Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004500

Physical Location & Seq

Genomic Coordinates Forward (+)

45452013 .. 45464076

Gene Structure 12064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G556800.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGAAAAGAAACACTTGGCCCAAGGTCGCGCAGAGAAGAAAGAGGACACGAAATGTAGCATCAAAGAAGTTGCAGGCTGCCAAGAATGGCGAGAAGCTAGAAGATGAAGCACTTATTCCTTCTTTAAACGCAGTGACTCTTTTGTTGTGCGAGTCCGTGAAGCAGGAGCAGGCAACCACGTCATCGAGCCTGCCCCTTCTCAATTTAATGGTTTTGAGATCGAGGCTCTTGGCAAAGGCCATTAGTCGAACCAGCACATATCATCGTCTAATGTCCTGCAGTGCAAATATCTTGGGGAAGGTTGAGAGAATGGTTGACAACGATGAGAAGAAAATTACCCGTGTTCTGTTTTGTGGGCCACATTTTCCTGCTTCTCATACCTACACAAGAGAATATTTGAAGGAGTACCCCTTTGTCCAGGTAGATGATGTTCCCCTTGATGACGTGCCTGGTGTTATCCAAAATTATAATATCTGTATAGTGAAAACCATGAAGTTCGATTCAATTCTTCTCTCTCATGCAGAAAAGATGAAGCTTATAATGCAGTATGGTGTTGGCCTGGAAGGGGTTGACATTGATTCTGCAACTGAGTTTGGAATCAAAGTCGCTAGGATTCCGAGTCATGTAACTGGAAACGCAGCATCATGTGCAGAAATGGCGATTTATCTGATGCTGGGCCTTTTACGAAAGCAAGTCTTCATTTTAGGTTTTGGAAATATTGGAATTGACCTGGCAAAGCGCTTGAGACCGTTTGGTGTGAAAATTATTGCCACGAAACGGAGTTGGGCCACACATTCACTAGTTTCTTGTCTATCAAATGTTCAAAATGGTCCCGTCAATGATTTTGTTGATGAGAAGGGCGGCCATGAAGATATCCACAAGTTTGCAAGCAAAGCGGACATTGTTGTTTGTTGCTTGTGTTTAAACAGTGACACTGTTGGCGTCGTAAACAAGCCATTTATATCTTCTATGAGAAAGGGTTCCCTTTTGGTAAATATTGCCCGAGGGGGTCTCCTGGACTATGAAGCTGTTTCGTATTACTTAGAGTCTGGCCACTTAGGTGGTTTAGGGATTGATGTTGCTTGGACAGAGCCTTTTGATCCTGATGATCCAATTTTGAAGTTCAGCAATGTTCTCATCACACCTCATGTGGCAGGAGTTACTGAGTATTCTTACAGATCCATGTCCAAGGTCGTTGGTGATGTCGCCATTCAACTCCATGAAGGGAGGCCCTTGACTGGAATTGAGTTTGTCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003008 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006081 GO:0006082 GO:0007588 GO:0008150 GO:0008152 GO:0008465 GO:0009987 GO:0016043 GO:0016491 GO:0016614 GO:0016616 GO:0016618 GO:0019752 GO:0022607 GO:0030267 GO:0031406 GO:0032501 GO:0032787 GO:0036094 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043177 GO:0043436 GO:0043648 GO:0043933 GO:0044085 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046487 GO:0046983 GO:0048037 GO:0050661 GO:0050662 GO:0051259 GO:0051287 GO:0055114 GO:0065003 GO:0070402 GO:0071704 GO:0071840 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2-Hacid_dh 2-Hacid_dh_C

Protein Analysis

420

Amino Acids

46.28

Weight (kDa)

8.81

Isoelectric Point (pI)

