Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004500

Physical Location & Seq

Genomic Coordinates Forward (+)

21865329 .. 21865736

Gene Structure 408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0238000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGTCCATGTTTGGAGTTAAAAGACTCATATTTTTTTGCTGCTCACACCTTCAAGCTTTGGAGATCAGGGACAACGAAATCGTCGGAGAATTGCCGGAATTTTCATTGGACCGTATCGATGTTGAAGCCGCCATCGAAATAGTGATCGAAGACGTGGCTGGGGACATTGACGTTGGTCCCAATGTGGGTGGGCTTCATCTCAAAGTTGTTAGCAATGGAGCTGTTCTTCATGCTGTTGGGGAGCCACAGGAATTGGCGGACGCCGTCGACGGAGTCAAACGCCGGCATTTCGAGGCTGTAGCGGTGGCTGCTGATGTCGAAGATTCGTCCCGTTTCTGTAGACTTCGCGACAAGGGGGCTTCAGGGCGGCGTCGGTGGCGCCGGCAGAGACTTAGACGGGCGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003008 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006081 GO:0006082 GO:0007588 GO:0008150 GO:0008152 GO:0008465 GO:0009987 GO:0016043 GO:0016491 GO:0016614 GO:0016616 GO:0016618 GO:0019752 GO:0022607 GO:0030267 GO:0031406 GO:0032501 GO:0032787 GO:0036094 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043177 GO:0043436 GO:0043648 GO:0043933 GO:0044085 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046487 GO:0046983 GO:0048037 GO:0050661 GO:0050662 GO:0051259 GO:0051287 GO:0055114 GO:0065003 GO:0070402 GO:0071704 GO:0071840 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2-Hacid_dh 2-Hacid_dh_C

Protein Analysis

135

Amino Acids

15.08

Weight (kDa)

6.08

Isoelectric Point (pI)

