Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004500

Physical Location & Seq

Genomic Coordinates Forward (+)

49821781 .. 49830174

Gene Structure 8394 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20291

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGTTGATAACAACAAGAAAATCACCCGTGTTCTTTTTTGCGGGCCACATTTCCCCGCTTCTCAGGATTACACGAGAGAATATTTGAACGATTACCCTTTTGTCCAGGTTGAAGATGTACCCTTTGCTGATGTGTCTGATGTTATCGAGAAGTATGATATCTGTATAGTGAAAAACATGAAGTTAGATTTTAATGTCCTCTCTCGTGCAAAAAAGATGAAGCTTATAATGCAGTATGGTGTTGGACTGGAAGGCGTTGAAATTGATGCTGCGACTAAGTTTGGAATTAAAGTCGCTAGGATTCCGAGTCATGCCACTGGAAATGCAGCCTCATGTGCAGAAATGGCCATTTATCTCATGTTGGGCCTTCTCAGAAAGCAAAATGAGATGCAAATTTCTATAAAGCAGAGAAAGCTTGGAGACCCAATTGGTGAAACACTACTTGGAAAAACAGTCTTCATTTTAGGATATGGAAATATTGGAATGGAGTTGGCAAAGCGCTTGAAACCATTTGGTGTGAAAATTATTGCCACAAAACGGAATTGGGACACTCATTCAGAAGATTCGTGCCAATCAAATGCGTTAGGTGACTTGGTTGACGAGAAGGGTGGTCATGAAGATATCCATTCATTTGCAAGCAATGCGGACATTGTTGTTTGTTGTTTGTGTTTAAATAGTGAAACAGTTGGCATTGTAAACAAGTCATTTATAGCATCGATGAGAAAGGGTGCCCTTTTGGTAAATATTGCCCGAGGGGGTCTCCTGAACTATGAAGCTGTTCTTTATTACCTCGAGTCCGGACACTTAGGTGGCTTGGGCATTGATGTTGCTTGGACTGAGCCATTTGATCCTGATGATCCCATTTTGAAGTTCAATAATGTTCTGATCACACCTCATGTTGCAGGAGTTACAGAGTATTCTTACAGATCCATGTCAAAAATAGTTGGTGATACTGCCATTCAACTTCATGAAGGGAAGCCTTTGACAGGACTGGAGTTTGTCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003008 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006081 GO:0006082 GO:0007588 GO:0008150 GO:0008152 GO:0008465 GO:0009987 GO:0016043 GO:0016491 GO:0016614 GO:0016616 GO:0016618 GO:0019752 GO:0022607 GO:0030267 GO:0031406 GO:0032501 GO:0032787 GO:0036094 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043177 GO:0043436 GO:0043648 GO:0043933 GO:0044085 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046487 GO:0046983 GO:0048037 GO:0050661 GO:0050662 GO:0051259 GO:0051287 GO:0055114 GO:0065003 GO:0070402 GO:0071704 GO:0071840 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2-Hacid_dh 2-Hacid_dh_C

Protein Analysis

335

Amino Acids

36.93

Weight (kDa)

5.93

Isoelectric Point (pI)

