Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0004500

Physical Location & Seq

Genomic Coordinates Forward (+)

39975330 .. 40000480

Gene Structure 25151 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG372200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGCATCACCTGCAGATAAAGCTGGCGGATCGAAATGCTTGCAGCTGCCGTGCTGATATCTTGATCAAGTCTGGGAGAATGGTTGATAACGACAAGAAAATCACCCATGTTCTTTTTTGCGGGCCACATTTCCCTGCTTCTCAGGATTACACGAGAGAATATTTGAACGATTACCCTTTTGTCCAGGTTGATGATGTACCACTTGCTGATGTGCCTGATGTTATCGAGAAGTATGATATCTGTATAGTGAAAAGCATGAAGTTAGATTTTAATGTCCTCTCTCGTGCAAAAAAGATGAAGCTTATAATGCAGTATGGTGTTGGACTAGAAGGCGTTGAAATTGATGCTGCGACTAAGTTTGGAATTAAAGTCGCTAGGATTCCGAGTCATGCAACTGGAAATGCAGCCTCATGTGCAGAAATGGCCATTTATCTCATGTTCGGCCTTCTCCGAAAGCAAAATGAGATGCAAATTTCTATAAAGCAGAGAAAGCTTGGAGACCCAATTGGTGAAACACTACTTGGAAAAACAGTCTTCATTTTAGGATATGGAAATATTGGAATGGAGTTGGCAAAGCGCTTGAAACCATTTGGTGTGAAAATTATTGCCACAAAACGGAATTGGGACACTCATTCAGAAGATTCATGCCAATCAAATGCGTTAGGTGACTTGGTTGACGAGAAGGGTGGTCATGAAGATATCCATTCATTTGCAAGCAATGCGGACATTGTTGTTTGTTGTTTGTGTTTAAATAGTGAAACAGTTGGCATTGTAAACACGTCATTTATATCATCGATGAGAAAGGGTGCCCTTTTAGTAAATATAGCCCGAGGGGGTCTCCTGAACTATGAAGCTGTTCTATATTACCTCGAGTCCGGACACTTAGGTGGCTTGGGCATTGATGTTGCTTGGACTGAGCCATTTGATCCTGATGATCCCATTTTGAAGTTCAATAATGTTCTGATCACACCTCATGTTGCAGGAGTTACCGAGTATTCTTTTAGATACATGTCAAAGGTAGTTGGTGATGTTGGCATTCAACTTCATGAAGGGAAGCCTTTGACAGGACTGGAGTTTGTCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003008 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006081 GO:0006082 GO:0007588 GO:0008150 GO:0008152 GO:0008465 GO:0009987 GO:0016043 GO:0016491 GO:0016614 GO:0016616 GO:0016618 GO:0019752 GO:0022607 GO:0030267 GO:0031406 GO:0032501 GO:0032787 GO:0036094 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043177 GO:0043436 GO:0043648 GO:0043933 GO:0044085 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046487 GO:0046983 GO:0048037 GO:0050661 GO:0050662 GO:0051259 GO:0051287 GO:0055114 GO:0065003 GO:0070402 GO:0071704 GO:0071840 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2-Hacid_dh 2-Hacid_dh_C

Protein Analysis

361

Amino Acids

39.83

Weight (kDa)

6.13

Isoelectric Point (pI)

