Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0004500

Physical Location & Seq

Genomic Coordinates Forward (+)

22229156 .. 22237051

Gene Structure 7896 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g31330.t7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGGTGATGTCGACAAGAAAATCACCCATGTTCTCTTTTGCGGGCCACATTTCCCTGCTTCTGAGGATTACACAAGAGAATATTTGATCGATTACCCTTTTGTCCAGGTCGATGATGTACCCCTTGCTGATGTGCCTGATGTTATCGAGAACTATGATATCTGTATAGTGAAAAGCATGAAGCTAGATTTTGATGTTCTCTCTCGTGCGAAAAAGATGAAGCTTATAATGCAGTATGGTGTTGGACTGGAAGGCGTCGAAATTGATGCTGCAACTAAGTTTGGGATTAAAGTCGCTAGGATTCCGAGTCATGCAACTGGAAATGCAGCCTCATGTGCAGAAATGTCCATTTATCTCATGTTGGGCCTTCTTCGAAAACAAAATGAGATGCAAATTTCTATAAAGCAGAGAAAGCTTGGAGATCCAATTGGTGAAACACTACTTGGAAAAACAGTTTTCATTTTAGGTTATGGAAATATTGGAATGGATTTGGCAAAGCGCTTGAAACCATTTGGTGTGAAAATTATTGCAACAAAACGGAATTGGGACACTCACTCAGAAGATTTGTGCCAATCAAATGGATTAGGTGACTTGGTTGACGAGAAGGGTGGTCATGAAGATATCCATACATTTGCAGGCAATGCAGACATTGTTGTTTGTTGTTTGTGTTTAAATAGTGAAACAGTTGGCATTGTAAACAAATCATTTTTATCATCGATGAGAAAGGGTGCCCTTTTGGTAAATATTGCCCGAGGGGGTCTCTTGAACTATGAAGCTGTTCTAAATTACCTCGAGTCCGGATACTTGGGTGGCTTGGGCATTGATGTTGCTTGGACTGAGCCATTTGATCCTGATGATCCCATTTTGAAGTTCAATAATGTACTGATCACACCTCATGTTGCAGGAGTTACCGAGTATTCTTACAGATCCATGTCAAAGGTAGTTGGTGATGTTGCCATTCAACTTCATGAAGGGAAGCCTTTGACAGGACTGGAGTTTGTCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003008 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006081 GO:0006082 GO:0007588 GO:0008150 GO:0008152 GO:0008465 GO:0009987 GO:0016043 GO:0016491 GO:0016614 GO:0016616 GO:0016618 GO:0019752 GO:0022607 GO:0030267 GO:0031406 GO:0032501 GO:0032787 GO:0036094 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043177 GO:0043436 GO:0043648 GO:0043933 GO:0044085 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046487 GO:0046983 GO:0048037 GO:0050661 GO:0050662 GO:0051259 GO:0051287 GO:0055114 GO:0065003 GO:0070402 GO:0071704 GO:0071840 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2-Hacid_dh 2-Hacid_dh_C

Protein Analysis

336

Amino Acids

36.75

Weight (kDa)

5.32

Isoelectric Point (pI)