29.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2-Hacid_dh	PF00389	22 - 329	1.4e-14	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
2-Hacid_dh_C	PF02826	118 - 301	2.9e-42	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72190
fragaria_vesca	FvH4_5g31330 FvH4_5g31330 FvH4_5g31330 FvH4_5g31330 FvH4_5g31330 FvH4_5g31330 FvH4_5g31330
malus_domestica	MD08G1217300.v1.1
prunus_persica	Prupe.1G556800_v2.0.a1 Prupe.1G556800_v2.0.a1 Prupe.1G556800_v2.0.a1 Prupe.1G556800_v2.0.a1 Prupe.1G556800_v2.0.a1 Prupe.1G556800_v2.0.a1
pyrus_communis	pycom08g18800
rosa_chinensis	RchiOBHm_Chr7g0226521 RchiOBHm_Chr7g0226551
rosa_laevigata	RLG00000001716 RLG00000001719
rosa_multiflora	Rmu_sc0001423.1_g000008
rosa_roxburghii	Rroxscaffold_3G00232710
rosa_rugosa	Rorug07G0237900 Rorug07G0237900 Rorug07G0238000 Rorug07G0238200
rosa_samantha	Rh7BG372200 Rh7BG372500 Rh7DG384300 Rh7DG384500
rosa_wichuraiana	Rw7G032370 Rw7G032390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	227
AccB1I	GGYRCC	1 cut(s)	728
AccIII	TCCGGA	1 cut(s)	797
AciI	CCGC	3 cut(s)	42, 57, 644
AclWI	GGATC	3 cut(s)	842, 851, 921
AcoI	YGGCCR	1 cut(s)	345
AcsI	RAATTY	1 cut(s)	393
AfaI	GTAC	1 cut(s)	120
AfeI	AGCGCT	1 cut(s)	500
AfiI	CCNNNNNNNGG	2 cut(s)	537, 986
AgsI	TTSAA	7 cut(s)	88, 113, 260, 505, 868, 874, 962
AjnI	CCWGG	1 cut(s)	105
AjuI	GAANNNNNNNTTGG	2 cut(s)	426, 458
AleI	CACNNNNGTG	1 cut(s)	807
AluBI	AGCT	3 cut(s)	223, 415, 776
AluI	AGCT	3 cut(s)	223, 415, 776
Alw26I	GTCTC	2 cut(s)	414, 764
AlwI	GGATC	3 cut(s)	842, 851, 921
Ama87I	CYCGRG	2 cut(s)	750, 791
Aor13HI	TCCGGA	1 cut(s)	797
Aor51HI	AGCGCT	1 cut(s)	500
AoxI	GGCC	3 cut(s)	44, 345, 364
ApeKI	GCWGC	2 cut(s)	269, 326
ApoI	RAATTY	1 cut(s)	393
Asp700I	GAANNNNTTC	1 cut(s)	777
AspLEI	GCGC	1 cut(s)	501
AspS9I	GGNCC	2 cut(s)	44, 364
AsuHPI	GGTGA	4 cut(s)	16, 443, 599, 959
AvaI	CYCGRG	2 cut(s)	750, 791
BaeGI	GKGCMC	1 cut(s)	733
BalI	TGGCCA	1 cut(s)	347
BanI	GGYRCC	1 cut(s)	728
BauI	CACGAG	2 cut(s)	73, 204
BbsI	GAAGAC	1 cut(s)	448
BbvI	GCAGC	2 cut(s)	256, 338
BciT130I	CCWGG	1 cut(s)	107
BclI	TGATCA	1 cut(s)	885
BcoDI	GTCTC	2 cut(s)	414, 764
BfaI	CTAG	1 cut(s)	297
BfoI	RGCGCY	1 cut(s)	502
BisI	GCNGC	2 cut(s)	270, 327
BlsI	GCNGC	2 cut(s)	271, 328
Bme1390I	CCNGG	1 cut(s)	107
BmeT110I	CYCGRG	2 cut(s)	750, 791
BmgT120I	GGNCC	2 cut(s)	44, 364
BmiI	GGNNCC	1 cut(s)	730
BmrFI	CCNGG	1 cut(s)	107
