Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0004500

Physical Location & Seq

Genomic Coordinates Forward (+)

46960195 .. 46979802

Gene Structure 19608 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G032370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGAATGATGTGTTCAAGCAAAAAACCTTTAGAGCAACTAAAAAACACTGCCGTGCTGATATCTTGATCAAGTCTGGGAGAATGGTGGATAACAACAAGAAAATCACCAATGTTCTTTTTTGCGGGCCACATTTCCCTGCTTCTCAGGATTACACGAGAGAATATTTGAACGATTACCCTTTTGTCCAGGTTGATGATGTACCACTTGCTGATGTGCCTGATGTTATCGAGAAGTATGATATCTGTATAGTGAAAAGCATGAAGTTAGATTTTAATGTCCTCTCTCGTGCAAAAAAGATGAAGCTTATAATGCAGTATGGTGTTGGACTGGAAGGCGTTGAAATTGATGCCGCGACTAAGTTTGGAATTAAAGTCGCTAGGATTCCGAGTCATGCAACTGGAAATGCAGCCTCATGTGCAGAAATGGCCATTTATCTCATGTTGGGCCTTCTCCGAAAGCAAAATGAGATGCAAATTTCTATAAAGCAGAGAAAGCTTGGAGACCCAATGGGTGAAACACTACTTGGAAAAACAGTCTTCATTTTAGGATATGGAAATATTGGAATGGAGTTGGCAAAGCGCTTGAAACCATTTGGTGTGAAAATTATTGCCACAAAACGGAATTGGGACACTCATTCAGAAGATTCGTGCCAGTCAAATGGTGACTTGGTTGACGAGAAGGGTGGTCATGAAGACATCCATTCATTTGCAAGCAATGCGGACATCGTTGTTTGTTGTTTGCTTTTAAATAGTGAAATAGTTAGCATTGTAAACACGTCATTTATATCATCGATGAGAAAGGGTGCCCTTTTAGTAAATATAGCCCGAGGGGGTCTGCTGAACTATGAAGCTGTTCTATATTACCTCGAGTCCGGACACTTAGGTGGCTTGGGCATTGATGTTGCTTGGACTGAGCCATTTGATCCTGATGATCCCATTTTGAAGTTCAATAATGTTCTGATCACACCTCATGTTGCAGGAGCTACCGAGTATTCTTTTAGATCCATGTCAAAGGTAGTTGGTGATGTTGGCATTCAACTTCATGAAGGGAAGCCTTTGACAGGACTGGAGTTTGTCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003008 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006081 GO:0006082 GO:0007588 GO:0008150 GO:0008152 GO:0008465 GO:0009987 GO:0016043 GO:0016491 GO:0016614 GO:0016616 GO:0016618 GO:0019752 GO:0022607 GO:0030267 GO:0031406 GO:0032501 GO:0032787 GO:0036094 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043177 GO:0043436 GO:0043648 GO:0043933 GO:0044085 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046487 GO:0046983 GO:0048037 GO:0050661 GO:0050662 GO:0051259 GO:0051287 GO:0055114 GO:0065003 GO:0070402 GO:0071704 GO:0071840 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2-Hacid_dh 2-Hacid_dh_C

Protein Analysis

360

Amino Acids

39.79

Weight (kDa)

6.76

Isoelectric Point (pI)