26.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2-Hacid_dh	PF00389	2 - 269	4.3e-10	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
2-Hacid_dh_C	PF02826	59 - 242	1.6e-41	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72190
fragaria_vesca	FvH4_5g31330 FvH4_5g31330 FvH4_5g31330 FvH4_5g31330 FvH4_5g31330 FvH4_5g31330 FvH4_5g31330
malus_domestica	MD08G1217300.v1.1
prunus_persica	Prupe.1G556800_v2.0.a1 Prupe.1G556800_v2.0.a1 Prupe.1G556800_v2.0.a1 Prupe.1G556800_v2.0.a1 Prupe.1G556800_v2.0.a1 Prupe.1G556800_v2.0.a1
pyrus_communis	pycom08g18800
rosa_chinensis	RchiOBHm_Chr7g0226521 RchiOBHm_Chr7g0226551
rosa_laevigata	RLG00000001716 RLG00000001719
rosa_multiflora	Rmu_sc0001423.1_g000008
rosa_roxburghii	Rroxscaffold_3G00232710
rosa_rugosa	Rorug07G0237900 Rorug07G0237900 Rorug07G0238000 Rorug07G0238200
rosa_samantha	Rh7BG372200 Rh7BG372500 Rh7DG384300 Rh7DG384500
rosa_wichuraiana	Rw7G032370 Rw7G032390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	227
AccB1I	GGYRCC	1 cut(s)	728
AccI	GTMKAC	1 cut(s)	12
AccIII	TCCGGA	1 cut(s)	797
AciI	CCGC	1 cut(s)	42
AclWI	GGATC	4 cut(s)	416, 842, 851, 921
AcsI	RAATTY	1 cut(s)	393
AcyI	GRCGYC	1 cut(s)	255
AfaI	GTAC	2 cut(s)	120, 882
AfeI	AGCGCT	1 cut(s)	500
AfiI	CCNNNNNNNGG	1 cut(s)	986
AgsI	TTSAA	5 cut(s)	505, 766, 868, 874, 962
AjnI	CCWGG	1 cut(s)	105
AjuI	GAANNNNNNNTTGG	2 cut(s)	426, 458
AluBI	AGCT	4 cut(s)	184, 223, 415, 776
AluI	AGCT	4 cut(s)	184, 223, 415, 776
Alw26I	GTCTC	1 cut(s)	764
AlwI	GGATC	4 cut(s)	416, 842, 851, 921
Ama87I	CYCGRG	2 cut(s)	750, 791
Aor13HI	TCCGGA	1 cut(s)	797
Aor51HI	AGCGCT	1 cut(s)	500
AoxI	GGCC	2 cut(s)	44, 364
ApeKI	GCWGC	2 cut(s)	269, 326
ApoI	RAATTY	1 cut(s)	393
Asp700I	GAANNNNTTC	1 cut(s)	777
AspLEI	GCGC	1 cut(s)	501
AspS9I	GGNCC	2 cut(s)	44, 364
AsuHPI	GGTGA	5 cut(s)	16, 17, 443, 599, 959
AsuII	TTCGAA	1 cut(s)	373
AvaI	CYCGRG	2 cut(s)	750, 791
BaeGI	GKGCMC	1 cut(s)	733
BaeI	ACNNNNGTAYC	2 cut(s)	793, 826
BanI	GGYRCC	1 cut(s)	728
BauI	CACGAG	1 cut(s)	204
BbvI	GCAGC	2 cut(s)	256, 338
BcgI	CGANNNNNNTGC	2 cut(s)	248, 282
BciT130I	CCWGG	1 cut(s)	107
BciVI	GTATCC	1 cut(s)	794
BclI	TGATCA	1 cut(s)	885
BcoDI	GTCTC	1 cut(s)	764
BfaI	CTAG	2 cut(s)	185, 297
BfoI	RGCGCY	1 cut(s)	502
BfuI	GTATCC	1 cut(s)	794
BisI	GCNGC	2 cut(s)	270, 327
BlsI	GCNGC	2 cut(s)	271, 328
Bme1390I	CCNGG	1 cut(s)	107
BmeT110I	CYCGRG	2 cut(s)	750, 791
BmgT120I	GGNCC	2 cut(s)	44, 364
