Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004500

Physical Location & Seq

Genomic Coordinates Reverse (-)

21903129 .. 21903849

Gene Structure 721 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0238200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGTCATTAAAAATTTTCAAAAGGAATTTACTTCTGCTAGCTCTATTTGGGGTGATTAGTTGGCTAATCTGGAAGAACTGTAATGCTTGCAAGTTTGGGAACAATGTAACAGAAGGAGAGCAGGTCATCATTCAGAAATCCTCTCCTCAAGTTAGTCAGCCTTCTGCTTGGTCTCCACCTGCCTCATCTTGTTTGAAGCTTAACACTGATGCTTCGTGCAACTTCAAAGATGGGAAGGCACGGTTAGGTGTAGTTGTGAGGGACAGTGATGGGAATTCGCGAGTGAATGTGGTTGAAGCTATTAATTCCACCCATTTTGATCTGAGCATGGAATCACCTATTTTTGATGCAATAAGAAGATTGAAACCAGCTTTTGAAGTGATCAGTTGCAAGAAAATATCAAGGAATAGCAATCGTGCTGCTGATATGCTAGCCAAAGAAGCTGTGAAAGTAGATAGTATAAAGTTATGGAAAGAAATAGGACCTCCTTGGTTCCATGAATATGTAATTGCTGATTTGTCTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003008 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006081 GO:0006082 GO:0007588 GO:0008150 GO:0008152 GO:0008465 GO:0009987 GO:0016043 GO:0016491 GO:0016614 GO:0016616 GO:0016618 GO:0019752 GO:0022607 GO:0030267 GO:0031406 GO:0032501 GO:0032787 GO:0036094 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043177 GO:0043436 GO:0043648 GO:0043933 GO:0044085 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046487 GO:0046983 GO:0048037 GO:0050661 GO:0050662 GO:0051259 GO:0051287 GO:0055114 GO:0065003 GO:0070402 GO:0071704 GO:0071840 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2-Hacid_dh 2-Hacid_dh_C

Protein Analysis

175

Amino Acids

19.46

Weight (kDa)

9.16

Isoelectric Point (pI)

