Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001423.1

Orthogroup ID

OG0004500

Physical Location & Seq

Genomic Coordinates Reverse (-)

28732 .. 33188

Gene Structure 4457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001423.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

atgatgttgggaggttgtgctgtgatgactcttttgggtgctgtagatggaacaaataggaggatcttcgagggagctggggttgatgatgtaccacttgctgatgtgcctgatgttatcgagaagaatgatatctgtatagtgaaaagcatgaagttagattttaatgtcctctctcgtgcaaaaaagatgaagcttataatgcagtatggtgttggactggaaggcgttgaaattgatgctgcgactaagtttggaattaaagtcgctaggattccgagtcatgcaactggaaatgcagcctcatgtgcagaaatggccatttatctcatgttgggccttctccgaaagcaaaatgagatgcaaatttctataaagcagagaaagcttggagacccaattggtgaaacactacttggaaaaacagtgttcattttaggatatggaaatattggaatggagttggcaaagcgcttgaaaccatttggtgtgaaaattattgccacaaaacggaattgggacactcattcagaagattcgtgccaatcaaatgcgttaggtgacttggttgacgagaagggtggtcatgaagatatccattcatttgcaagcaatgcggacattgttgtttgttgtttgtgtttaaatagtgaaacagttggcattgtaaacaagtcatttatagcatcgatgagaaagggtgcccttttggtaaatattgcccgagggggtctcctgaactatgaagctgttctttattacctcgagtccggacacttaggtggcttgggcattgatgttgcttggactgagccatttgatcctgatgatcccattttgaagttcaataatgttctgatcacacctcatgttgcaggagttacagagtattcttacagatccatgtcaaaaatagttggtgatactgccattcaacttcatgaagggaagcctttgacaggactggagtttgtcaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003008 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006081 GO:0006082 GO:0007588 GO:0008150 GO:0008152 GO:0008465 GO:0009987 GO:0016043 GO:0016491 GO:0016614 GO:0016616 GO:0016618 GO:0019752 GO:0022607 GO:0030267 GO:0031406 GO:0032501 GO:0032787 GO:0036094 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043177 GO:0043436 GO:0043648 GO:0043933 GO:0044085 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046487 GO:0046983 GO:0048037 GO:0050661 GO:0050662 GO:0051259 GO:0051287 GO:0055114 GO:0065003 GO:0070402 GO:0071704 GO:0071840 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2-Hacid_dh 2-Hacid_dh_C

Protein Analysis

326

Amino Acids

35.25

Weight (kDa)

5.84

Isoelectric Point (pI)