29.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2-Hacid_dh	PF00389	48 - 264	1.5e-13	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
2-Hacid_dh_C	PF02826	144 - 327	2.4e-41	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72190
fragaria_vesca	FvH4_5g31330 FvH4_5g31330 FvH4_5g31330 FvH4_5g31330 FvH4_5g31330 FvH4_5g31330 FvH4_5g31330
malus_domestica	MD08G1217300.v1.1
prunus_persica	Prupe.1G556800_v2.0.a1 Prupe.1G556800_v2.0.a1 Prupe.1G556800_v2.0.a1 Prupe.1G556800_v2.0.a1 Prupe.1G556800_v2.0.a1 Prupe.1G556800_v2.0.a1
pyrus_communis	pycom08g18800
rosa_chinensis	RchiOBHm_Chr7g0226521 RchiOBHm_Chr7g0226551
rosa_laevigata	RLG00000001716 RLG00000001719
rosa_multiflora	Rmu_sc0001423.1_g000008
rosa_roxburghii	Rroxscaffold_3G00232710
rosa_rugosa	Rorug07G0237900 Rorug07G0237900 Rorug07G0238000 Rorug07G0238200
rosa_samantha	Rh7BG372200 Rh7BG372500 Rh7DG384300 Rh7DG384500
rosa_wichuraiana	Rw7G032370 Rw7G032390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	305
AarI	CACCTGC	1 cut(s)	18
Acc36I	ACCTGC	1 cut(s)	18
AccB1I	GGYRCC	1 cut(s)	806
AccIII	TCCGGA	1 cut(s)	875
AciI	CCGC	3 cut(s)	26, 120, 722
AclWI	GGATC	3 cut(s)	36, 920, 929
AcoI	YGGCCR	1 cut(s)	423
AcsI	RAATTY	1 cut(s)	471
AfaI	GTAC	1 cut(s)	198
AfeI	AGCGCT	1 cut(s)	578
AfiI	CCNNNNNNNGG	2 cut(s)	615, 1064
AflIII	ACRYGT	2 cut(s)	777, 1008
AgsI	TTSAA	6 cut(s)	166, 338, 583, 946, 952, 1040
AjiI	CACGTC	1 cut(s)	780
AjnI	CCWGG	1 cut(s)	183
AjuI	GAANNNNNNNTTGG	2 cut(s)	504, 536
AleI	CACNNNNGTG	1 cut(s)	885
AluBI	AGCT	5 cut(s)	22, 45, 301, 493, 854
AluI	AGCT	5 cut(s)	22, 45, 301, 493, 854
Alw26I	GTCTC	2 cut(s)	492, 842
AlwI	GGATC	3 cut(s)	36, 920, 929
Ama87I	CYCGRG	2 cut(s)	828, 869
Aor13HI	TCCGGA	1 cut(s)	875
Aor51HI	AGCGCT	1 cut(s)	578
AoxI	GGCC	3 cut(s)	122, 423, 442
ApeKI	GCWGC	4 cut(s)	42, 45, 347, 404
ApoI	RAATTY	1 cut(s)	471
Asp700I	GAANNNNTTC	1 cut(s)	855
AspLEI	GCGC	1 cut(s)	579
AspS9I	GGNCC	1 cut(s)	122
AsuHPI	GGTGA	4 cut(s)	94, 521, 677, 1037
AvaI	CYCGRG	2 cut(s)	828, 869
BaeGI	GKGCMC	1 cut(s)	811
BalI	TGGCCA	1 cut(s)	425
BanI	GGYRCC	1 cut(s)	806
BauI	CACGAG	2 cut(s)	151, 282
BbsI	GAAGAC	1 cut(s)	526
BbvI	GCAGC	4 cut(s)	32, 54, 334, 416
BceAI	ACGGC	1 cut(s)	33
BcgI	CGANNNNNNTGC	2 cut(s)	21, 55
BciT130I	CCWGG	1 cut(s)	185
BclI	TGATCA	2 cut(s)	63, 963
BcoDI	GTCTC	2 cut(s)	492, 842
BfaI	CTAG	2 cut(s)	326, 375
BfmI	CTRYAG	1 cut(s)	11
BfoI	RGCGCY	1 cut(s)	580
BfuAI	ACCTGC	1 cut(s)	18
BisI	GCNGC	4 cut(s)	43, 46, 348, 405
