Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0004500

Physical Location & Seq

Genomic Coordinates Reverse (-)

19573033 .. 19578052

Gene Structure 5020 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001719

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGTTTTCCTCCTCATTTTCTCGTGTTCCTTATTCTGTCGATGATGTACCTCTTGCTGATGTGCCTGTTGTTATCGAGAAGTATGATATCTGTATAGTGAAAAGCATGAAGTTAGATTTTAACGTCCTCTCTCGTGCAAAAAAGATGAAGCTTATAATGCAGTATGGTGTTGGATTGGAAGGCGTTGAAATTGATGCTGCGACTAAGTTTGGAATTAAAGTCGCTAGGATTCCGAGTCATGCAACTGGAAATGCAGCCTCATGTGCAGAAATGGCCATTTATCTCATGTTGGGCCTTCTCCGAAAGCAAAATGAGATGCAAATTTCAATAAAGCAGAGAAAGCTTGGAGACCCAATTGGTGAAACACTACTTGGAAAAACAGTCTTCATTTTAGGATATGGAAATATTGGAATGGACTTGGCAAAGCGCTTGAAACCATTTGGTGTGAAAATTATTGGCACAAGACGGAATTGGGACACTCATTCAGAAGATTCGTGCCAATCAAATGCGTTAGGTGACTTGGTTGACGAGAAGGGCGGTCATGAAGATATCCATTCATTTGCAAGCAATGCGGACATTGTTGTTTGTTGTTTGCGTTCAAATAGTGAAACAGTTGGCATTGTAAACAAGTCATTTATATCATCGATGAGAAAGGGTGCCCTTTTAGTAAATATAGCCCGAGGGGGTCTCCTAAACTATGAAGCTGTTCTTTATTACCTCGAGTCTGGACACTTAGGTGGCTTGGGCATTGATGTTGCTTGGACTGAGCCATTTGATCCTGATGATCCCATTTTGAAGTTCAATAATGTTTTGATCACACCTCATGTTGCAGGAGTTACCGAGTATTCTTTTAGATCCATGTCAAAGGTAGTTGGTGATGTTAGCATTCAACTTCATGAAGGGAAGCCTTTGACAGGACTGGAGTTTGTCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003008 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006081 GO:0006082 GO:0007588 GO:0008150 GO:0008152 GO:0008465 GO:0009987 GO:0016043 GO:0016491 GO:0016614 GO:0016616 GO:0016618 GO:0019752 GO:0022607 GO:0030267 GO:0031406 GO:0032501 GO:0032787 GO:0036094 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043177 GO:0043436 GO:0043648 GO:0043933 GO:0044085 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046487 GO:0046983 GO:0048037 GO:0050661 GO:0050662 GO:0051259 GO:0051287 GO:0055114 GO:0065003 GO:0070402 GO:0071704 GO:0071840 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2-Hacid_dh 2-Hacid_dh_C

Protein Analysis

312

Amino Acids

33.96

Weight (kDa)

6.39

Isoelectric Point (pI)