39.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72190
fragaria_vesca	FvH4_5g31330 FvH4_5g31330 FvH4_5g31330 FvH4_5g31330 FvH4_5g31330 FvH4_5g31330 FvH4_5g31330
malus_domestica	MD08G1217300.v1.1
prunus_persica	Prupe.1G556800_v2.0.a1 Prupe.1G556800_v2.0.a1 Prupe.1G556800_v2.0.a1 Prupe.1G556800_v2.0.a1 Prupe.1G556800_v2.0.a1 Prupe.1G556800_v2.0.a1
pyrus_communis	pycom08g18800
rosa_chinensis	RchiOBHm_Chr7g0226521 RchiOBHm_Chr7g0226551
rosa_laevigata	RLG00000001716 RLG00000001719
rosa_multiflora	Rmu_sc0001423.1_g000008
rosa_roxburghii	Rroxscaffold_3G00232710
rosa_rugosa	Rorug07G0237900 Rorug07G0237900 Rorug07G0238000 Rorug07G0238200
rosa_samantha	Rh7BG372200 Rh7BG372500 Rh7DG384300 Rh7DG384500
rosa_wichuraiana	Rw7G032370 Rw7G032390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	468, 539
AccII	CGCG	1 cut(s)	29
AciI	CCGC	2 cut(s)	861, 896
AclWI	GGATC	3 cut(s)	1094, 1103, 1173
AcoI	YGGCCR	2 cut(s)	862, 1051
AcyI	GRCGYC	1 cut(s)	942
AfaI	GTAC	1 cut(s)	407
AfeI	AGCGCT	1 cut(s)	740
AfiI	CCNNNNNNNGG	3 cut(s)	565, 777, 1238
AgsI	TTSAA	5 cut(s)	400, 504, 824, 1120, 1214
AhlI	ACTAGT	1 cut(s)	799
AjiI	CACGTC	2 cut(s)	180, 445
AjnI	CCWGG	5 cut(s)	417, 448, 558, 729, 1014
AleI	CACNNNNGTG	1 cut(s)	1059
AluBI	AGCT	3 cut(s)	97, 535, 1028
AluI	AGCT	3 cut(s)	97, 535, 1028
Alw26I	GTCTC	2 cut(s)	739, 1016
AlwI	GGATC	3 cut(s)	1094, 1103, 1173
Ama87I	CYCGRG	1 cut(s)	1002
Aor51HI	AGCGCT	1 cut(s)	740
AoxI	GGCC	9 cut(s)	17, 237, 356, 556, 676, 786, 862, 1051, 1229
ApeKI	GCWGC	2 cut(s)	77, 638
Asp700I	GAANNNNTTC	1 cut(s)	979
AspLEI	GCGC	2 cut(s)	31, 741
AspS9I	GGNCC	6 cut(s)	18, 356, 676, 786, 830, 1230
AsuHPI	GGTGA	1 cut(s)	1211
AvaI	CYCGRG	1 cut(s)	1002
AvaII	GGWCC	1 cut(s)	830
BalI	TGGCCA	1 cut(s)	1053
BbsI	GAAGAC	1 cut(s)	688
BbvI	GCAGC	2 cut(s)	64, 650
BciT130I	CCWGG	5 cut(s)	419, 450, 560, 731, 1016
BcoDI	GTCTC	2 cut(s)	739, 1016
BcuI	ACTAGT	1 cut(s)	799
BfaI	CTAG	3 cut(s)	98, 609, 800
BfmI	CTRYAG	1 cut(s)	277
BfoI	RGCGCY	1 cut(s)	742
BisI	GCNGC	3 cut(s)	78, 639, 862
BlsI	GCNGC	3 cut(s)	79, 640, 863