BlsI	GCNGC	4 cut(s)	44, 47, 349, 406
Bme1390I	CCNGG	1 cut(s)	185
BmeT110I	CYCGRG	2 cut(s)	828, 869
BmgBI	CACGTC	1 cut(s)	780
BmgT120I	GGNCC	1 cut(s)	122
BmiI	GGNNCC	1 cut(s)	808
BmrFI	CCNGG	1 cut(s)	185
BmsI	GCATC	3 cut(s)	13, 334, 456
BpiI	GAAGAC	1 cut(s)	526
BplI	GAGNNNNNCTC	2 cut(s)	822, 854
Bsa29I	ATCGAT	1 cut(s)	794
BsaI	GGTCTC	2 cut(s)	492, 842
BsaJI	CCNNGG	1 cut(s)	829
BsaWI	WCCGGW	1 cut(s)	875
Bsc4I	CCNNNNNNNGG	2 cut(s)	615, 1064
Bse1I	ACTGG	2 cut(s)	400, 1074
Bse3DI	GCAATG	1 cut(s)	724
BseAI	TCCGGA	1 cut(s)	875
BseBI	CCWGG	1 cut(s)	185
BseCI	ATCGAT	1 cut(s)	794
BseDI	CCNNGG	1 cut(s)	829
BseLI	CCNNNNNNNGG	2 cut(s)	615, 1064
BseMI	GCAATG	1 cut(s)	724
BseMII	CTCAG	2 cut(s)	155, 906
BseNI	ACTGG	2 cut(s)	400, 1074
BseSI	GKGCMC	1 cut(s)	811
BseXI	GCAGC	4 cut(s)	32, 54, 334, 416
BsgI	GTGCAG	1 cut(s)	435
BshFI	GGCC	3 cut(s)	124, 425, 444
BshNI	GGYRCC	1 cut(s)	806
BshVI	ATCGAT	1 cut(s)	794
BsiHKCI	CYCGRG	2 cut(s)	828, 869
BsiSI	CCGG	1 cut(s)	876
BslFI	GGGAC	1 cut(s)	638
BslI	CCNNNNNNNGG	2 cut(s)	615, 1064
BsmAI	GTCTC	2 cut(s)	492, 842
BsmFI	GGGAC	1 cut(s)	638
BsmI	GAATGC	1 cut(s)	1035
BsnI	GGCC	3 cut(s)	124, 425, 444
Bso31I	GGTCTC	2 cut(s)	492, 842
BsoBI	CYCGRG	2 cut(s)	828, 869
Bsp1286I	GDGCHC	1 cut(s)	811
Bsp13I	TCCGGA	1 cut(s)	875
Bsp143I	GATC	5 cut(s)	28, 63, 925, 934, 963
BspACI	CCGC	3 cut(s)	26, 120, 722
BspANI	GGCC	3 cut(s)	124, 425, 444
BspCNI	CTCAG	2 cut(s)	154, 907
BspDI	ATCGAT	1 cut(s)	794
BspEI	TCCGGA	1 cut(s)	875
BspHI	TCATGA	2 cut(s)	691, 1045
BspLI	GGNNCC	1 cut(s)	808
BspMAI	CTGCAG	1 cut(s)	15
BspMI	ACCTGC	1 cut(s)	18
BspPI	GGATC	3 cut(s)	36, 920, 929
BspT107I	GGYRCC	1 cut(s)	806
BspTNI	GGTCTC	2 cut(s)	492, 842
BsrDI	GCAATG	1 cut(s)	724
BsrI	ACTGG	2 cut(s)	400, 1074
BssECI	CCNNGG	1 cut(s)	829
BssMI	GATC	5 cut(s)	28, 63, 925, 934, 963
BssSI	CACGAG	2 cut(s)	151, 282
Bst2BI	CACGAG	2 cut(s)	151, 282
Bst2UI	CCWGG	1 cut(s)	185
Bst4CI	ACNGT	2 cut(s)	532, 763
BstAPI	GCANNNNNTGC	2 cut(s)	10, 719
BstC8I	GCNNGC	4 cut(s)	24, 40, 122, 715
BstDEI	CTNAG	4 cut(s)	141, 354, 883, 915
BstENI	CCTNNNNNAGG	1 cut(s)	1062
BstH2I	RGCGCY	1 cut(s)	580
BstHHI	GCGC	1 cut(s)	579
BstKTI	GATC	5 cut(s)	31, 66, 928, 937, 966
BstMAI	GTCTC	2 cut(s)	492, 842
BstMBI	GATC	5 cut(s)	28, 63, 925, 934, 963
BstMWI	GCNNNNNNNGC	7 cut(s)	10, 19, 307, 413, 422, 490, 719
BstNI	CCWGG	1 cut(s)	185
BstNSI	RCATGY	1 cut(s)	1012
BstSCI	CCNGG	1 cut(s)	183
BstSFI	CTRYAG	1 cut(s)	11
BstSLI	GKGCMC	1 cut(s)	811
BstV1I	GCAGC	4 cut(s)	32, 54, 334, 416