25.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72190
fragaria_vesca	FvH4_5g31330 FvH4_5g31330 FvH4_5g31330 FvH4_5g31330 FvH4_5g31330 FvH4_5g31330 FvH4_5g31330
malus_domestica	MD08G1217300.v1.1
prunus_persica	Prupe.1G556800_v2.0.a1 Prupe.1G556800_v2.0.a1 Prupe.1G556800_v2.0.a1 Prupe.1G556800_v2.0.a1 Prupe.1G556800_v2.0.a1 Prupe.1G556800_v2.0.a1
pyrus_communis	pycom08g18800
rosa_chinensis	RchiOBHm_Chr7g0226521 RchiOBHm_Chr7g0226551
rosa_laevigata	RLG00000001716 RLG00000001719
rosa_multiflora	Rmu_sc0001423.1_g000008
rosa_roxburghii	Rroxscaffold_3G00232710
rosa_rugosa	Rorug07G0237900 Rorug07G0237900 Rorug07G0238000 Rorug07G0238200
rosa_samantha	Rh7BG372200 Rh7BG372500 Rh7DG384300 Rh7DG384500
rosa_wichuraiana	Rw7G032370 Rw7G032390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	200
AccB1I	GGYRCC	1 cut(s)	701
AccIII	TCCGGA	1 cut(s)	770
AciI	CCGC	1 cut(s)	617
AclWI	GGATC	4 cut(s)	71, 815, 824, 894
AcoI	YGGCCR	1 cut(s)	318
AcsI	RAATTY	1 cut(s)	366
AfaI	GTAC	1 cut(s)	93
AfeI	AGCGCT	1 cut(s)	473
AfiI	CCNNNNNNNGG	2 cut(s)	510, 959
AgsI	TTSAA	5 cut(s)	233, 478, 841, 847, 935
AjuI	GAANNNNNNNTTGG	2 cut(s)	399, 431
AleI	CACNNNNGTG	1 cut(s)	780
AluBI	AGCT	4 cut(s)	77, 196, 388, 749
AluI	AGCT	4 cut(s)	77, 196, 388, 749
Alw26I	GTCTC	2 cut(s)	387, 737
AlwI	GGATC	4 cut(s)	71, 815, 824, 894
Ama87I	CYCGRG	2 cut(s)	723, 764
Aor13HI	TCCGGA	1 cut(s)	770
Aor51HI	AGCGCT	1 cut(s)	473
AoxI	GGCC	2 cut(s)	318, 337
ApeKI	GCWGC	2 cut(s)	242, 299
ApoI	RAATTY	1 cut(s)	366
Asp700I	GAANNNNTTC	1 cut(s)	750
AspLEI	GCGC	1 cut(s)	474
AspS9I	GGNCC	1 cut(s)	337
AsuHPI	GGTGA	3 cut(s)	416, 572, 932
AvaI	CYCGRG	2 cut(s)	723, 764
BaeGI	GKGCMC	1 cut(s)	706
BalI	TGGCCA	1 cut(s)	320
BanI	GGYRCC	1 cut(s)	701
BauI	CACGAG	1 cut(s)	177
BbvI	GCAGC	2 cut(s)	229, 311
BccI	CCATC	1 cut(s)	41
BclI	TGATCA	1 cut(s)	858
BcoDI	GTCTC	2 cut(s)	387, 737
BfaI	CTAG	1 cut(s)	270
BfmI	CTRYAG	1 cut(s)	42
BfoI	RGCGCY	1 cut(s)	475
BisI	GCNGC	2 cut(s)	243, 300
BlsI	GCNGC	2 cut(s)	244, 301
BmeT110I	CYCGRG	2 cut(s)	723, 764
BmgT120I	GGNCC	1 cut(s)	337
BmiI	GGNNCC	1 cut(s)	703
BmsI	GCATC	3 cut(s)	229, 351, 695
BplI	GAGNNNNNCTC	2 cut(s)	717, 749
Bsa29I	ATCGAT	1 cut(s)	689
BsaI	GGTCTC	2 cut(s)	387, 737
BsaJI	CCNNGG	1 cut(s)	724