Bme1390I	CCNGG	5 cut(s)	419, 450, 560, 731, 1016
Bme18I	GGWCC	1 cut(s)	830
BmeT110I	CYCGRG	1 cut(s)	1002
BmgBI	CACGTC	2 cut(s)	180, 445
BmgT120I	GGNCC	6 cut(s)	18, 356, 676, 786, 830, 1230
BmiI	GGNNCC	2 cut(s)	832, 982
BmrFI	CCNGG	5 cut(s)	419, 450, 560, 731, 1016
BmsI	GCATC	3 cut(s)	68, 650, 660
BpiI	GAAGAC	1 cut(s)	688
BplI	GAGNNNNNCTC	2 cut(s)	996, 1028
BpuEI	CTTGAG	1 cut(s)	763
BsaHI	GRCGYC	1 cut(s)	942
BsaI	GGTCTC	2 cut(s)	739, 1016
BsaJI	CCNNGG	3 cut(s)	21, 1003, 1188
Bsc4I	CCNNNNNNNGG	3 cut(s)	565, 777, 1238
Bse1I	ACTGG	2 cut(s)	634, 1243
Bse3DI	GCAATG	1 cut(s)	1135
BseBI	CCWGG	5 cut(s)	419, 450, 560, 731, 1016
BseDI	CCNNGG	3 cut(s)	21, 1003, 1188
BseLI	CCNNNNNNNGG	3 cut(s)	565, 777, 1238
BseMI	GCAATG	1 cut(s)	1135
BseMII	CTCAG	2 cut(s)	579, 1155
BseNI	ACTGG	2 cut(s)	634, 1243
BseXI	GCAGC	2 cut(s)	64, 650
BseYI	CCCAGC	1 cut(s)	673
BsgI	GTGCAG	1 cut(s)	669
Bsh1236I	CGCG	1 cut(s)	29
BshFI	GGCC	9 cut(s)	19, 239, 358, 558, 678, 788, 864, 1053, 1231
BsiHKCI	CYCGRG	1 cut(s)	1002
BslFI	GGGAC	1 cut(s)	816
BslI	CCNNNNNNNGG	3 cut(s)	565, 777, 1238
BsmAI	GTCTC	2 cut(s)	739, 1016
BsmFI	GGGAC	1 cut(s)	816
BsnI	GGCC	9 cut(s)	19, 239, 358, 558, 678, 788, 864, 1053, 1231
Bso31I	GGTCTC	2 cut(s)	739, 1016
BsoBI	CYCGRG	1 cut(s)	1002
Bsp143I	GATC	4 cut(s)	218, 1099, 1108, 1178
BspACI	CCGC	2 cut(s)	861, 896
BspANI	GGCC	9 cut(s)	19, 239, 358, 558, 678, 788, 864, 1053, 1231
BspCNI	CTCAG	2 cut(s)	580, 1156
BspFNI	CGCG	1 cut(s)	29
BspLI	GGNNCC	2 cut(s)	832, 982
BspMAI	CTGCAG	1 cut(s)	281
BspPI	GGATC	3 cut(s)	1094, 1103, 1173
BspTNI	GGTCTC	2 cut(s)	739, 1016
BsrDI	GCAATG	1 cut(s)	1135
BsrI	ACTGG	2 cut(s)	634, 1243
BssECI	CCNNGG	3 cut(s)	21, 1003, 1188
BssMI	GATC	4 cut(s)	218, 1099, 1108, 1178
BssNI	GRCGYC	1 cut(s)	942
BssT1I	CCWWGG	2 cut(s)	21, 1188
Bst2UI	CCWGG	5 cut(s)	419, 450, 560, 731, 1016
Bst4CI	ACNGT	3 cut(s)	750, 929, 937
BstACI	GRCGYC	1 cut(s)	942
BstAPI	GCANNNNNTGC	1 cut(s)	647
BstC8I	GCNNGC	4 cut(s)	75, 171, 191, 889
BstDEI	CTNAG	4 cut(s)	588, 1042, 1057, 1164
BstFNI	CGCG	1 cut(s)	29