BmsI	GCATC	3 cut(s)	256, 378, 722
BpiI	GAAGAC	1 cut(s)	448
BplI	GAGNNNNNCTC	2 cut(s)	744, 776
Bsa29I	ATCGAT	1 cut(s)	716
BsaI	GGTCTC	2 cut(s)	414, 764
BsaJI	CCNNGG	1 cut(s)	751
BsaWI	WCCGGW	1 cut(s)	797
Bsc4I	CCNNNNNNNGG	2 cut(s)	537, 986
Bse1I	ACTGG	3 cut(s)	252, 322, 996
Bse3DI	GCAATG	1 cut(s)	646
BseAI	TCCGGA	1 cut(s)	797
BseBI	CCWGG	1 cut(s)	107
BseCI	ATCGAT	1 cut(s)	716
BseDI	CCNNGG	1 cut(s)	751
BseLI	CCNNNNNNNGG	2 cut(s)	537, 986
BseMI	GCAATG	1 cut(s)	646
BseMII	CTCAG	3 cut(s)	77, 385, 828
BseNI	ACTGG	3 cut(s)	252, 322, 996
BseSI	GKGCMC	1 cut(s)	733
BseXI	GCAGC	2 cut(s)	256, 338
BsgI	GTGCAG	1 cut(s)	357
BshFI	GGCC	3 cut(s)	46, 347, 366
BshNI	GGYRCC	1 cut(s)	728
BshVI	ATCGAT	1 cut(s)	716
BsiHKCI	CYCGRG	2 cut(s)	750, 791
BsiSI	CCGG	1 cut(s)	798
BslFI	GGGAC	1 cut(s)	560
BslI	CCNNNNNNNGG	2 cut(s)	537, 986
BsmAI	GTCTC	2 cut(s)	414, 764
BsmFI	GGGAC	1 cut(s)	560
BsnI	GGCC	3 cut(s)	46, 347, 366
Bso31I	GGTCTC	2 cut(s)	414, 764
BsoBI	CYCGRG	2 cut(s)	750, 791
Bsp1286I	GDGCHC	1 cut(s)	733
Bsp13I	TCCGGA	1 cut(s)	797
Bsp143I	GATC	4 cut(s)	847, 856, 885, 926
BspACI	CCGC	3 cut(s)	42, 57, 644
BspANI	GGCC	3 cut(s)	46, 347, 366
BspCNI	CTCAG	3 cut(s)	76, 384, 829
BspDI	ATCGAT	1 cut(s)	716
BspEI	TCCGGA	1 cut(s)	797
BspHI	TCATGA	2 cut(s)	613, 967
BspLI	GGNNCC	1 cut(s)	730
BspPI	GGATC	3 cut(s)	842, 851, 921
BspT107I	GGYRCC	1 cut(s)	728
BspTNI	GGTCTC	2 cut(s)	414, 764
BsrDI	GCAATG	1 cut(s)	646
BsrI	ACTGG	3 cut(s)	252, 322, 996
BssECI	CCNNGG	1 cut(s)	751
BssMI	GATC	4 cut(s)	847, 856, 885, 926
BssSI	CACGAG	2 cut(s)	73, 204
Bst2BI	CACGAG	2 cut(s)	73, 204
Bst2UI	CCWGG	1 cut(s)	107
Bst4CI	ACNGT	2 cut(s)	454, 685
BstAPI	GCANNNNNTGC	1 cut(s)	641
BstC8I	GCNNGC	2 cut(s)	44, 637
BstDEI	CTNAG	5 cut(s)	63, 276, 371, 805, 837
BstENI	CCTNNNNNAGG	1 cut(s)	984
BstH2I	RGCGCY	1 cut(s)	502
BstHHI	GCGC	1 cut(s)	501
BstKTI	GATC	4 cut(s)	850, 859, 888, 929
BstMAI	GTCTC	2 cut(s)	414, 764
BstMBI	GATC	4 cut(s)	847, 856, 885, 926
BstMWI	GCNNNNNNNGC	5 cut(s)	229, 335, 344, 412, 641
BstNI	CCWGG	1 cut(s)	107
BstSCI	CCNGG	1 cut(s)	105
BstSLI	GKGCMC	1 cut(s)	733
BstV1I	GCAGC	2 cut(s)	256, 338
BstV2I	GAAGAC	1 cut(s)	448
BstX2I	RGATCY	1 cut(s)	926
BstYI	RGATCY	1 cut(s)	926
Bsu15I	ATCGAT	1 cut(s)	716
BsuRI	GGCC	3 cut(s)	46, 347, 366
BsuTUI	ATCGAT	1 cut(s)	716
BtsIMutI	CAGTG	1 cut(s)	315
Cac8I	GCNNGC	2 cut(s)	44, 637