BsaWI	WCCGGW	1 cut(s)	770
BsaXI	ACNNNNNCTCC	2 cut(s)	66, 96
Bsc4I	CCNNNNNNNGG	2 cut(s)	510, 959
Bse1I	ACTGG	3 cut(s)	225, 295, 969
Bse3DI	GCAATG	1 cut(s)	619
BseAI	TCCGGA	1 cut(s)	770
BseCI	ATCGAT	1 cut(s)	689
BseDI	CCNNGG	1 cut(s)	724
BseLI	CCNNNNNNNGG	2 cut(s)	510, 959
BseMI	GCAATG	1 cut(s)	619
BseMII	CTCAG	1 cut(s)	801
BseNI	ACTGG	3 cut(s)	225, 295, 969
BseSI	GKGCMC	1 cut(s)	706
BseXI	GCAGC	2 cut(s)	229, 311
BseYI	CCCAGC	1 cut(s)	77
BsgI	GTGCAG	1 cut(s)	330
BshFI	GGCC	2 cut(s)	320, 339
BshNI	GGYRCC	1 cut(s)	701
BshVI	ATCGAT	1 cut(s)	689
BsiHKCI	CYCGRG	2 cut(s)	723, 764
BsiSI	CCGG	1 cut(s)	771
BslFI	GGGAC	1 cut(s)	533
BslI	CCNNNNNNNGG	2 cut(s)	510, 959
BsmAI	GTCTC	2 cut(s)	387, 737
BsmFI	GGGAC	1 cut(s)	533
BsnI	GGCC	2 cut(s)	320, 339
Bso31I	GGTCTC	2 cut(s)	387, 737
BsoBI	CYCGRG	2 cut(s)	723, 764
Bsp1286I	GDGCHC	1 cut(s)	706
Bsp13I	TCCGGA	1 cut(s)	770
Bsp143I	GATC	5 cut(s)	63, 820, 829, 858, 899
BspACI	CCGC	1 cut(s)	617
BspANI	GGCC	2 cut(s)	320, 339
BspCNI	CTCAG	1 cut(s)	802
BspDI	ATCGAT	1 cut(s)	689
BspEI	TCCGGA	1 cut(s)	770
BspHI	TCATGA	2 cut(s)	586, 940
BspLI	GGNNCC	1 cut(s)	703
BspPI	GGATC	4 cut(s)	71, 815, 824, 894
BspT107I	GGYRCC	1 cut(s)	701
BspTNI	GGTCTC	2 cut(s)	387, 737
BsrDI	GCAATG	1 cut(s)	619
BsrI	ACTGG	3 cut(s)	225, 295, 969
BssECI	CCNNGG	1 cut(s)	724
BssMI	GATC	5 cut(s)	63, 820, 829, 858, 899
BssSI	CACGAG	1 cut(s)	177
Bst2BI	CACGAG	1 cut(s)	177
Bst4CI	ACNGT	2 cut(s)	427, 658
BstAPI	GCANNNNNTGC	1 cut(s)	614
BstC8I	GCNNGC	1 cut(s)	610
BstDEI	CTNAG	3 cut(s)	249, 778, 810
BstENI	CCTNNNNNAGG	1 cut(s)	957
BstH2I	RGCGCY	1 cut(s)	475
BstHHI	GCGC	1 cut(s)	474
BstKTI	GATC	5 cut(s)	66, 823, 832, 861, 902
BstMAI	GTCTC	2 cut(s)	387, 737
BstMBI	GATC	5 cut(s)	63, 820, 829, 858, 899
BstMWI	GCNNNNNNNGC	5 cut(s)	202, 308, 317, 385, 614
BstSFI	CTRYAG	1 cut(s)	42
BstSLI	GKGCMC	1 cut(s)	706
BstV1I	GCAGC	2 cut(s)	229, 311
BstX2I	RGATCY	2 cut(s)	63, 899
BstYI	RGATCY	2 cut(s)	63, 899
Bsu15I	ATCGAT	1 cut(s)	689
BsuRI	GGCC	2 cut(s)	320, 339
BsuTUI	ATCGAT	1 cut(s)	689
BtsIMutI	CAGTG	1 cut(s)	432
Cac8I	GCNNGC	1 cut(s)	610
CciI	TCATGA	2 cut(s)	586, 940
CfoI	GCGC	1 cut(s)	474
Cfr13I	GGNCC	1 cut(s)	337
ClaI	ATCGAT	1 cut(s)	689
Csp6I	GTAC	1 cut(s)	92
CviAII	CATG	8 cut(s)	151, 284, 306, 331, 587, 869, 904, 941