33.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2-Hacid_dh	PF00389	23 - 301	3.1e-12	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
2-Hacid_dh_C	PF02826	94 - 277	4.5e-41	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72190
fragaria_vesca	FvH4_5g31330 FvH4_5g31330 FvH4_5g31330 FvH4_5g31330 FvH4_5g31330 FvH4_5g31330 FvH4_5g31330
malus_domestica	MD08G1217300.v1.1
prunus_persica	Prupe.1G556800_v2.0.a1 Prupe.1G556800_v2.0.a1 Prupe.1G556800_v2.0.a1 Prupe.1G556800_v2.0.a1 Prupe.1G556800_v2.0.a1 Prupe.1G556800_v2.0.a1
pyrus_communis	pycom08g18800
rosa_chinensis	RchiOBHm_Chr7g0226521 RchiOBHm_Chr7g0226551
rosa_laevigata	RLG00000001716 RLG00000001719
rosa_multiflora	Rmu_sc0001423.1_g000008
rosa_roxburghii	Rroxscaffold_3G00232710
rosa_rugosa	Rorug07G0237900 Rorug07G0237900 Rorug07G0238000 Rorug07G0238200
rosa_samantha	Rh7BG372200 Rh7BG372500 Rh7DG384300 Rh7DG384500
rosa_wichuraiana	Rw7G032370 Rw7G032390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	155
AccB1I	GGYRCC	1 cut(s)	656
AciI	CCGC	2 cut(s)	537, 572
AclWI	GGATC	3 cut(s)	770, 779, 849
AcoI	YGGCCR	1 cut(s)	273
AcsI	RAATTY	1 cut(s)	321
AfaI	GTAC	1 cut(s)	48
AfeI	AGCGCT	1 cut(s)	428
AfiI	CCNNNNNNNGG	1 cut(s)	914
AgsI	TTSAA	7 cut(s)	188, 327, 433, 600, 796, 802, 890
AjuI	GAANNNNNNNTTGG	2 cut(s)	354, 386
AleI	CACNNNNGTG	1 cut(s)	735
AluBI	AGCT	3 cut(s)	151, 343, 704
AluI	AGCT	3 cut(s)	151, 343, 704
Alw26I	GTCTC	2 cut(s)	342, 692
AlwI	GGATC	3 cut(s)	770, 779, 849
Ama87I	CYCGRG	2 cut(s)	678, 719
Aor51HI	AGCGCT	1 cut(s)	428
AoxI	GGCC	2 cut(s)	273, 292
ApeKI	GCWGC	2 cut(s)	197, 254
ApoI	RAATTY	1 cut(s)	321
Asp700I	GAANNNNTTC	1 cut(s)	705
AspLEI	GCGC	1 cut(s)	429
AspS9I	GGNCC	1 cut(s)	292
AsuHPI	GGTGA	3 cut(s)	371, 527, 887
AvaI	CYCGRG	2 cut(s)	678, 719
BaeGI	GKGCMC	1 cut(s)	661
BalI	TGGCCA	1 cut(s)	275
BanI	GGYRCC	1 cut(s)	656
BauI	CACGAG	2 cut(s)	21, 132
BbsI	GAAGAC	1 cut(s)	376
BbvI	GCAGC	2 cut(s)	184, 266
BclI	TGATCA	1 cut(s)	813
BcoDI	GTCTC	2 cut(s)	342, 692
BfaI	CTAG	1 cut(s)	225
BfoI	RGCGCY	1 cut(s)	430
BisI	GCNGC	2 cut(s)	198, 255
BlsI	GCNGC	2 cut(s)	199, 256
BmeT110I	CYCGRG	2 cut(s)	678, 719
BmgT120I	GGNCC	1 cut(s)	292
BmiI	GGNNCC	1 cut(s)	658
BmsI	GCATC	2 cut(s)	184, 306
BpiI	GAAGAC	1 cut(s)	376
BplI	GAGNNNNNCTC	2 cut(s)	672, 704
Bsa29I	ATCGAT	1 cut(s)	644
BsaI	GGTCTC	2 cut(s)	342, 692
BsaJI	CCNNGG	1 cut(s)	679
Bsc4I	CCNNNNNNNGG	1 cut(s)	914
Bse1I	ACTGG	2 cut(s)	250, 924
Bse3DI	GCAATG	1 cut(s)	574
BseCI	ATCGAT	1 cut(s)	644
BseDI	CCNNGG	1 cut(s)	679
BseLI	CCNNNNNNNGG	1 cut(s)	914
BseMI	GCAATG	1 cut(s)	574
BseMII	CTCAG	1 cut(s)	756
BseNI	ACTGG	2 cut(s)	250, 924
BseSI	GKGCMC	1 cut(s)	661
BseXI	GCAGC	2 cut(s)	184, 266
BsgI	GTGCAG	1 cut(s)	285
BshFI	GGCC	2 cut(s)	275, 294
BshNI	GGYRCC	1 cut(s)	656
BshVI	ATCGAT	1 cut(s)	644
BsiHKCI	CYCGRG	2 cut(s)	678, 719
BslFI	GGGAC	1 cut(s)	488
BslI	CCNNNNNNNGG	1 cut(s)	914