26.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2-Hacid_dh	PF00389	49 - 340	5.4e-14	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
2-Hacid_dh_C	PF02826	145 - 326	9.9e-41	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72190
fragaria_vesca	FvH4_5g31330 FvH4_5g31330 FvH4_5g31330 FvH4_5g31330 FvH4_5g31330 FvH4_5g31330 FvH4_5g31330
malus_domestica	MD08G1217300.v1.1
prunus_persica	Prupe.1G556800_v2.0.a1 Prupe.1G556800_v2.0.a1 Prupe.1G556800_v2.0.a1 Prupe.1G556800_v2.0.a1 Prupe.1G556800_v2.0.a1 Prupe.1G556800_v2.0.a1
pyrus_communis	pycom08g18800
rosa_chinensis	RchiOBHm_Chr7g0226521 RchiOBHm_Chr7g0226551
rosa_laevigata	RLG00000001716 RLG00000001719
rosa_multiflora	Rmu_sc0001423.1_g000008
rosa_roxburghii	Rroxscaffold_3G00232710
rosa_rugosa	Rorug07G0237900 Rorug07G0237900 Rorug07G0238000 Rorug07G0238200
rosa_samantha	Rh7BG372200 Rh7BG372500 Rh7DG384300 Rh7DG384500
rosa_wichuraiana	Rw7G032370 Rw7G032390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	308
AccB1I	GGYRCC	1 cut(s)	803
AccII	CGCG	1 cut(s)	353
AccIII	TCCGGA	1 cut(s)	872
AciI	CCGC	3 cut(s)	123, 351, 719
AclWI	GGATC	3 cut(s)	917, 926, 996
AcoI	YGGCCR	1 cut(s)	426
AcsI	RAATTY	1 cut(s)	474
AfaI	GTAC	1 cut(s)	201
AfeI	AGCGCT	1 cut(s)	581
AfiI	CCNNNNNNNGG	2 cut(s)	618, 1061
AflIII	ACRYGT	1 cut(s)	774
AgsI	TTSAA	7 cut(s)	16, 169, 341, 586, 943, 949, 1037
AjiI	CACGTC	1 cut(s)	777
AjnI	CCWGG	1 cut(s)	186
AjuI	GAANNNNNNNTTGG	2 cut(s)	507, 539
AleI	CACNNNNGTG	2 cut(s)	51, 882
AluBI	AGCT	4 cut(s)	304, 496, 851, 983
AluI	AGCT	4 cut(s)	304, 496, 851, 983
Alw26I	GTCTC	1 cut(s)	495
AlwI	GGATC	3 cut(s)	917, 926, 996
Ama87I	CYCGRG	2 cut(s)	825, 866
Aor13HI	TCCGGA	1 cut(s)	872
Aor51HI	AGCGCT	1 cut(s)	581
AoxI	GGCC	3 cut(s)	125, 426, 445
ApeKI	GCWGC	1 cut(s)	407
ApoI	RAATTY	1 cut(s)	474
Asp700I	GAANNNNTTC	1 cut(s)	852
AspLEI	GCGC	1 cut(s)	582
AspS9I	GGNCC	2 cut(s)	125, 445
AsuHPI	GGTGA	4 cut(s)	97, 524, 674, 1034
AvaI	CYCGRG	2 cut(s)	825, 866
BaeGI	GKGCMC	1 cut(s)	808
BalI	TGGCCA	1 cut(s)	428
BanI	GGYRCC	1 cut(s)	803
BauI	CACGAG	2 cut(s)	154, 285
BbsI	GAAGAC	2 cut(s)	529, 699
BbvI	GCAGC	1 cut(s)	419
BceAI	ACGGC	1 cut(s)	36
BciT130I	CCWGG	1 cut(s)	188
BclI	TGATCA	2 cut(s)	66, 960
BcoDI	GTCTC	1 cut(s)	495
BfaI	CTAG	1 cut(s)	378
BfoI	RGCGCY	1 cut(s)	583
BisI	GCNGC	2 cut(s)	351, 408
BlsI	GCNGC	2 cut(s)	352, 409
Bme1390I	CCNGG	1 cut(s)	188
BmeT110I	CYCGRG	2 cut(s)	825, 866
BmgBI	CACGTC	1 cut(s)	777
BmgT120I	GGNCC	2 cut(s)	125, 445
BmiI	GGNNCC	1 cut(s)	805