BmiI	GGNNCC	1 cut(s)	730
BmrFI	CCNGG	1 cut(s)	107
BmsI	GCATC	2 cut(s)	256, 378
BplI	GAGNNNNNCTC	2 cut(s)	744, 776
Bpu14I	TTCGAA	1 cut(s)	373
Bsa29I	ATCGAT	2 cut(s)	90, 716
BsaHI	GRCGYC	1 cut(s)	255
BsaI	GGTCTC	1 cut(s)	764
BsaJI	CCNNGG	1 cut(s)	751
BsaWI	WCCGGW	1 cut(s)	797
Bsc4I	CCNNNNNNNGG	1 cut(s)	986
Bse1I	ACTGG	3 cut(s)	252, 322, 996
Bse3DI	GCAATG	1 cut(s)	646
BseAI	TCCGGA	1 cut(s)	797
BseBI	CCWGG	1 cut(s)	107
BseCI	ATCGAT	2 cut(s)	90, 716
BseDI	CCNNGG	1 cut(s)	751
BseLI	CCNNNNNNNGG	1 cut(s)	986
BseMI	GCAATG	1 cut(s)	646
BseMII	CTCAG	3 cut(s)	54, 570, 828
BseNI	ACTGG	3 cut(s)	252, 322, 996
BseSI	GKGCMC	1 cut(s)	733
BseXI	GCAGC	2 cut(s)	256, 338
BsgI	GTGCAG	1 cut(s)	357
BshFI	GGCC	2 cut(s)	46, 366
BshNI	GGYRCC	1 cut(s)	728
BshVI	ATCGAT	2 cut(s)	90, 716
BsiHKCI	CYCGRG	2 cut(s)	750, 791
BsiSI	CCGG	1 cut(s)	798
BslFI	GGGAC	1 cut(s)	560
BslI	CCNNNNNNNGG	1 cut(s)	986
BsmAI	GTCTC	1 cut(s)	764
BsmFI	GGGAC	1 cut(s)	560
BsnI	GGCC	2 cut(s)	46, 366
Bso31I	GGTCTC	1 cut(s)	764
BsoBI	CYCGRG	2 cut(s)	750, 791
Bsp119I	TTCGAA	1 cut(s)	373
Bsp1286I	GDGCHC	1 cut(s)	733
Bsp13I	TCCGGA	1 cut(s)	797
Bsp143I	GATC	6 cut(s)	87, 421, 847, 856, 885, 926
BspACI	CCGC	1 cut(s)	42
BspANI	GGCC	2 cut(s)	46, 366
BspCNI	CTCAG	3 cut(s)	55, 569, 829
BspDI	ATCGAT	2 cut(s)	90, 716
BspEI	TCCGGA	1 cut(s)	797
BspHI	TCATGA	2 cut(s)	613, 967
BspLI	GGNNCC	1 cut(s)	730
BspPI	GGATC	4 cut(s)	416, 842, 851, 921
BspT104I	TTCGAA	1 cut(s)	373
BspT107I	GGYRCC	1 cut(s)	728
BspTNI	GGTCTC	1 cut(s)	764
BsrDI	GCAATG	1 cut(s)	646
BsrI	ACTGG	3 cut(s)	252, 322, 996
BssECI	CCNNGG	1 cut(s)	751
BssMI	GATC	6 cut(s)	87, 421, 847, 856, 885, 926
BssNI	GRCGYC	1 cut(s)	255
BssSI	CACGAG	1 cut(s)	204
Bst2BI	CACGAG	1 cut(s)	204
Bst2UI	CCWGG	1 cut(s)	107
Bst4CI	ACNGT	2 cut(s)	454, 685
BstACI	GRCGYC	1 cut(s)	255
BstAPI	GCANNNNNTGC	1 cut(s)	641
BstBI	TTCGAA	1 cut(s)	373
BstC8I	GCNNGC	2 cut(s)	44, 637
BstDEI	CTNAG	4 cut(s)	63, 276, 556, 837
BstENI	CCTNNNNNAGG	1 cut(s)	984
BstH2I	RGCGCY	1 cut(s)	502
BstHHI	GCGC	1 cut(s)	501
BstKTI	GATC	6 cut(s)	90, 424, 850, 859, 888, 929
BstMAI	GTCTC	1 cut(s)	764
BstMBI	GATC	6 cut(s)	87, 421, 847, 856, 885, 926
BstMWI	GCNNNNNNNGC	4 cut(s)	229, 335, 412, 641
BstNI	CCWGG	1 cut(s)	107
BstSCI	CCNGG	1 cut(s)	105
BstSLI	GKGCMC	1 cut(s)	733
BstV1I	GCAGC	2 cut(s)	256, 338
BstX2I	RGATCY	2 cut(s)	421, 926
BstXI	CCANNNNNNTGG	1 cut(s)	578