BstH2I	RGCGCY	1 cut(s)	742
BstHHI	GCGC	2 cut(s)	31, 741
BstKTI	GATC	4 cut(s)	221, 1102, 1111, 1181
BstMAI	GTCTC	2 cut(s)	739, 1016
BstMBI	GATC	4 cut(s)	218, 1099, 1108, 1178
BstMWI	GCNNNNNNNGC	4 cut(s)	541, 647, 656, 893
BstNI	CCWGG	5 cut(s)	419, 450, 560, 731, 1016
BstSCI	CCNGG	5 cut(s)	417, 448, 558, 729, 1014
BstSFI	CTRYAG	1 cut(s)	277
BstUI	CGCG	1 cut(s)	29
BstV1I	GCAGC	2 cut(s)	64, 650
BstV2I	GAAGAC	1 cut(s)	688
BstX2I	RGATCY	1 cut(s)	1178
BstXI	CCANNNNNNTGG	1 cut(s)	1061
BstYI	RGATCY	1 cut(s)	1178
BsuRI	GGCC	9 cut(s)	19, 239, 358, 558, 678, 788, 864, 1053, 1231
BtrI	CACGTC	2 cut(s)	180, 445
BtsI	GCAGTG	2 cut(s)	138, 286
BtsIMutI	CAGTG	4 cut(s)	138, 286, 933, 934
Cac8I	GCNNGC	4 cut(s)	75, 171, 191, 889
CfoI	GCGC	2 cut(s)	31, 741
Cfr13I	GGNCC	6 cut(s)	18, 356, 676, 786, 830, 1230
CseI	GACGC	1 cut(s)	931
Csp6I	GTAC	1 cut(s)	406
CviAII	CATG	8 cut(s)	490, 518, 623, 645, 866, 1148, 1183, 1220
CviQI	GTAC	1 cut(s)	406
DdeI	CTNAG	4 cut(s)	588, 1042, 1057, 1164
DpnI	GATC	4 cut(s)	220, 1101, 1110, 1180
DpnII	GATC	4 cut(s)	218, 1099, 1108, 1178
DraI	TTTAAA	2 cut(s)	126, 924
EaeI	YGGCCR	2 cut(s)	862, 1051
Eco130I	CCWWGG	2 cut(s)	21, 1188
Eco31I	GGTCTC	2 cut(s)	739, 1016
Eco32I	GATATC	1 cut(s)	874
Eco47I	GGWCC	1 cut(s)	830
Eco47III	AGCGCT	1 cut(s)	740
Eco88I	CYCGRG	1 cut(s)	1002
EcoO109I	RGGNCCY	1 cut(s)	1230
EcoRII	CCWGG	5 cut(s)	417, 448, 558, 729, 1014
EcoRV	GATATC	1 cut(s)	874
EcoT14I	CCWWGG	2 cut(s)	21, 1188
ErhI	CCWWGG	2 cut(s)	21, 1188
FaeI	CATG	8 cut(s)	493, 521, 626, 648, 869, 1151, 1186, 1223
FalI	AAGNNNNNCTT	3 cut(s)	30, 680, 712
FaqI	GGGAC	1 cut(s)	816
FatI	CATG	8 cut(s)	489, 517, 622, 644, 865, 1147, 1182, 1219
Fnu4HI	GCNGC	3 cut(s)	78, 639, 862
Fsp4HI	GCNGC	3 cut(s)	78, 639, 862
FspBI	CTAG	3 cut(s)	98, 609, 800
GlaI	GCGC	2 cut(s)	30, 740
GluI	GCNGC	3 cut(s)	78, 639, 862
GsaI	CCCAGC	1 cut(s)	677
HaeII	RGCGCY	1 cut(s)	742
HaeIII	GGCC	9 cut(s)	19, 239, 358, 558, 678, 788, 864, 1053, 1231
HgaI	GACGC	1 cut(s)	931
HhaI	GCGC	2 cut(s)	31, 741
Hin1I	GRCGYC	1 cut(s)	942