BmrFI	CCNGG	1 cut(s)	188
BmsI	GCATC	2 cut(s)	337, 459
BpiI	GAAGAC	2 cut(s)	529, 699
Bsa29I	ATCGAT	1 cut(s)	791
BsaI	GGTCTC	1 cut(s)	495
BsaJI	CCNNGG	1 cut(s)	826
BsaWI	WCCGGW	1 cut(s)	872
Bsc4I	CCNNNNNNNGG	2 cut(s)	618, 1061
Bse1I	ACTGG	4 cut(s)	333, 403, 652, 1071
Bse3DI	GCAATG	1 cut(s)	721
BseAI	TCCGGA	1 cut(s)	872
BseBI	CCWGG	1 cut(s)	188
BseCI	ATCGAT	1 cut(s)	791
BseDI	CCNNGG	1 cut(s)	826
BseGI	GGATG	1 cut(s)	696
BseLI	CCNNNNNNNGG	2 cut(s)	618, 1061
BseMI	GCAATG	1 cut(s)	721
BseMII	CTCAG	2 cut(s)	158, 903
BseNI	ACTGG	4 cut(s)	333, 403, 652, 1071
BseSI	GKGCMC	1 cut(s)	808
BseXI	GCAGC	1 cut(s)	419
BsgI	GTGCAG	1 cut(s)	438
Bsh1236I	CGCG	1 cut(s)	353
BshFI	GGCC	3 cut(s)	127, 428, 447
BshNI	GGYRCC	1 cut(s)	803
BshVI	ATCGAT	1 cut(s)	791
BsiHKCI	CYCGRG	2 cut(s)	825, 866
BsiSI	CCGG	1 cut(s)	873
BslFI	GGGAC	1 cut(s)	641
BslI	CCNNNNNNNGG	2 cut(s)	618, 1061
BsmAI	GTCTC	1 cut(s)	495
BsmFI	GGGAC	1 cut(s)	641
BsmI	GAATGC	1 cut(s)	1032
BsnI	GGCC	3 cut(s)	127, 428, 447
Bso31I	GGTCTC	1 cut(s)	495
BsoBI	CYCGRG	2 cut(s)	825, 866
Bsp1286I	GDGCHC	1 cut(s)	808
Bsp13I	TCCGGA	1 cut(s)	872
Bsp143I	GATC	5 cut(s)	66, 922, 931, 960, 1001
BspACI	CCGC	3 cut(s)	123, 351, 719
BspANI	GGCC	3 cut(s)	127, 428, 447
BspCNI	CTCAG	2 cut(s)	157, 904
BspDI	ATCGAT	1 cut(s)	791
BspEI	TCCGGA	1 cut(s)	872
BspFNI	CGCG	1 cut(s)	353
BspHI	TCATGA	2 cut(s)	688, 1042
BspLI	GGNNCC	1 cut(s)	805
BspPI	GGATC	3 cut(s)	917, 926, 996
BspT107I	GGYRCC	1 cut(s)	803
BspTNI	GGTCTC	1 cut(s)	495
BsrDI	GCAATG	1 cut(s)	721
BsrI	ACTGG	4 cut(s)	333, 403, 652, 1071
BssECI	CCNNGG	1 cut(s)	826
BssMI	GATC	5 cut(s)	66, 922, 931, 960, 1001
BssSI	CACGAG	2 cut(s)	154, 285
Bst2BI	CACGAG	2 cut(s)	154, 285
Bst2UI	CCWGG	1 cut(s)	188
Bst4CI	ACNGT	1 cut(s)	535
BstAPI	GCANNNNNTGC	1 cut(s)	716
BstC8I	GCNNGC	2 cut(s)	125, 712
BstDEI	CTNAG	4 cut(s)	144, 357, 880, 912
BstENI	CCTNNNNNAGG	1 cut(s)	1059
BstF5I	GGATG	1 cut(s)	696
BstFNI	CGCG	1 cut(s)	353
BstH2I	RGCGCY	1 cut(s)	583
BstHHI	GCGC	1 cut(s)	582
BstKTI	GATC	5 cut(s)	69, 925, 934, 963, 1004
BstMAI	GTCTC	1 cut(s)	495
BstMBI	GATC	5 cut(s)	66, 922, 931, 960, 1001
BstMWI	GCNNNNNNNGC	5 cut(s)	310, 416, 425, 493, 716
BstNI	CCWGG	1 cut(s)	188
BstSCI	CCNGG	1 cut(s)	186
BstSLI	GKGCMC	1 cut(s)	808
BstUI	CGCG	1 cut(s)	353
BstV1I	GCAGC	1 cut(s)	419
BstV2I	GAAGAC	2 cut(s)	529, 699
BstX2I	RGATCY	1 cut(s)	1001
BstXI	CCANNNNNNTGG	1 cut(s)	659
BstYI	RGATCY	1 cut(s)	1001
Bsu15I	ATCGAT	1 cut(s)	791
BsuRI	GGCC	3 cut(s)	127, 428, 447
BsuTUI	ATCGAT	1 cut(s)	791