BstYI	RGATCY	2 cut(s)	421, 926
Bsu15I	ATCGAT	2 cut(s)	90, 716
BsuI	GTATCC	1 cut(s)	794
BsuRI	GGCC	2 cut(s)	46, 366
BsuTUI	ATCGAT	2 cut(s)	90, 716
Cac8I	GCNNGC	2 cut(s)	44, 637
CciI	TCATGA	2 cut(s)	613, 967
CfoI	GCGC	1 cut(s)	501
Cfr13I	GGNCC	2 cut(s)	44, 364
ClaI	ATCGAT	2 cut(s)	90, 716
CseI	GACGC	1 cut(s)	244
Csp6I	GTAC	2 cut(s)	119, 881
CviAII	CATG	9 cut(s)	29, 178, 311, 333, 358, 614, 896, 931, 968
CviQI	GTAC	2 cut(s)	119, 881
DdeI	CTNAG	4 cut(s)	63, 276, 556, 837
DpnI	GATC	6 cut(s)	89, 423, 849, 858, 887, 928
DpnII	GATC	6 cut(s)	87, 421, 847, 856, 885, 926
DraI	TTTAAA	1 cut(s)	672
Eco31I	GGTCTC	1 cut(s)	764
Eco32I	GATATC	2 cut(s)	160, 622
Eco47III	AGCGCT	1 cut(s)	500
Eco88I	CYCGRG	2 cut(s)	750, 791
EcoNI	CCTNNNNNAGG	1 cut(s)	984
EcoRII	CCWGG	1 cut(s)	105
EcoRV	GATATC	2 cut(s)	160, 622
FaeI	CATG	9 cut(s)	32, 181, 314, 336, 361, 617, 899, 934, 971
FaqI	GGGAC	1 cut(s)	560
FatI	CATG	9 cut(s)	28, 177, 310, 332, 357, 613, 895, 930, 967
FauI	CCCGC	1 cut(s)	35
FbaI	TGATCA	1 cut(s)	885
FblI	GTMKAC	1 cut(s)	12
Fnu4HI	GCNGC	2 cut(s)	270, 327
Fsp4HI	GCNGC	2 cut(s)	270, 327
FspBI	CTAG	2 cut(s)	185, 297
GlaI	GCGC	1 cut(s)	500
GluI	GCNGC	2 cut(s)	270, 327
HaeII	RGCGCY	1 cut(s)	502
HaeIII	GGCC	2 cut(s)	46, 366
HapII	CCGG	1 cut(s)	798
HgaI	GACGC	1 cut(s)	244
HhaI	GCGC	1 cut(s)	501
Hin1I	GRCGYC	1 cut(s)	255
Hin1II	CATG	9 cut(s)	32, 181, 314, 336, 361, 617, 899, 934, 971
Hin6I	GCGC	1 cut(s)	499
HinP1I	GCGC	1 cut(s)	499
HincII	GTYRAC	3 cut(s)	13, 598, 1003
HindII	GTYRAC	3 cut(s)	13, 598, 1003
HindIII	AAGCTT	2 cut(s)	221, 413
HinfI	GANTC	3 cut(s)	301, 307, 794
HpaII	CCGG	1 cut(s)	798
HphI	GGTGA	5 cut(s)	16, 17, 443, 599, 959
Hpy166II	GTNNAC	4 cut(s)	13, 598, 697, 1003
Hpy188I	TCNGA	3 cut(s)	64, 306, 559
Hpy188III	TCNNGA	6 cut(s)	148, 614, 763, 798, 851, 968
Hpy8I	GTNNAC	4 cut(s)	13, 598, 697, 1003
Hpy99I	CGWCG	1 cut(s)	260
HpyAV	CCTTC	4 cut(s)	245, 377, 598, 965
HpyCH4III	ACNGT	2 cut(s)	454, 685
HpyF10VI	GCNNNNNNNGC	4 cut(s)	229, 335, 412, 641
HpyF3I	CTNAG	4 cut(s)	63, 276, 556, 837
Hsp92I	GRCGYC	1 cut(s)	255
Hsp92II	CATG	9 cut(s)	32, 181, 314, 336, 361, 617, 899, 934, 971
HspAI	GCGC	1 cut(s)	499
Kpn2I	TCCGGA	1 cut(s)	797
Ksp22I	TGATCA	1 cut(s)	885
Kzo9I	GATC	6 cut(s)	87, 421, 847, 856, 885, 926
Lsp1109I	GCAGC	2 cut(s)	256, 338
LweI	GCATC	2 cut(s)	256, 378
MaeI	CTAG	2 cut(s)	185, 297
MaeIII	GTNAC	2 cut(s)	587, 907
MalI	GATC	6 cut(s)	89, 423, 849, 858, 887, 928