Hin1II	CATG	8 cut(s)	493, 521, 626, 648, 869, 1151, 1186, 1223
Hin6I	GCGC	2 cut(s)	29, 739
HinP1I	GCGC	2 cut(s)	29, 739
HincII	GTYRAC	3 cut(s)	316, 571, 1255
HindII	GTYRAC	3 cut(s)	316, 571, 1255
HindIII	AAGCTT	1 cut(s)	533
HinfI	GANTC	8 cut(s)	136, 152, 500, 578, 597, 613, 619, 1046
HphI	GGTGA	1 cut(s)	1211
Hpy166II	GTNNAC	4 cut(s)	316, 571, 949, 1255
Hpy188I	TCNGA	2 cut(s)	618, 669
Hpy188III	TCNNGA	1 cut(s)	1103
Hpy8I	GTNNAC	4 cut(s)	316, 571, 949, 1255
Hpy99I	CGWCG	1 cut(s)	947
HpyAV	CCTTC	7 cut(s)	129, 206, 292, 394, 557, 850, 1217
HpyCH4III	ACNGT	3 cut(s)	750, 929, 937
HpyCH4IV	ACGT	2 cut(s)	179, 444
HpyCH4V	TGCA	8 cut(s)	73, 279, 284, 521, 544, 584, 650, 887
HpyF10VI	GCNNNNNNNGC	4 cut(s)	541, 647, 656, 893
HpyF3I	CTNAG	4 cut(s)	588, 1042, 1057, 1164
HpySE526I	ACGT	2 cut(s)	179, 444
Hsp92I	GRCGYC	1 cut(s)	942
Hsp92II	CATG	8 cut(s)	493, 521, 626, 648, 869, 1151, 1186, 1223
HspAI	GCGC	2 cut(s)	29, 739
Kzo9I	GATC	4 cut(s)	218, 1099, 1108, 1178
LmnI	GCTCC	1 cut(s)	166
Lsp1109I	GCAGC	2 cut(s)	64, 650
LweI	GCATC	3 cut(s)	68, 650, 660
MaeI	CTAG	3 cut(s)	98, 609, 800
MaeII	ACGT	2 cut(s)	179, 444
MaeIII	GTNAC	4 cut(s)	133, 625, 929, 1159
MalI	GATC	4 cut(s)	220, 1101, 1110, 1180
MboI	GATC	4 cut(s)	218, 1099, 1108, 1178
MboII	GAAGA	7 cut(s)	48, 113, 340, 500, 688, 881, 957
MflI	RGATCY	1 cut(s)	1178
MlsI	TGGCCA	1 cut(s)	1053
MluCI	AATT	8 cut(s)	202, 333, 463, 504, 723, 762, 1113, 1242
MluNI	TGGCCA	1 cut(s)	1053
MlyI	GAGTC	4 cut(s)	130, 161, 628, 1055
MnlI	CCTC	5 cut(s)	36, 216, 998, 1155, 1221
Mox20I	TGGCCA	1 cut(s)	1053
MroXI	GAANNNNTTC	1 cut(s)	979
MscI	TGGCCA	1 cut(s)	1053
MseI	TTAA	3 cut(s)	125, 206, 923
MslI	CAYNNNNRTG	1 cut(s)	1059
Msp20I	TGGCCA	1 cut(s)	1053
MspR9I	CCNGG	5 cut(s)	419, 450, 560, 731, 1016
MssI	GTTTAAAC	1 cut(s)	924
MvaI	CCWGG	5 cut(s)	419, 450, 560, 731, 1016
MvnI	CGCG	1 cut(s)	29
MwoI	GCNNNNNNNGC	4 cut(s)	541, 647, 656, 893
NdeII	GATC	4 cut(s)	218, 1099, 1108, 1178
NlaIII	CATG	8 cut(s)	493, 521, 626, 648, 869, 1151, 1186, 1223
NlaIV	GGNNCC	2 cut(s)	832, 982
NmuCI	GTSAC	2 cut(s)	133, 929