BsmAI	GTCTC	2 cut(s)	342, 692
BsmFI	GGGAC	1 cut(s)	488
BsmI	GAATGC	1 cut(s)	885
BsnI	GGCC	2 cut(s)	275, 294
Bso31I	GGTCTC	2 cut(s)	342, 692
BsoBI	CYCGRG	2 cut(s)	678, 719
Bsp1286I	GDGCHC	1 cut(s)	661
Bsp143I	GATC	4 cut(s)	775, 784, 813, 854
BspACI	CCGC	2 cut(s)	537, 572
BspANI	GGCC	2 cut(s)	275, 294
BspCNI	CTCAG	1 cut(s)	757
BspDI	ATCGAT	1 cut(s)	644
BspHI	TCATGA	2 cut(s)	541, 895
BspLI	GGNNCC	1 cut(s)	658
BspPI	GGATC	3 cut(s)	770, 779, 849
BspT107I	GGYRCC	1 cut(s)	656
BspTNI	GGTCTC	2 cut(s)	342, 692
BsrDI	GCAATG	1 cut(s)	574
BsrI	ACTGG	2 cut(s)	250, 924
BssECI	CCNNGG	1 cut(s)	679
BssMI	GATC	4 cut(s)	775, 784, 813, 854
BssSI	CACGAG	2 cut(s)	21, 132
Bst2BI	CACGAG	2 cut(s)	21, 132
Bst4CI	ACNGT	2 cut(s)	382, 613
BstAPI	GCANNNNNTGC	1 cut(s)	569
BstC8I	GCNNGC	1 cut(s)	565
BstDEI	CTNAG	3 cut(s)	204, 733, 765
BstENI	CCTNNNNNAGG	1 cut(s)	912
BstH2I	RGCGCY	1 cut(s)	430
BstHHI	GCGC	1 cut(s)	429
BstKTI	GATC	4 cut(s)	778, 787, 816, 857
BstMAI	GTCTC	2 cut(s)	342, 692
BstMBI	GATC	4 cut(s)	775, 784, 813, 854
BstMWI	GCNNNNNNNGC	5 cut(s)	157, 263, 272, 340, 569
BstSLI	GKGCMC	1 cut(s)	661
BstV1I	GCAGC	2 cut(s)	184, 266
BstV2I	GAAGAC	1 cut(s)	376
BstX2I	RGATCY	1 cut(s)	854
BstYI	RGATCY	1 cut(s)	854
Bsu15I	ATCGAT	1 cut(s)	644
BsuRI	GGCC	2 cut(s)	275, 294
BsuTUI	ATCGAT	1 cut(s)	644
Cac8I	GCNNGC	1 cut(s)	565
CciI	TCATGA	2 cut(s)	541, 895
CfoI	GCGC	1 cut(s)	429
Cfr13I	GGNCC	1 cut(s)	292
ClaI	ATCGAT	1 cut(s)	644
Csp6I	GTAC	1 cut(s)	47
CviAII	CATG	8 cut(s)	106, 239, 261, 286, 542, 824, 859, 896
CviQI	GTAC	1 cut(s)	47
DdeI	CTNAG	3 cut(s)	204, 733, 765
DpnI	GATC	4 cut(s)	777, 786, 815, 856
DpnII	GATC	4 cut(s)	775, 784, 813, 854
EaeI	YGGCCR	1 cut(s)	273
Eco31I	GGTCTC	2 cut(s)	342, 692
Eco32I	GATATC	2 cut(s)	88, 550
Eco47III	AGCGCT	1 cut(s)	428
Eco88I	CYCGRG	2 cut(s)	678, 719
EcoNI	CCTNNNNNAGG	1 cut(s)	912
EcoRV	GATATC	2 cut(s)	88, 550
FaeI	CATG	8 cut(s)	109, 242, 264, 289, 545, 827, 862, 899
FalI	AAGNNNNNCTT	2 cut(s)	693, 725
FaqI	GGGAC	1 cut(s)	488
FatI	CATG	8 cut(s)	105, 238, 260, 285, 541, 823, 858, 895
FbaI	TGATCA	1 cut(s)	813
Fnu4HI	GCNGC	2 cut(s)	198, 255
Fsp4HI	GCNGC	2 cut(s)	198, 255
FspBI	CTAG	1 cut(s)	225
GlaI	GCGC	1 cut(s)	428
GluI	GCNGC	2 cut(s)	198, 255
HaeII	RGCGCY	1 cut(s)	430
HaeIII	GGCC	2 cut(s)	275, 294
HhaI	GCGC	1 cut(s)	429
Hin1II	CATG	8 cut(s)	109, 242, 264, 289, 545, 827, 862, 899
Hin6I	GCGC	1 cut(s)	427
HinP1I	GCGC	1 cut(s)	427
HincII	GTYRAC	2 cut(s)	526, 931
HindII	GTYRAC	2 cut(s)	526, 931
HindIII	AAGCTT	2 cut(s)	149, 341
HinfI	GANTC	4 cut(s)	229, 235, 491, 722
HphI	GGTGA	3 cut(s)	371, 527, 887
Hpy166II	GTNNAC	3 cut(s)	526, 625, 931
Hpy188I	TCNGA	3 cut(s)	234, 302, 487
Hpy188III	TCNNGA	5 cut(s)	76, 542, 726, 779, 896
Hpy8I	GTNNAC	3 cut(s)	526, 625, 931
HpyAV	CCTTC	4 cut(s)	173, 305, 526, 893
HpyCH4III	ACNGT	2 cut(s)	382, 613
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	8 cut(s)	137, 160, 242, 254, 266, 319, 563, 830