CciI	TCATGA	2 cut(s)	613, 967
CfoI	GCGC	1 cut(s)	501
Cfr13I	GGNCC	2 cut(s)	44, 364
ClaI	ATCGAT	1 cut(s)	716
Csp6I	GTAC	1 cut(s)	119
CviAII	CATG	8 cut(s)	178, 311, 333, 358, 614, 896, 931, 968
CviQI	GTAC	1 cut(s)	119
DdeI	CTNAG	5 cut(s)	63, 276, 371, 805, 837
DpnI	GATC	4 cut(s)	849, 858, 887, 928
DpnII	GATC	4 cut(s)	847, 856, 885, 926
DraI	TTTAAA	1 cut(s)	672
EaeI	YGGCCR	1 cut(s)	345
Eco31I	GGTCTC	2 cut(s)	414, 764
Eco32I	GATATC	2 cut(s)	160, 622
Eco47III	AGCGCT	1 cut(s)	500
Eco88I	CYCGRG	2 cut(s)	750, 791
EcoNI	CCTNNNNNAGG	1 cut(s)	984
EcoRII	CCWGG	1 cut(s)	105
EcoRV	GATATC	2 cut(s)	160, 622
FaeI	CATG	8 cut(s)	181, 314, 336, 361, 617, 899, 934, 971
FalI	AAGNNNNNCTT	2 cut(s)	765, 797
FaqI	GGGAC	1 cut(s)	560
FatI	CATG	8 cut(s)	177, 310, 332, 357, 613, 895, 930, 967
FauI	CCCGC	2 cut(s)	35, 64
FbaI	TGATCA	1 cut(s)	885
Fnu4HI	GCNGC	2 cut(s)	270, 327
Fsp4HI	GCNGC	2 cut(s)	270, 327
FspBI	CTAG	1 cut(s)	297
GlaI	GCGC	1 cut(s)	500
GluI	GCNGC	2 cut(s)	270, 327
HaeII	RGCGCY	1 cut(s)	502
HaeIII	GGCC	3 cut(s)	46, 347, 366
HapII	CCGG	1 cut(s)	798
HhaI	GCGC	1 cut(s)	501
Hin1II	CATG	8 cut(s)	181, 314, 336, 361, 617, 899, 934, 971
Hin6I	GCGC	1 cut(s)	499
HinP1I	GCGC	1 cut(s)	499
HincII	GTYRAC	2 cut(s)	598, 1003
HindII	GTYRAC	2 cut(s)	598, 1003
HindIII	AAGCTT	2 cut(s)	221, 413
HinfI	GANTC	4 cut(s)	301, 307, 563, 794
HpaII	CCGG	1 cut(s)	798
HphI	GGTGA	4 cut(s)	16, 443, 599, 959
Hpy166II	GTNNAC	3 cut(s)	598, 697, 1003
Hpy188I	TCNGA	5 cut(s)	139, 306, 374, 559, 885
Hpy188III	TCNNGA	7 cut(s)	65, 148, 614, 763, 798, 851, 968
Hpy8I	GTNNAC	3 cut(s)	598, 697, 1003
HpyAV	CCTTC	4 cut(s)	245, 377, 598, 965
HpyCH4III	ACNGT	2 cut(s)	454, 685
HpyCH4V	TGCA	7 cut(s)	209, 232, 326, 338, 391, 635, 902
HpyF10VI	GCNNNNNNNGC	5 cut(s)	229, 335, 344, 412, 641
HpyF3I	CTNAG	5 cut(s)	63, 276, 371, 805, 837
Hsp92II	CATG	8 cut(s)	181, 314, 336, 361, 617, 899, 934, 971
HspAI	GCGC	1 cut(s)	499
Kpn2I	TCCGGA	1 cut(s)	797
Ksp22I	TGATCA	1 cut(s)	885
Kzo9I	GATC	4 cut(s)	847, 856, 885, 926
Lsp1109I	GCAGC	2 cut(s)	256, 338
LweI	GCATC	3 cut(s)	256, 378, 722
MaeI	CTAG	1 cut(s)	297
MaeIII	GTNAC	2 cut(s)	587, 907
MalI	GATC	4 cut(s)	849, 858, 887, 928
MboI	GATC	4 cut(s)	847, 856, 885, 926
MboII	GAAGA	4 cut(s)	125, 448, 572, 629
MfeI	CAATTG	1 cut(s)	426
MflI	RGATCY	1 cut(s)	926
MhlI	GDGCHC	1 cut(s)	733
MlsI	TGGCCA	1 cut(s)	347
MluCI	AATT	6 cut(s)	261, 285, 393, 426, 522, 541