OliI	CACNNNNGTG	1 cut(s)	1059
PdmI	GAANNNNTTC	1 cut(s)	979
PfeI	GAWTC	4 cut(s)	500, 578, 597, 613
PfoI	TCCNGGA	1 cut(s)	1014
PkrI	GCNGC	3 cut(s)	79, 640, 863
PleI	GAGTC	4 cut(s)	130, 160, 627, 1054
PmeI	GTTTAAAC	1 cut(s)	924
PpsI	GAGTC	4 cut(s)	130, 160, 627, 1054
PsiI	TTATAA	2 cut(s)	468, 539
Psp6I	CCWGG	5 cut(s)	417, 448, 558, 729, 1014
PspFI	CCCAGC	1 cut(s)	673
PspGI	CCWGG	5 cut(s)	417, 448, 558, 729, 1014
PspN4I	GGNNCC	2 cut(s)	832, 982
PspPI	GGNCC	6 cut(s)	18, 356, 676, 786, 830, 1230
PsrI	GAACNNNNNNTAC	2 cut(s)	414, 446
PstI	CTGCAG	1 cut(s)	281
PsuI	RGATCY	1 cut(s)	1178
RsaI	GTAC	1 cut(s)	407
RsaNI	GTAC	1 cut(s)	406
RseI	CAYNNNNRTG	1 cut(s)	1059
SaqAI	TTAA	3 cut(s)	125, 206, 923
SatI	GCNGC	3 cut(s)	78, 639, 862
Sau3AI	GATC	4 cut(s)	218, 1099, 1108, 1178
Sau96I	GGNCC	6 cut(s)	18, 356, 676, 786, 830, 1230
SchI	GAGTC	4 cut(s)	130, 161, 628, 1055
ScrFI	CCNGG	5 cut(s)	419, 450, 560, 731, 1016
SfaNI	GCATC	3 cut(s)	68, 650, 660
SfcI	CTRYAG	1 cut(s)	277
SinI	GGWCC	1 cut(s)	830
SmiMI	CAYNNNNRTG	1 cut(s)	1059
SmlI	CTYRAG	1 cut(s)	742
SmoI	CTYRAG	1 cut(s)	742
SpeI	ACTAGT	1 cut(s)	799
Sse9I	AATT	8 cut(s)	202, 333, 463, 504, 723, 762, 1113, 1242
SsiI	CCGC	2 cut(s)	861, 896
SspI	AATATT	3 cut(s)	395, 718, 997
SspMI	CTAG	3 cut(s)	98, 609, 800
StyD4I	CCNGG	5 cut(s)	417, 448, 558, 729, 1014
StyI	CCWWGG	2 cut(s)	21, 1188
TaaI	ACNGT	3 cut(s)	750, 929, 937
TaiI	ACGT	2 cut(s)	182, 447
TaqI	TCGA	4 cut(s)	185, 221, 247, 498
TasI	AATT	8 cut(s)	202, 333, 463, 504, 723, 762, 1113, 1242
TauI	GCSGC	1 cut(s)	864
TfiI	GAWTC	4 cut(s)	500, 578, 597, 613
Tru1I	TTAA	3 cut(s)	125, 206, 923
Tru9I	TTAA	3 cut(s)	125, 206, 923
TscAI	CASTG	4 cut(s)	138, 286, 934, 940
TseFI	GTSAC	2 cut(s)	133, 929
TseI	GCWGC	2 cut(s)	77, 638
Tsp45I	GTSAC	2 cut(s)	133, 929
TspDTI	ATGAA	8 cut(s)	17, 120, 506, 545, 688, 882, 1038, 1236
TspGWI	ACGGA	2 cut(s)	145, 793
TspRI	CASTG	4 cut(s)	138, 286, 934, 940
VpaK11BI	GGWCC	1 cut(s)	830
XmnI	GAANNNNTTC	1 cut(s)	979
XspI	CTAG	3 cut(s)	98, 609, 800

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.