CviQI	GTAC	1 cut(s)	92
DdeI	CTNAG	3 cut(s)	249, 778, 810
DpnI	GATC	5 cut(s)	65, 822, 831, 860, 901
DpnII	GATC	5 cut(s)	63, 820, 829, 858, 899
DraI	TTTAAA	1 cut(s)	645
EaeI	YGGCCR	1 cut(s)	318
Eco31I	GGTCTC	2 cut(s)	387, 737
Eco32I	GATATC	2 cut(s)	133, 595
Eco47III	AGCGCT	1 cut(s)	473
Eco88I	CYCGRG	2 cut(s)	723, 764
EcoNI	CCTNNNNNAGG	1 cut(s)	957
EcoRV	GATATC	2 cut(s)	133, 595
FaeI	CATG	8 cut(s)	154, 287, 309, 334, 590, 872, 907, 944
FalI	AAGNNNNNCTT	2 cut(s)	738, 770
FaqI	GGGAC	1 cut(s)	533
FatI	CATG	8 cut(s)	150, 283, 305, 330, 586, 868, 903, 940
FbaI	TGATCA	1 cut(s)	858
Fnu4HI	GCNGC	2 cut(s)	243, 300
Fsp4HI	GCNGC	2 cut(s)	243, 300
FspBI	CTAG	1 cut(s)	270
GlaI	GCGC	1 cut(s)	473
GluI	GCNGC	2 cut(s)	243, 300
GsaI	CCCAGC	1 cut(s)	81
HaeII	RGCGCY	1 cut(s)	475
HaeIII	GGCC	2 cut(s)	320, 339
HapII	CCGG	1 cut(s)	771
HhaI	GCGC	1 cut(s)	474
Hin1II	CATG	8 cut(s)	154, 287, 309, 334, 590, 872, 907, 944
Hin6I	GCGC	1 cut(s)	472
HinP1I	GCGC	1 cut(s)	472
HincII	GTYRAC	2 cut(s)	571, 976
HindII	GTYRAC	2 cut(s)	571, 976
HindIII	AAGCTT	2 cut(s)	194, 386
HinfI	GANTC	5 cut(s)	28, 274, 280, 536, 767
HpaII	CCGG	1 cut(s)	771
HphI	GGTGA	3 cut(s)	416, 572, 932
Hpy166II	GTNNAC	3 cut(s)	571, 670, 976
Hpy188I	TCNGA	4 cut(s)	279, 347, 532, 858
Hpy188III	TCNNGA	6 cut(s)	121, 587, 736, 771, 824, 941
Hpy8I	GTNNAC	3 cut(s)	571, 670, 976
HpyAV	CCTTC	4 cut(s)	218, 350, 571, 938
HpyCH4III	ACNGT	2 cut(s)	427, 658
HpyCH4V	TGCA	8 cut(s)	182, 205, 287, 299, 311, 364, 608, 875
HpyF10VI	GCNNNNNNNGC	5 cut(s)	202, 308, 317, 385, 614
HpyF3I	CTNAG	3 cut(s)	249, 778, 810
Hsp92II	CATG	8 cut(s)	154, 287, 309, 334, 590, 872, 907, 944
HspAI	GCGC	1 cut(s)	472
Kpn2I	TCCGGA	1 cut(s)	770
Ksp22I	TGATCA	1 cut(s)	858
Kzo9I	GATC	5 cut(s)	63, 820, 829, 858, 899
LmnI	GCTCC	1 cut(s)	74
Lsp1109I	GCAGC	2 cut(s)	229, 311
LweI	GCATC	3 cut(s)	229, 351, 695
MaeI	CTAG	1 cut(s)	270
MaeIII	GTNAC	2 cut(s)	560, 880
MalI	GATC	5 cut(s)	65, 822, 831, 860, 901
MboI	GATC	5 cut(s)	63, 820, 829, 858, 899
MboII	GAAGA	4 cut(s)	58, 136, 545, 602
MfeI	CAATTG	1 cut(s)	399
MflI	RGATCY	2 cut(s)	63, 899
MhlI	GDGCHC	1 cut(s)	706
MlsI	TGGCCA	1 cut(s)	320
MluCI	AATT	6 cut(s)	234, 258, 366, 399, 495, 514
MluNI	TGGCCA	1 cut(s)	320