63.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72190
fragaria_vesca	FvH4_5g31330 FvH4_5g31330 FvH4_5g31330 FvH4_5g31330 FvH4_5g31330 FvH4_5g31330 FvH4_5g31330
malus_domestica	MD08G1217300.v1.1
prunus_persica	Prupe.1G556800_v2.0.a1 Prupe.1G556800_v2.0.a1 Prupe.1G556800_v2.0.a1 Prupe.1G556800_v2.0.a1 Prupe.1G556800_v2.0.a1 Prupe.1G556800_v2.0.a1
pyrus_communis	pycom08g18800
rosa_chinensis	RchiOBHm_Chr7g0226521 RchiOBHm_Chr7g0226551
rosa_laevigata	RLG00000001716 RLG00000001719
rosa_multiflora	Rmu_sc0001423.1_g000008
rosa_roxburghii	Rroxscaffold_3G00232710
rosa_rugosa	Rorug07G0237900 Rorug07G0237900 Rorug07G0238000 Rorug07G0238200
rosa_samantha	Rh7BG372200 Rh7BG372500 Rh7DG384300 Rh7DG384500
rosa_wichuraiana	Rw7G032370 Rw7G032390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	378
AccI	GTMKAC	2 cut(s)	267, 340
AccII	CGCG	1 cut(s)	348
AciI	CCGC	4 cut(s)	129, 257, 302, 367
AcsI	RAATTY	1 cut(s)	98
AcuI	CTGAAG	1 cut(s)	345
AcyI	GRCGYC	3 cut(s)	261, 370, 379
AfiI	CCNNNNNNNGG	1 cut(s)	185
AgsI	TTSAA	2 cut(s)	53, 125
AjiI	CACGTC	1 cut(s)	154
AluBI	AGCT	2 cut(s)	56, 221
AluI	AGCT	2 cut(s)	56, 221
Alw26I	GTCTC	1 cut(s)	382
ApeKI	GCWGC	2 cut(s)	39, 308
ApoI	RAATTY	1 cut(s)	98
AspLEI	GCGC	1 cut(s)	381
AspS9I	GGNCC	2 cut(s)	109, 176
AvaII	GGWCC	2 cut(s)	109, 176
BanI	GGYRCC	1 cut(s)	378
BbsI	GAAGAC	1 cut(s)	156
BbvI	GCAGC	2 cut(s)	26, 295
BccI	CCATC	1 cut(s)	140
BceAI	ACGGC	1 cut(s)	248
BcoDI	GTCTC	1 cut(s)	382
BfmI	CTRYAG	2 cut(s)	297, 337
BfoI	RGCGCY	1 cut(s)	382
BisI	GCNGC	4 cut(s)	40, 129, 309, 368
BlsI	GCNGC	4 cut(s)	41, 130, 310, 369
Bme18I	GGWCC	2 cut(s)	109, 176
BmgBI	CACGTC	1 cut(s)	154
BmgT120I	GGNCC	2 cut(s)	109, 176
BmiI	GGNNCC	3 cut(s)	178, 243, 380
BoxI	GACNNNNGTC	1 cut(s)	174
BpiI	GAAGAC	1 cut(s)	156
Bsa29I	ATCGAT	1 cut(s)	117
BsaHI	GRCGYC	3 cut(s)	261, 370, 379
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
Bse118I	RCCGGY	2 cut(s)	282, 381
Bse3DI	GCAATG	1 cut(s)	220
BseCI	ATCGAT	1 cut(s)	117
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseMI	GCAATG	1 cut(s)	220
BseXI	GCAGC	2 cut(s)	26, 295
BseYI	CCCAGC	1 cut(s)	158
Bsh1236I	CGCG	1 cut(s)	348
BshNI	GGYRCC	1 cut(s)	378
BshVI	ATCGAT	1 cut(s)	117
BsiSI	CCGG	3 cut(s)	95, 283, 382
BslFI	GGGAC	4 cut(s)	83, 162, 176, 313
BslI	CCNNNNNNNGG	1 cut(s)	185
BsmAI	GTCTC	1 cut(s)	382
BsmFI	GGGAC	4 cut(s)	83, 162, 176, 313
Bsp143I	GATC	2 cut(s)	63, 144
Bsp68I	TCGCGA	1 cut(s)	348
