNRTG	1 cut(s)	465
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	456
MunI	CAATTG	2 cut(s)	84, 342
MwoI	GCNNNNNNNGC	2 cut(s)	70, 299
NdeII	GATC	3 cut(s)	514, 543, 584
NlaIII	CATG	6 cut(s)	19, 215, 275, 557, 592, 629
NlaIV	GGNNCC	1 cut(s)	388
NmuCI	GTSAC	1 cut(s)	245
OliI	CACNNNNGTG	1 cut(s)	465
PaeR7I	CTCGAG	1 cut(s)	650
PagI	TCATGA	2 cut(s)	271, 625
PdmI	GAANNNNTTC	1 cut(s)	435
PfeI	GAWTC	1 cut(s)	221
PkrI	GCNGC	1 cut(s)	613
PleI	GAGTC	1 cut(s)	642
PpsI	GAGTC	1 cut(s)	642
PspN4I	GGNNCC	1 cut(s)	388
PspPI	GGNCC	1 cut(s)	22
PspXI	VCTCGAGB	1 cut(s)	650
RseI	CAYNNNNRTG	1 cut(s)	465
SaqAI	TTAA	2 cut(s)	329, 504
SatI	GCNGC	1 cut(s)	612
Sau3AI	GATC	3 cut(s)	514, 543, 584
Sau96I	GGNCC	1 cut(s)	22
SchI	GAGTC	1 cut(s)	642
SduI	GDGCHC	1 cut(s)	391
SetI	ASST	6 cut(s)	75, 247, 436, 450, 469, 553
SfaNI	GCATC	2 cut(s)	36, 598
Sfr274I	CTCGAG	1 cut(s)	650
SlaI	CTCGAG	1 cut(s)	650
SmiMI	CAYNNNNRTG	1 cut(s)	465
SmlI	CTYRAG	2 cut(s)	449, 650
SmoI	CTYRAG	2 cut(s)	449, 650
Sse9I	AATT	5 cut(s)	51, 84, 180, 199, 342
SsiI	CCGC	1 cut(s)	302
TaaI	ACNGT	1 cut(s)	112
TaqI	TCGA	2 cut(s)	374, 651
TasI	AATT	5 cut(s)	51, 84, 180, 199, 342
TfiI	GAWTC	1 cut(s)	221
Tru1I	TTAA	2 cut(s)	329, 504
Tru9I	TTAA	2 cut(s)	329, 504
TseFI	GTSAC	1 cut(s)	245
TseI	GCWGC	1 cut(s)	611
Tsp45I	GTSAC	1 cut(s)	245
TspDTI	ATGAA	6 cut(s)	106, 276, 288, 444, 614, 642
TspGWI	ACGGA	1 cut(s)	211
XagI	CCTNNNNNAGG	1 cut(s)	642
XapI	RAATTY	1 cut(s)	51
XhoI	CTCGAG	1 cut(s)	650
XmnI	GAANNNNTTC	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.