MluNI	TGGCCA	1 cut(s)	347
MlyI	GAGTC	2 cut(s)	316, 803
MmeI	TCCRAC	1 cut(s)	223
MnlI	CCTC	5 cut(s)	209, 340, 746, 800, 903
Mox20I	TGGCCA	1 cut(s)	347
MroI	TCCGGA	1 cut(s)	797
MroXI	GAANNNNTTC	1 cut(s)	777
MscI	TGGCCA	1 cut(s)	347
MseI	TTAA	3 cut(s)	192, 288, 671
MslI	CAYNNNNRTG	1 cut(s)	807
Msp20I	TGGCCA	1 cut(s)	347
MspI	CCGG	1 cut(s)	798
MspR9I	CCNGG	1 cut(s)	107
MunI	CAATTG	1 cut(s)	426
MvaI	CCWGG	1 cut(s)	107
MwoI	GCNNNNNNNGC	5 cut(s)	229, 335, 344, 412, 641
NdeII	GATC	4 cut(s)	847, 856, 885, 926
NlaIII	CATG	8 cut(s)	181, 314, 336, 361, 617, 899, 934, 971
NlaIV	GGNNCC	1 cut(s)	730
NmuCI	GTSAC	1 cut(s)	587
OliI	CACNNNNGTG	1 cut(s)	807
PaeR7I	CTCGAG	1 cut(s)	791
PagI	TCATGA	2 cut(s)	613, 967
PdmI	GAANNNNTTC	1 cut(s)	777
PfeI	GAWTC	2 cut(s)	301, 563
PkrI	GCNGC	2 cut(s)	271, 328
PleI	GAGTC	2 cut(s)	315, 802
PpsI	GAGTC	2 cut(s)	315, 802
PsiI	TTATAA	1 cut(s)	227
Psp6I	CCWGG	1 cut(s)	105
PspGI	CCWGG	1 cut(s)	105
PspN4I	GGNNCC	1 cut(s)	730
PspPI	GGNCC	2 cut(s)	44, 364
PspXI	VCTCGAGB	1 cut(s)	791
PsuI	RGATCY	1 cut(s)	926
RsaI	GTAC	1 cut(s)	120
RsaNI	GTAC	1 cut(s)	119
RseI	CAYNNNNRTG	1 cut(s)	807
SaqAI	TTAA	3 cut(s)	192, 288, 671
SatI	GCNGC	2 cut(s)	270, 327
Sau3AI	GATC	4 cut(s)	847, 856, 885, 926
Sau96I	GGNCC	2 cut(s)	44, 364
SchI	GAGTC	2 cut(s)	316, 803
ScrFI	CCNGG	1 cut(s)	107
SduI	GDGCHC	1 cut(s)	733
SetI	ASST	8 cut(s)	111, 225, 417, 589, 778, 792, 811, 895
SfaNI	GCATC	3 cut(s)	256, 378, 722
Sfr274I	CTCGAG	1 cut(s)	791
SlaI	CTCGAG	1 cut(s)	791
SmiMI	CAYNNNNRTG	1 cut(s)	807
SmlI	CTYRAG	1 cut(s)	791
SmoI	CTYRAG	1 cut(s)	791
Sse9I	AATT	6 cut(s)	261, 285, 393, 426, 522, 541
SsiI	CCGC	3 cut(s)	42, 57, 644
SspI	AATATT	3 cut(s)	83, 478, 745
SspMI	CTAG	1 cut(s)	297
StyD4I	CCNGG	1 cut(s)	105
TaaI	ACNGT	2 cut(s)	454, 685
TaqI	TCGA	3 cut(s)	147, 716, 792
TasI	AATT	6 cut(s)	261, 285, 393, 426, 522, 541
TfiI	GAWTC	2 cut(s)	301, 563
Tru1I	TTAA	3 cut(s)	192, 288, 671
Tru9I	TTAA	3 cut(s)	192, 288, 671
TscAI	CASTG	1 cut(s)	322
TseFI	GTSAC	1 cut(s)	587
TseI	GCWGC	2 cut(s)	269, 326
Tsp45I	GTSAC	1 cut(s)	587
TspDTI	ATGAA	8 cut(s)	194, 233, 448, 618, 630, 786, 956, 984
TspGWI	ACGGA	1 cut(s)	553
TspRI	CASTG	1 cut(s)	322
XagI	CCTNNNNNAGG	1 cut(s)	984
XapI	RAATTY	1 cut(s)	393
XhoI	CTCGAG	1 cut(s)	791
XmnI	GAANNNNTTC	1 cut(s)	777
XspI	CTAG	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.