MboI	GATC	6 cut(s)	87, 421, 847, 856, 885, 926
MboII	GAAGA	3 cut(s)	362, 572, 629
MfeI	CAATTG	1 cut(s)	426
MflI	RGATCY	2 cut(s)	421, 926
MhlI	GDGCHC	1 cut(s)	733
MluCI	AATT	6 cut(s)	261, 393, 426, 522, 541, 784
MlyI	GAGTC	2 cut(s)	316, 803
MmeI	TCCRAC	1 cut(s)	223
MnlI	CCTC	5 cut(s)	58, 340, 746, 800, 903
MroI	TCCGGA	1 cut(s)	797
MroXI	GAANNNNTTC	1 cut(s)	777
MseI	TTAA	2 cut(s)	288, 671
MspI	CCGG	1 cut(s)	798
MspR9I	CCNGG	1 cut(s)	107
MunI	CAATTG	1 cut(s)	426
MvaI	CCWGG	1 cut(s)	107
MwoI	GCNNNNNNNGC	4 cut(s)	229, 335, 412, 641
NdeII	GATC	6 cut(s)	87, 421, 847, 856, 885, 926
NlaIII	CATG	9 cut(s)	32, 181, 314, 336, 361, 617, 899, 934, 971
NlaIV	GGNNCC	1 cut(s)	730
NmuCI	GTSAC	1 cut(s)	587
NspV	TTCGAA	1 cut(s)	373
PaeR7I	CTCGAG	1 cut(s)	791
PagI	TCATGA	2 cut(s)	613, 967
PdmI	GAANNNNTTC	1 cut(s)	777
PfeI	GAWTC	1 cut(s)	301
PkrI	GCNGC	2 cut(s)	271, 328
PleI	GAGTC	2 cut(s)	315, 802
PpsI	GAGTC	2 cut(s)	315, 802
PsiI	TTATAA	1 cut(s)	227
Psp6I	CCWGG	1 cut(s)	105
PspGI	CCWGG	1 cut(s)	105
PspN4I	GGNNCC	1 cut(s)	730
PspPI	GGNCC	2 cut(s)	44, 364
PspXI	VCTCGAGB	1 cut(s)	791
PsuI	RGATCY	2 cut(s)	421, 926
RsaI	GTAC	2 cut(s)	120, 882
RsaNI	GTAC	2 cut(s)	119, 881
SalI	GTCGAC	1 cut(s)	11
SaqAI	TTAA	2 cut(s)	288, 671
SatI	GCNGC	2 cut(s)	270, 327
Sau3AI	GATC	6 cut(s)	87, 421, 847, 856, 885, 926
Sau96I	GGNCC	2 cut(s)	44, 364
SchI	GAGTC	2 cut(s)	316, 803
ScrFI	CCNGG	1 cut(s)	107
SduI	GDGCHC	1 cut(s)	733
SfaNI	GCATC	2 cut(s)	256, 378
Sfr274I	CTCGAG	1 cut(s)	791
SfuI	TTCGAA	1 cut(s)	373
SlaI	CTCGAG	1 cut(s)	791
SmlI	CTYRAG	1 cut(s)	791
SmoI	CTYRAG	1 cut(s)	791
Sse9I	AATT	6 cut(s)	261, 393, 426, 522, 541, 784
SsiI	CCGC	1 cut(s)	42
SspI	AATATT	3 cut(s)	83, 478, 745
SspMI	CTAG	2 cut(s)	185, 297
StyD4I	CCNGG	1 cut(s)	105
TaaI	ACNGT	2 cut(s)	454, 685
TaqI	TCGA	8 cut(s)	12, 90, 111, 147, 258, 373, 716, 792
TasI	AATT	6 cut(s)	261, 393, 426, 522, 541, 784
TatI	WGTACW	1 cut(s)	880
TfiI	GAWTC	1 cut(s)	301
Tru1I	TTAA	2 cut(s)	288, 671
Tru9I	TTAA	2 cut(s)	288, 671
TseFI	GTSAC	1 cut(s)	587
TseI	GCWGC	2 cut(s)	269, 326
Tsp45I	GTSAC	1 cut(s)	587
TspDTI	ATGAA	7 cut(s)	194, 233, 448, 630, 786, 956, 984
TspGWI	ACGGA	1 cut(s)	553
XagI	CCTNNNNNAGG	1 cut(s)	984
XapI	RAATTY	1 cut(s)	393
XhoI	CTCGAG	1 cut(s)	791
XmiI	GTMKAC	1 cut(s)	12
XmnI	GAANNNNTTC	1 cut(s)	777
XspI	CTAG	2 cut(s)	185, 297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.