HpyF10VI	GCNNNNNNNGC	5 cut(s)	157, 263, 272, 340, 569
HpyF3I	CTNAG	3 cut(s)	204, 733, 765
HpySE526I	ACGT	1 cut(s)	123
Hsp92II	CATG	8 cut(s)	109, 242, 264, 289, 545, 827, 862, 899
HspAI	GCGC	1 cut(s)	427
Ksp22I	TGATCA	1 cut(s)	813
Kzo9I	GATC	4 cut(s)	775, 784, 813, 854
LpnPI	CCDG	7 cut(s)	78, 231, 711, 792, 816, 900, 905
Lsp1109I	GCAGC	2 cut(s)	184, 266
LweI	GCATC	2 cut(s)	184, 306
MaeI	CTAG	1 cut(s)	225
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	2 cut(s)	515, 835
MalI	GATC	4 cut(s)	777, 786, 815, 856
MboI	GATC	4 cut(s)	775, 784, 813, 854
MboII	GAAGA	3 cut(s)	376, 500, 557
MfeI	CAATTG	1 cut(s)	354
MflI	RGATCY	1 cut(s)	854
MhlI	GDGCHC	1 cut(s)	661
MlsI	TGGCCA	1 cut(s)	275
MluCI	AATT	6 cut(s)	189, 213, 321, 354, 450, 469
MluNI	TGGCCA	1 cut(s)	275
MlyI	GAGTC	2 cut(s)	244, 731
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	8 cut(s)	19, 22, 60, 137, 268, 674, 728, 831
Mox20I	TGGCCA	1 cut(s)	275
MroXI	GAANNNNTTC	1 cut(s)	705
MscI	TGGCCA	1 cut(s)	275
MseI	TTAA	2 cut(s)	120, 216
MslI	CAYNNNNRTG	1 cut(s)	735
Msp20I	TGGCCA	1 cut(s)	275
MunI	CAATTG	1 cut(s)	354
Mva1269I	GAATGC	1 cut(s)	885
MwoI	GCNNNNNNNGC	5 cut(s)	157, 263, 272, 340, 569
NdeII	GATC	4 cut(s)	775, 784, 813, 854
NlaIII	CATG	8 cut(s)	109, 242, 264, 289, 545, 827, 862, 899
NlaIV	GGNNCC	1 cut(s)	658
NmuCI	GTSAC	1 cut(s)	515
OliI	CACNNNNGTG	1 cut(s)	735
PaeR7I	CTCGAG	1 cut(s)	719
PagI	TCATGA	2 cut(s)	541, 895
PctI	GAATGC	1 cut(s)	885
PdmI	GAANNNNTTC	1 cut(s)	705
PfeI	GAWTC	2 cut(s)	229, 491
PkrI	GCNGC	2 cut(s)	199, 256
PleI	GAGTC	2 cut(s)	243, 730
PpsI	GAGTC	2 cut(s)	243, 730
PsiI	TTATAA	1 cut(s)	155
PspN4I	GGNNCC	1 cut(s)	658
PspPI	GGNCC	1 cut(s)	292
PspXI	VCTCGAGB	1 cut(s)	719
PsuI	RGATCY	1 cut(s)	854
RsaI	GTAC	1 cut(s)	48
RsaNI	GTAC	1 cut(s)	47
RseI	CAYNNNNRTG	1 cut(s)	735
SaqAI	TTAA	2 cut(s)	120, 216
SatI	GCNGC	2 cut(s)	198, 255
Sau3AI	GATC	4 cut(s)	775, 784, 813, 854
Sau96I	GGNCC	1 cut(s)	292
SchI	GAGTC	2 cut(s)	244, 731
SduI	GDGCHC	1 cut(s)	661
SfaNI	GCATC	2 cut(s)	184, 306
Sfr274I	CTCGAG	1 cut(s)	719
SlaI	CTCGAG	1 cut(s)	719
SmiMI	CAYNNNNRTG	1 cut(s)	735
SmlI	CTYRAG	1 cut(s)	719
SmoI	CTYRAG	1 cut(s)	719
Sse9I	AATT	6 cut(s)	189, 213, 321, 354, 450, 469
SsiI	CCGC	2 cut(s)	537, 572
SspI	AATATT	1 cut(s)	406
SspMI	CTAG	1 cut(s)	225
TaaI	ACNGT	2 cut(s)	382, 613
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	4 cut(s)	39, 75, 644, 720
TasI	AATT	6 cut(s)	189, 213, 321, 354, 450, 469
TfiI	GAWTC	2 cut(s)	229, 491
Tru1I	TTAA	2 cut(s)	120, 216
Tru9I	TTAA	2 cut(s)	120, 216
TseFI	GTSAC	1 cut(s)	515
TseI	GCWGC	2 cut(s)	197, 254
Tsp45I	GTSAC	1 cut(s)	515
TspDTI	ATGAA	8 cut(s)	122, 161, 376, 546, 558, 714, 884, 912
TspGWI	ACGGA	1 cut(s)	481
XagI	CCTNNNNNAGG	1 cut(s)	912
XapI	RAATTY	1 cut(s)	321
XhoI	CTCGAG	1 cut(s)	719
XmnI	GAANNNNTTC	1 cut(s)	705
XspI	CTAG	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.