BspACI	CCGC	4 cut(s)	129, 257, 302, 367
BspDI	ATCGAT	1 cut(s)	117
BspFNI	CGCG	1 cut(s)	348
BspLI	GGNNCC	3 cut(s)	178, 243, 380
BspT107I	GGYRCC	1 cut(s)	378
BsrDI	GCAATG	1 cut(s)	220
BsrFI	RCCGGY	2 cut(s)	282, 381
BssAI	RCCGGY	2 cut(s)	282, 381
BssMI	GATC	2 cut(s)	63, 144
BssNI	GRCGYC	3 cut(s)	261, 370, 379
Bst4CI	ACNGT	1 cut(s)	113
BstACI	GRCGYC	3 cut(s)	261, 370, 379
BstC8I	GCNNGC	2 cut(s)	284, 383
BstDEI	CTNAG	1 cut(s)	392
BstFNI	CGCG	1 cut(s)	348
BstH2I	RGCGCY	1 cut(s)	382
BstHHI	GCGC	1 cut(s)	381
BstKTI	GATC	2 cut(s)	66, 147
BstMAI	GTCTC	1 cut(s)	382
BstMBI	GATC	2 cut(s)	63, 144
BstMWI	GCNNNNNNNGC	2 cut(s)	308, 376
BstPAI	GACNNNNGTC	1 cut(s)	174
BstSFI	CTRYAG	2 cut(s)	297, 337
BstUI	CGCG	1 cut(s)	348
BstV1I	GCAGC	2 cut(s)	26, 295
BstV2I	GAAGAC	1 cut(s)	156
Bsu15I	ATCGAT	1 cut(s)	117
BsuTUI	ATCGAT	1 cut(s)	117
BtrI	CACGTC	1 cut(s)	154
BtuMI	TCGCGA	1 cut(s)	348
Cac8I	GCNNGC	2 cut(s)	284, 383
CfoI	GCGC	1 cut(s)	381
Cfr10I	RCCGGY	2 cut(s)	282, 381
Cfr13I	GGNCC	2 cut(s)	109, 176
ClaI	ATCGAT	1 cut(s)	117
CseI	GACGC	2 cut(s)	269, 359
CspCI	CAANNNNNGTGG	4 cut(s)	169, 204, 234, 269
CviAII	CATG	2 cut(s)	7, 230
CviJI	RGCY	9 cut(s)	56, 128, 158, 193, 221, 244, 296, 308, 359
CviKI_1	RGCY	9 cut(s)	56, 128, 158, 193, 221, 244, 296, 308, 359
DdeI	CTNAG	1 cut(s)	392
DinI	GGCGCC	1 cut(s)	380
DpnI	GATC	2 cut(s)	65, 146
DpnII	GATC	2 cut(s)	63, 144
EciI	GGCGGA	1 cut(s)	272
Eco47I	GGWCC	2 cut(s)	109, 176
Eco57I	CTGAAG	1 cut(s)	345
EgeI	GGCGCC	1 cut(s)	380
EheI	GGCGCC	1 cut(s)	380
FaeI	CATG	2 cut(s)	10, 233
FaiI	YATR	3 cut(s)	8, 29, 231
FaqI	GGGAC	4 cut(s)	83, 162, 176, 313
FatI	CATG	2 cut(s)	6, 229
FblI	GTMKAC	2 cut(s)	267, 340
Fnu4HI	GCNGC	4 cut(s)	40, 129, 309, 368
Fsp4HI	GCNGC	4 cut(s)	40, 129, 309, 368
GlaI	GCGC	1 cut(s)	380
GluI	GCNGC	4 cut(s)	40, 129, 309, 368
GsaI	CCCAGC	1 cut(s)	162
HaeII	RGCGCY	1 cut(s)	382
HapII	CCGG	3 cut(s)	95, 283, 382
HgaI	GACGC	2 cut(s)	269, 359
HhaI	GCGC	1 cut(s)	381
Hin1I	GRCGYC	3 cut(s)	261, 370, 379
Hin1II	CATG	2 cut(s)	10, 233
Hin6I	GCGC	1 cut(s)	379
HinP1I	GCGC	1 cut(s)	379
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HindIII	AAGCTT	1 cut(s)	54
HinfI	GANTC	3 cut(s)	24, 273, 323
HpaII	CCGG	3 cut(s)	95, 283, 382
Hpy166II	GTNNAC	2 cut(s)	268, 341
Hpy188I	TCNGA	1 cut(s)	86
Hpy188III	TCNNGA	1 cut(s)	347
Hpy8I	GTNNAC	2 cut(s)	268, 341
Hpy99I	CGWCG	4 cut(s)	86, 269, 272, 375
HpyAV	CCTTC	1 cut(s)	59
HpyCH4III	ACNGT	1 cut(s)	113