BstV2I	GAAGAC	1 cut(s)	526
Bsu15I	ATCGAT	1 cut(s)	794
BsuRI	GGCC	3 cut(s)	124, 425, 444
BsuTUI	ATCGAT	1 cut(s)	794
BtrI	CACGTC	1 cut(s)	780
BveI	ACCTGC	1 cut(s)	18
Cac8I	GCNNGC	4 cut(s)	24, 40, 122, 715
CciI	TCATGA	2 cut(s)	691, 1045
CfoI	GCGC	1 cut(s)	579
Cfr13I	GGNCC	1 cut(s)	122
ClaI	ATCGAT	1 cut(s)	794
Csp6I	GTAC	1 cut(s)	197
CviQI	GTAC	1 cut(s)	197
DdeI	CTNAG	4 cut(s)	141, 354, 883, 915
DpnI	GATC	5 cut(s)	30, 65, 927, 936, 965
DpnII	GATC	5 cut(s)	28, 63, 925, 934, 963
DraI	TTTAAA	1 cut(s)	750
EaeI	YGGCCR	1 cut(s)	423
EciI	GGCGGA	1 cut(s)	41
Eco31I	GGTCTC	2 cut(s)	492, 842
Eco32I	GATATC	3 cut(s)	58, 238, 700
Eco47III	AGCGCT	1 cut(s)	578
Eco88I	CYCGRG	2 cut(s)	828, 869
EcoNI	CCTNNNNNAGG	1 cut(s)	1062
EcoRII	CCWGG	1 cut(s)	183
EcoRV	GATATC	3 cut(s)	58, 238, 700
EcoT22I	ATGCAT	1 cut(s)	6
FaqI	GGGAC	1 cut(s)	638
FauI	CCCGC	1 cut(s)	113
FbaI	TGATCA	2 cut(s)	63, 963
Fnu4HI	GCNGC	4 cut(s)	43, 46, 348, 405
Fsp4HI	GCNGC	4 cut(s)	43, 46, 348, 405
FspBI	CTAG	2 cut(s)	326, 375
GlaI	GCGC	1 cut(s)	578
GluI	GCNGC	4 cut(s)	43, 46, 348, 405
HaeII	RGCGCY	1 cut(s)	580
HaeIII	GGCC	3 cut(s)	124, 425, 444
HapII	CCGG	1 cut(s)	876
HhaI	GCGC	1 cut(s)	579
Hin6I	GCGC	1 cut(s)	577
HinP1I	GCGC	1 cut(s)	577
HincII	GTYRAC	2 cut(s)	676, 1081
HindII	GTYRAC	2 cut(s)	676, 1081
HindIII	AAGCTT	2 cut(s)	299, 491
HinfI	GANTC	4 cut(s)	379, 385, 641, 872
HpaII	CCGG	1 cut(s)	876
HphI	GGTGA	4 cut(s)	94, 521, 677, 1037
Hpy166II	GTNNAC	3 cut(s)	676, 775, 1081
Hpy188I	TCNGA	4 cut(s)	384, 452, 637, 963
Hpy188III	TCNNGA	8 cut(s)	61, 143, 226, 692, 841, 876, 929, 1046
Hpy8I	GTNNAC	3 cut(s)	676, 775, 1081
HpyAV	CCTTC	4 cut(s)	323, 455, 676, 1043
HpyCH4III	ACNGT	2 cut(s)	532, 763
HpyCH4IV	ACGT	1 cut(s)	779
HpyF10VI	GCNNNNNNNGC	7 cut(s)	10, 19, 307, 413, 422, 490, 719
HpyF3I	CTNAG	4 cut(s)	141, 354, 883, 915
HpySE526I	ACGT	1 cut(s)	779
HspAI	GCGC	1 cut(s)	577
Kpn2I	TCCGGA	1 cut(s)	875
Ksp22I	TGATCA	2 cut(s)	63, 963
Kzo9I	GATC	5 cut(s)	28, 63, 925, 934, 963
Lsp1109I	GCAGC	4 cut(s)	32, 54, 334, 416
LweI	GCATC	3 cut(s)	13, 334, 456
MaeI	CTAG	2 cut(s)	326, 375
MaeII	ACGT	1 cut(s)	779
MaeIII	GTNAC	2 cut(s)	665, 985
MalI	GATC	5 cut(s)	30, 65, 927, 936, 965
MboI	GATC	5 cut(s)	28, 63, 925, 934, 963
MboII	GAAGA	3 cut(s)	526, 650, 707
MfeI	CAATTG	1 cut(s)	504
MhlI	GDGCHC	1 cut(s)	811
MlsI	TGGCCA	1 cut(s)	425
MluCI	AATT	6 cut(s)	339, 363, 471, 504, 600, 619
MluNI	TGGCCA	1 cut(s)	425
MlyI	GAGTC	2 cut(s)	394, 881
MmeI	TCCRAC	1 cut(s)	301
MnlI	CCTC	5 cut(s)	287, 418, 824, 878, 981