MlyI	GAGTC	3 cut(s)	22, 289, 776
MmeI	TCCRAC	1 cut(s)	196
MnlI	CCTC	8 cut(s)	5, 54, 64, 182, 313, 719, 773, 876
Mox20I	TGGCCA	1 cut(s)	320
MroI	TCCGGA	1 cut(s)	770
MroXI	GAANNNNTTC	1 cut(s)	750
MscI	TGGCCA	1 cut(s)	320
MseI	TTAA	3 cut(s)	165, 261, 644
MslI	CAYNNNNRTG	1 cut(s)	780
Msp20I	TGGCCA	1 cut(s)	320
MspI	CCGG	1 cut(s)	771
MunI	CAATTG	1 cut(s)	399
MwoI	GCNNNNNNNGC	5 cut(s)	202, 308, 317, 385, 614
NdeII	GATC	5 cut(s)	63, 820, 829, 858, 899
NlaIII	CATG	8 cut(s)	154, 287, 309, 334, 590, 872, 907, 944
NlaIV	GGNNCC	1 cut(s)	703
NmuCI	GTSAC	1 cut(s)	560
OliI	CACNNNNGTG	1 cut(s)	780
PaeR7I	CTCGAG	1 cut(s)	764
PagI	TCATGA	2 cut(s)	586, 940
PdmI	GAANNNNTTC	1 cut(s)	750
PfeI	GAWTC	2 cut(s)	274, 536
PkrI	GCNGC	2 cut(s)	244, 301
PleI	GAGTC	3 cut(s)	22, 288, 775
PpsI	GAGTC	3 cut(s)	22, 288, 775
PsiI	TTATAA	1 cut(s)	200
PspFI	CCCAGC	1 cut(s)	77
PspN4I	GGNNCC	1 cut(s)	703
PspPI	GGNCC	1 cut(s)	337
PspXI	VCTCGAGB	1 cut(s)	764
PsuI	RGATCY	2 cut(s)	63, 899
RsaI	GTAC	1 cut(s)	93
RsaNI	GTAC	1 cut(s)	92
RseI	CAYNNNNRTG	1 cut(s)	780
SaqAI	TTAA	3 cut(s)	165, 261, 644
SatI	GCNGC	2 cut(s)	243, 300
Sau3AI	GATC	5 cut(s)	63, 820, 829, 858, 899
Sau96I	GGNCC	1 cut(s)	337
SchI	GAGTC	3 cut(s)	22, 289, 776
SduI	GDGCHC	1 cut(s)	706
SetI	ASST	9 cut(s)	16, 79, 198, 390, 562, 751, 765, 784, 868
SfaNI	GCATC	3 cut(s)	229, 351, 695
SfcI	CTRYAG	1 cut(s)	42
Sfr274I	CTCGAG	1 cut(s)	764
SlaI	CTCGAG	1 cut(s)	764
SmiMI	CAYNNNNRTG	1 cut(s)	780
SmlI	CTYRAG	1 cut(s)	764
SmoI	CTYRAG	1 cut(s)	764
Sse9I	AATT	6 cut(s)	234, 258, 366, 399, 495, 514
SsiI	CCGC	1 cut(s)	617
SspI	AATATT	2 cut(s)	451, 718
SspMI	CTAG	1 cut(s)	270
TaaI	ACNGT	2 cut(s)	427, 658
TaqI	TCGA	4 cut(s)	69, 120, 689, 765
TasI	AATT	6 cut(s)	234, 258, 366, 399, 495, 514
TfiI	GAWTC	2 cut(s)	274, 536
Tru1I	TTAA	3 cut(s)	165, 261, 644
Tru9I	TTAA	3 cut(s)	165, 261, 644
TscAI	CASTG	1 cut(s)	432
TseFI	GTSAC	1 cut(s)	560
TseI	GCWGC	2 cut(s)	242, 299
Tsp45I	GTSAC	1 cut(s)	560
TspDTI	ATGAA	8 cut(s)	167, 206, 421, 591, 603, 759, 929, 957
TspGWI	ACGGA	1 cut(s)	526
TspRI	CASTG	1 cut(s)	432
XagI	CCTNNNNNAGG	1 cut(s)	957
XapI	RAATTY	1 cut(s)	366
XhoI	CTCGAG	1 cut(s)	764
XmnI	GAANNNNTTC	1 cut(s)	750
XspI	CTAG	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.