HpyCH4IV	ACGT	2 cut(s)	153, 171
HpyF10VI	GCNNNNNNNGC	2 cut(s)	308, 376
HpyF3I	CTNAG	1 cut(s)	392
HpySE526I	ACGT	2 cut(s)	153, 171
Hsp92I	GRCGYC	3 cut(s)	261, 370, 379
Hsp92II	CATG	2 cut(s)	10, 233
HspAI	GCGC	1 cut(s)	379
KasI	GGCGCC	1 cut(s)	378
KroI	GCCGGC	2 cut(s)	282, 381
KroNI	GCCGGC	2 cut(s)	284, 383
Kzo9I	GATC	2 cut(s)	63, 144
LmnI	GCTCC	2 cut(s)	218, 241
LpnPI	CCDG	7 cut(s)	52, 108, 144, 233, 296, 348, 395
Lsp1109I	GCAGC	2 cut(s)	26, 295
MaeII	ACGT	2 cut(s)	153, 171
MalI	GATC	2 cut(s)	65, 146
MboI	GATC	2 cut(s)	63, 144
MboII	GAAGA	3 cut(s)	161, 218, 332
MluCI	AATT	3 cut(s)	89, 98, 251
Mly113I	GGCGCC	1 cut(s)	379
MlyI	GAGTC	2 cut(s)	18, 282
MmeI	TCCRAC	1 cut(s)	64
MnlI	CCTC	1 cut(s)	286
MroNI	GCCGGC	2 cut(s)	282, 381
MseI	TTAA	1 cut(s)	18
MspI	CCGG	3 cut(s)	95, 283, 382
MvnI	CGCG	1 cut(s)	348
MwoI	GCNNNNNNNGC	2 cut(s)	308, 376
NaeI	GCCGGC	2 cut(s)	284, 383
NarI	GGCGCC	1 cut(s)	379
NdeII	GATC	2 cut(s)	63, 144
NgoMIV	GCCGGC	2 cut(s)	282, 381
NlaIII	CATG	2 cut(s)	10, 233
NlaIV	GGNNCC	3 cut(s)	178, 243, 380
NruI	TCGCGA	1 cut(s)	348
PdiI	GCCGGC	2 cut(s)	284, 383
PfeI	GAWTC	1 cut(s)	323
PflFI	GACNNNGTC	2 cut(s)	263, 272
PkrI	GCNGC	4 cut(s)	41, 130, 310, 369
PleI	GAGTC	2 cut(s)	18, 281
PluTI	GGCGCC	1 cut(s)	382
PpsI	GAGTC	2 cut(s)	18, 281
PshAI	GACNNNNGTC	1 cut(s)	174
PspFI	CCCAGC	1 cut(s)	158
PspN4I	GGNNCC	3 cut(s)	178, 243, 380
PspPI	GGNCC	2 cut(s)	109, 176
PsyI	GACNNNGTC	2 cut(s)	263, 272
RruI	TCGCGA	1 cut(s)	348
SalI	GTCGAC	1 cut(s)	266
SaqAI	TTAA	1 cut(s)	18
SatI	GCNGC	4 cut(s)	40, 129, 309, 368
Sau3AI	GATC	2 cut(s)	63, 144
Sau96I	GGNCC	2 cut(s)	109, 176
SchI	GAGTC	2 cut(s)	18, 282
SetI	ASST	5 cut(s)	51, 58, 156, 174, 223
SfcI	CTRYAG	2 cut(s)	297, 337
SfoI	GGCGCC	1 cut(s)	380
SgrDI	CGTCGACG	1 cut(s)	266
SinI	GGWCC	2 cut(s)	109, 176
Sse9I	AATT	3 cut(s)	89, 98, 251
SsiI	CCGC	4 cut(s)	129, 257, 302, 367
SspDI	GGCGCC	1 cut(s)	378
TaaI	ACNGT	1 cut(s)	113
TaiI	ACGT	2 cut(s)	156, 174
TaqI	TCGA	6 cut(s)	117, 135, 147, 267, 291, 318
TasI	AATT	3 cut(s)	89, 98, 251
TauI	GCSGC	2 cut(s)	131, 370
TfiI	GAWTC	1 cut(s)	323
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TseI	GCWGC	2 cut(s)	39, 308
TspDTI	ATGAA	3 cut(s)	93, 185, 218
TspGWI	ACGGA	1 cut(s)	285
Tth111I	GACNNNGTC	2 cut(s)	263, 272
VpaK11BI	GGWCC	2 cut(s)	109, 176
XapI	RAATTY	1 cut(s)	98
XmiI	GTMKAC	2 cut(s)	267, 340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.