Mox20I	TGGCCA	1 cut(s)	425
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	1 cut(s)	875
MroXI	GAANNNNTTC	1 cut(s)	855
MscI	TGGCCA	1 cut(s)	425
MseI	TTAA	3 cut(s)	270, 366, 749
MslI	CAYNNNNRTG	1 cut(s)	885
Msp20I	TGGCCA	1 cut(s)	425
MspA1I	CMGCKG	1 cut(s)	45
MspI	CCGG	1 cut(s)	876
MspR9I	CCNGG	1 cut(s)	185
MunI	CAATTG	1 cut(s)	504
Mva1269I	GAATGC	1 cut(s)	1035
MvaI	CCWGG	1 cut(s)	185
MwoI	GCNNNNNNNGC	7 cut(s)	10, 19, 307, 413, 422, 490, 719
NdeII	GATC	5 cut(s)	28, 63, 925, 934, 963
NlaIV	GGNNCC	1 cut(s)	808
NmuCI	GTSAC	1 cut(s)	665
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	1012
OliI	CACNNNNGTG	1 cut(s)	885
PaeR7I	CTCGAG	1 cut(s)	869
PagI	TCATGA	2 cut(s)	691, 1045
PaqCI	CACCTGC	1 cut(s)	18
PciI	ACATGT	1 cut(s)	1008
PctI	GAATGC	1 cut(s)	1035
PdmI	GAANNNNTTC	1 cut(s)	855
PfeI	GAWTC	2 cut(s)	379, 641
PkrI	GCNGC	4 cut(s)	44, 47, 349, 406
PleI	GAGTC	2 cut(s)	393, 880
PpsI	GAGTC	2 cut(s)	393, 880
PscI	ACATGT	1 cut(s)	1008
PsiI	TTATAA	1 cut(s)	305
Psp6I	CCWGG	1 cut(s)	183
PspGI	CCWGG	1 cut(s)	183
PspN4I	GGNNCC	1 cut(s)	808
PspPI	GGNCC	1 cut(s)	122
PspXI	VCTCGAGB	1 cut(s)	869
PstI	CTGCAG	1 cut(s)	15
PvuII	CAGCTG	1 cut(s)	45
RsaI	GTAC	1 cut(s)	198
RsaNI	GTAC	1 cut(s)	197
RseI	CAYNNNNRTG	1 cut(s)	885
SaqAI	TTAA	3 cut(s)	270, 366, 749
SatI	GCNGC	4 cut(s)	43, 46, 348, 405
Sau3AI	GATC	5 cut(s)	28, 63, 925, 934, 963
Sau96I	GGNCC	1 cut(s)	122
SchI	GAGTC	2 cut(s)	394, 881
ScrFI	CCNGG	1 cut(s)	185
SduI	GDGCHC	1 cut(s)	811
SfaNI	GCATC	3 cut(s)	13, 334, 456
SfcI	CTRYAG	1 cut(s)	11
Sfr274I	CTCGAG	1 cut(s)	869
SlaI	CTCGAG	1 cut(s)	869
SmiMI	CAYNNNNRTG	1 cut(s)	885
SmlI	CTYRAG	1 cut(s)	869
SmoI	CTYRAG	1 cut(s)	869
Sse9I	AATT	6 cut(s)	339, 363, 471, 504, 600, 619
SsiI	CCGC	3 cut(s)	26, 120, 722
SspI	AATATT	2 cut(s)	161, 556
SspMI	CTAG	2 cut(s)	326, 375
StyD4I	CCNGG	1 cut(s)	183
TaaI	ACNGT	2 cut(s)	532, 763
TaiI	ACGT	1 cut(s)	782
TaqI	TCGA	4 cut(s)	31, 225, 794, 870
TasI	AATT	6 cut(s)	339, 363, 471, 504, 600, 619
TfiI	GAWTC	2 cut(s)	379, 641
Tru1I	TTAA	3 cut(s)	270, 366, 749
Tru9I	TTAA	3 cut(s)	270, 366, 749
TseFI	GTSAC	1 cut(s)	665
TseI	GCWGC	4 cut(s)	42, 45, 347, 404
Tsp45I	GTSAC	1 cut(s)	665
TspDTI	ATGAA	9 cut(s)	272, 311, 526, 633, 696, 708, 864, 1034, 1062
TspGWI	ACGGA	1 cut(s)	631
XagI	CCTNNNNNAGG	1 cut(s)	1062
XapI	RAATTY	1 cut(s)	471
XceI	RCATGY	1 cut(s)	1012
XhoI	CTCGAG	1 cut(s)	869
XmnI	GAANNNNTTC	1 cut(s)	855
XspI	CTAG	2 cut(s)	326, 375
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.