BtrI	CACGTC	1 cut(s)	777
BtsCI	GGATG	1 cut(s)	696
BtsI	GCAGTG	1 cut(s)	46
BtsIMutI	CAGTG	1 cut(s)	46
Cac8I	GCNNGC	2 cut(s)	125, 712
CciI	TCATGA	2 cut(s)	688, 1042
CfoI	GCGC	1 cut(s)	582
Cfr13I	GGNCC	2 cut(s)	125, 445
ClaI	ATCGAT	1 cut(s)	791
Csp6I	GTAC	1 cut(s)	200
CviAII	CATG	8 cut(s)	259, 392, 414, 439, 689, 971, 1006, 1043
CviQI	GTAC	1 cut(s)	200
DdeI	CTNAG	4 cut(s)	144, 357, 880, 912
DpnI	GATC	5 cut(s)	68, 924, 933, 962, 1003
DpnII	GATC	5 cut(s)	66, 922, 931, 960, 1001
DraI	TTTAAA	1 cut(s)	747
EaeI	YGGCCR	1 cut(s)	426
Eco31I	GGTCTC	1 cut(s)	495
Eco32I	GATATC	2 cut(s)	61, 241
Eco47III	AGCGCT	1 cut(s)	581
Eco88I	CYCGRG	2 cut(s)	825, 866
EcoNI	CCTNNNNNAGG	1 cut(s)	1059
EcoRII	CCWGG	1 cut(s)	186
EcoRV	GATATC	2 cut(s)	61, 241
FaeI	CATG	8 cut(s)	262, 395, 417, 442, 692, 974, 1009, 1046
FaqI	GGGAC	1 cut(s)	641
FatI	CATG	8 cut(s)	258, 391, 413, 438, 688, 970, 1005, 1042
FauI	CCCGC	1 cut(s)	116
FbaI	TGATCA	2 cut(s)	66, 960
Fnu4HI	GCNGC	2 cut(s)	351, 408
FokI	GGATG	1 cut(s)	683
Fsp4HI	GCNGC	2 cut(s)	351, 408
FspBI	CTAG	1 cut(s)	378
GlaI	GCGC	1 cut(s)	581
GluI	GCNGC	2 cut(s)	351, 408
HaeII	RGCGCY	1 cut(s)	583
HaeIII	GGCC	3 cut(s)	127, 428, 447
HapII	CCGG	1 cut(s)	873
HhaI	GCGC	1 cut(s)	582
Hin1II	CATG	8 cut(s)	262, 395, 417, 442, 692, 974, 1009, 1046
Hin6I	GCGC	1 cut(s)	580
HinP1I	GCGC	1 cut(s)	580
HincII	GTYRAC	2 cut(s)	673, 1078
HindII	GTYRAC	2 cut(s)	673, 1078
HindIII	AAGCTT	2 cut(s)	302, 494
HinfI	GANTC	4 cut(s)	382, 388, 644, 869
HpaII	CCGG	1 cut(s)	873
HphI	GGTGA	4 cut(s)	97, 524, 674, 1034
Hpy166II	GTNNAC	3 cut(s)	673, 772, 1078
Hpy188I	TCNGA	4 cut(s)	387, 455, 640, 960
Hpy188III	TCNNGA	7 cut(s)	64, 146, 229, 689, 873, 926, 1043
Hpy8I	GTNNAC	3 cut(s)	673, 772, 1078
HpyAV	CCTTC	4 cut(s)	326, 458, 673, 1040
HpyCH4III	ACNGT	1 cut(s)	535
HpyCH4IV	ACGT	1 cut(s)	776
HpyCH4V	TGCA	8 cut(s)	290, 313, 395, 407, 419, 472, 710, 977
HpyF10VI	GCNNNNNNNGC	5 cut(s)	310, 416, 425, 493, 716
HpyF3I	CTNAG	4 cut(s)	144, 357, 880, 912
HpySE526I	ACGT	1 cut(s)	776
Hsp92II	CATG	8 cut(s)	262, 395, 417, 442, 692, 974, 1009, 1046
HspAI	GCGC	1 cut(s)	580
Kpn2I	TCCGGA	1 cut(s)	872
Ksp22I	TGATCA	2 cut(s)	66, 960
Kzo9I	GATC	5 cut(s)	66, 922, 931, 960, 1001
LmnI	GCTCC	1 cut(s)	980
Lsp1109I	GCAGC	1 cut(s)	419
LweI	GCATC	2 cut(s)	337, 459
MaeI	CTAG	1 cut(s)	378
MaeII	ACGT	1 cut(s)	776
MaeIII	GTNAC	1 cut(s)	662
MalI	GATC	5 cut(s)	68, 924, 933, 962, 1003
MboI	GATC	5 cut(s)	66, 922, 931, 960, 1001
MboII	GAAGA	3 cut(s)	529, 653, 704
MflI	RGATCY	1 cut(s)	1001
MhlI	GDGCHC	1 cut(s)	808
MlsI	TGGCCA	1 cut(s)	428
MluCI	AATT	5 cut(s)	342, 366, 474, 603, 622
MluNI	TGGCCA	1 cut(s)	428
MlyI	GAGTC	2 cut(s)	397, 878
MmeI	TCCRAC	1 cut(s)	304
MnlI	CCTC	5 cut(s)	290, 421, 821, 875, 978
Mox20I	TGGCCA	1 cut(s)	428
MroI	TCCGGA	1 cut(s)	872
MroXI	GAANNNNTTC	1 cut(s)	852
MscI	TGGCCA	1 cut(s)	428
MseI	TTAA	3 cut(s)	273, 369, 746
MslI	CAYNNNNRTG	2 cut(s)	51, 882
Msp20I	TGGCCA	1 cut(s)	428
MspI	CCGG	1 cut(s)	873
MspR9I	CCNGG	1 cut(s)	188
Mva1269I	GAATGC	1 cut(s)	1032
MvaI	CCWGG	1 cut(s)	188
MvnI	CGCG	1 cut(s)	353
MwoI	GCNNNNNNNGC	5 cut(s)	310, 416, 425, 493, 716
NdeII	GATC	5 cut(s)	66, 922, 931, 960, 1001
NlaIII	CATG	8 cut(s)	262, 395, 417, 442, 692, 974, 1009, 1046
NlaIV	GGNNCC	1 cut(s)	805
NmuCI	GTSAC	1 cut(s)	662
OliI	CACNNNNGTG	2 cut(s)	51, 882
PaeR7I	CTCGAG	1 cut(s)	866
PagI	TCATGA	2 cut(s)	688, 1042
PctI	GAATGC	1 cut(s)	1032
PdmI	GAANNNNTTC	1 cut(s)	852
PfeI	GAWTC	2 cut(s)	382, 644
PkrI	GCNGC	2 cut(s)	352, 409
PleI	GAGTC	2 cut(s)	396, 877
PpsI	GAGTC	2 cut(s)	396, 877
PsiI	TTATAA	1 cut(s)	308
Psp6I	CCWGG	1 cut(s)	186
PspGI	CCWGG	1 cut(s)	186
PspN4I	GGNNCC	1 cut(s)	805
PspPI	GGNCC	2 cut(s)	125, 445
PspXI	VCTCGAGB	1 cut(s)	866
PsuI	RGATCY	1 cut(s)	1001
RsaI	GTAC	1 cut(s)	201
RsaNI	GTAC	1 cut(s)	200
RseI	CAYNNNNRTG	2 cut(s)	51, 882
SaqAI	TTAA	3 cut(s)	273, 369, 746
SatI	GCNGC	2 cut(s)	351, 408
Sau3AI	GATC	5 cut(s)	66, 922, 931, 960, 1001
Sau96I	GGNCC	2 cut(s)	125, 445
SchI	GAGTC	2 cut(s)	397, 878
ScrFI	CCNGG	1 cut(s)	188
SduI	GDGCHC	1 cut(s)	808
SfaNI	GCATC	2 cut(s)	337, 459
Sfr274I	CTCGAG	1 cut(s)	866
SlaI	CTCGAG	1 cut(s)	866
SmiMI	CAYNNNNRTG	2 cut(s)	51, 882
SmlI	CTYRAG	1 cut(s)	866
SmoI	CTYRAG	1 cut(s)	866
Sse9I	AATT	5 cut(s)	342, 366, 474, 603, 622
SsiI	CCGC	3 cut(s)	123, 351, 719
SspI	AATATT	2 cut(s)	164, 559
SspMI	CTAG	1 cut(s)	378
StyD4I	CCNGG	1 cut(s)	186
TaaI	ACNGT	1 cut(s)	535
TaiI	ACGT	1 cut(s)	779
TaqI	TCGA	3 cut(s)	228, 791, 867
TasI	AATT	5 cut(s)	342, 366, 474, 603, 622
TauI	GCSGC	1 cut(s)	353
TfiI	GAWTC	2 cut(s)	382, 644
Tru1I	TTAA	3 cut(s)	273, 369, 746
Tru9I	TTAA	3 cut(s)	273, 369, 746
TscAI	CASTG	1 cut(s)	53
TseFI	GTSAC	1 cut(s)	662
TseI	GCWGC	1 cut(s)	407
Tsp45I	GTSAC	1 cut(s)	662
TspDTI	ATGAA	9 cut(s)	17, 275, 314, 529, 693, 705, 861, 1031, 1059
TspGWI	ACGGA	1 cut(s)	634
TspRI	CASTG	1 cut(s)	53
XagI	CCTNNNNNAGG	1 cut(s)	1059
XapI	RAATTY	1 cut(s)	474
XhoI	CTCGAG	1 cut(s)	866
XmnI	GAANNNNTTC	1 cut(s)	852
XspI	CTAG	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.