46.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72190
fragaria_vesca	FvH4_5g31330 FvH4_5g31330 FvH4_5g31330 FvH4_5g31330 FvH4_5g31330 FvH4_5g31330 FvH4_5g31330
malus_domestica	MD08G1217300.v1.1
prunus_persica	Prupe.1G556800_v2.0.a1 Prupe.1G556800_v2.0.a1 Prupe.1G556800_v2.0.a1 Prupe.1G556800_v2.0.a1 Prupe.1G556800_v2.0.a1 Prupe.1G556800_v2.0.a1
pyrus_communis	pycom08g18800
rosa_chinensis	RchiOBHm_Chr7g0226521 RchiOBHm_Chr7g0226551
rosa_laevigata	RLG00000001716 RLG00000001719
rosa_multiflora	Rmu_sc0001423.1_g000008
rosa_roxburghii	Rroxscaffold_3G00232710
rosa_rugosa	Rorug07G0237900 Rorug07G0237900 Rorug07G0238000 Rorug07G0238200
rosa_samantha	Rh7BG372200 Rh7BG372500 Rh7DG384300 Rh7DG384500
rosa_wichuraiana	Rw7G032370 Rw7G032390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	187
Acc36I	ACCTGC	2 cut(s)	112, 187
AccII	CGCG	1 cut(s)	280
AcsI	RAATTY	3 cut(s)	12, 25, 274
AgsI	TTSAA	6 cut(s)	19, 196, 226, 296, 364, 377
AluBI	AGCT	5 cut(s)	41, 199, 299, 371, 443
AluI	AGCT	5 cut(s)	41, 199, 299, 371, 443
Alw26I	GTCTC	1 cut(s)	177
ApeKI	GCWGC	1 cut(s)	419
ApoI	RAATTY	3 cut(s)	12, 25, 274
AseI	ATTAAT	1 cut(s)	303
AspS9I	GGNCC	1 cut(s)	482
AsuHPI	GGTGA	2 cut(s)	64, 327
AsuNHI	GCTAGC	2 cut(s)	37, 430
AvaII	GGWCC	1 cut(s)	482
BbvI	GCAGC	1 cut(s)	406
BccI	CCATC	2 cut(s)	224, 263
BclI	TGATCA	1 cut(s)	381
BcoDI	GTCTC	1 cut(s)	177
BfaI	CTAG	3 cut(s)	38, 431, 522
BfuAI	ACCTGC	2 cut(s)	112, 187
BisI	GCNGC	1 cut(s)	420
BlsI	GCNGC	1 cut(s)	421
Bme18I	GGWCC	1 cut(s)	482
BmgT120I	GGNCC	1 cut(s)	482
BmiI	GGNNCC	1 cut(s)	494
BmsI	GCATC	2 cut(s)	199, 337
BmtI	GCTAGC	2 cut(s)	41, 434
BpuEI	CTTGAG	1 cut(s)	132
BsaI	GGTCTC	1 cut(s)	177
BsaJI	CCNNGG	1 cut(s)	488
BsaXI	ACNNNNNCTCC	2 cut(s)	108, 138
BseDI	CCNNGG	1 cut(s)	488
BseMII	CTCAG	1 cut(s)	314
BseRI	GAGGAG	1 cut(s)	135
BseXI	GCAGC	1 cut(s)	406
Bsh1236I	CGCG	1 cut(s)	280
BslFI	GGGAC	1 cut(s)	275
BsmAI	GTCTC	1 cut(s)	177
BsmFI	GGGAC	1 cut(s)	275
Bso31I	GGTCTC	1 cut(s)	177
Bsp143I	GATC	2 cut(s)	319, 381
Bsp68I	TCGCGA	1 cut(s)	280
BspCNI	CTCAG	1 cut(s)	315
BspFNI	CGCG	1 cut(s)	280
BspLI	GGNNCC	1 cut(s)	494
BspMI	ACCTGC	2 cut(s)	112, 187
BspOI	GCTAGC	2 cut(s)	41, 434
BspTNI	GGTCTC	1 cut(s)	177
BssECI	CCNNGG	1 cut(s)	488
BssMI	GATC	2 cut(s)	319, 381
BssT1I	CCWWGG	1 cut(s)	488
Bst4CI	ACNGT	3 cut(s)	80, 243, 266
BstC8I	GCNNGC	3 cut(s)	39, 88, 432
BstDEI	CTNAG	1 cut(s)	323
BstFNI	CGCG	1 cut(s)	280
BstKTI	GATC	2 cut(s)	322, 384
BstMAI	GTCTC	1 cut(s)	177
BstMBI	GATC	2 cut(s)	319, 381
BstMWI	GCNNNNNNNGC	1 cut(s)	440
BstUI	CGCG	1 cut(s)	280
BstV1I	GCAGC	1 cut(s)	406
BtsIMutI	CAGTG	2 cut(s)	204, 271
BtuMI	TCGCGA	1 cut(s)	280
BveI	ACCTGC	2 cut(s)	112, 187
Cac8I	GCNNGC	3 cut(s)	39, 88, 432
Cfr13I	GGNCC	1 cut(s)	482
CspCI	CAANNNNNGTGG	2 cut(s)	298, 333
CviAII	CATG	2 cut(s)	328, 497
CviJI	RGCY	8 cut(s)	41, 64, 160, 199, 299, 371, 434, 443
CviKI_1	RGCY	8 cut(s)	41, 64, 160, 199, 299, 371, 434, 443
DdeI	CTNAG	1 cut(s)	323
DpnI	GATC	2 cut(s)	321, 383
DpnII	GATC	2 cut(s)	319, 381
Eco130I	CCWWGG	1 cut(s)	488
Eco31I	GGTCTC	1 cut(s)	177
Eco47I	GGWCC	1 cut(s)	482
EcoO109I	RGGNCCY	1 cut(s)	482
EcoRI	GAATTC	1 cut(s)	274
EcoT14I	CCWWGG	1 cut(s)	488
ErhI	CCWWGG	1 cut(s)	488
FaeI	CATG	2 cut(s)	331, 500
FaiI	YATR	6 cut(s)	329, 428, 461, 469, 498, 504
FaqI	GGGAC	1 cut(s)	275
FatI	CATG	2 cut(s)	327, 496
FbaI	TGATCA	1 cut(s)	381
Fnu4HI	GCNGC	1 cut(s)	420
Fsp4HI	GCNGC	1 cut(s)	420
FspBI	CTAG	3 cut(s)	38, 431, 522
GluI	GCNGC	1 cut(s)	420
Hin1II	CATG	2 cut(s)	331, 500
HindIII	AAGCTT	1 cut(s)	197
HinfI	GANTC	1 cut(s)	332
HphI	GGTGA	2 cut(s)	64, 327
Hpy188I	TCNGA	2 cut(s)	135, 324
Hpy188III	TCNNGA	2 cut(s)	70, 279
HpyAV	CCTTC	3 cut(s)	107, 171, 229
HpyCH4III	ACNGT	3 cut(s)	80, 243, 266
HpyCH4V	TGCA	4 cut(s)	90, 219, 350, 390
HpyF10VI	GCNNNNNNNGC	1 cut(s)	440
HpyF3I	CTNAG	1 cut(s)	323
Hsp92II	CATG	2 cut(s)	331, 500
Ksp22I	TGATCA	1 cut(s)	381
Kzo9I	GATC	2 cut(s)	319, 381
LpnPI	CCDG	4 cut(s)	55, 107, 192, 381
Lsp1109I	GCAGC	1 cut(s)	406
LweI	GCATC	2 cut(s)	199, 337
MaeI	CTAG	3 cut(s)	38, 431, 522
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	2 cut(s)	321, 383
MboI	GATC	2 cut(s)	319, 381
MboII	GAAGA	2 cut(s)	85, 369
MluCI	AATT	5 cut(s)	12, 25, 274, 304, 507
MnlI	CCTC	5 cut(s)	151, 156, 193, 252, 495
MseI	TTAA	3 cut(s)	8, 201, 303
MslI	CAYNNNNRTG	1 cut(s)	501
MvnI	CGCG	1 cut(s)	280
MwoI	GCNNNNNNNGC	1 cut(s)	440
NdeII	GATC	2 cut(s)	319, 381
NheI	GCTAGC	2 cut(s)	37, 430
NlaIII	CATG	2 cut(s)	331, 500
NlaIV	GGNNCC	1 cut(s)	494
NruI	TCGCGA	1 cut(s)	280
PaqCI	CACCTGC	1 cut(s)	187
PfeI	GAWTC	1 cut(s)	332
PkrI	GCNGC	1 cut(s)	421
PpuMI	RGGWCCY	1 cut(s)	482
PshBI	ATTAAT	1 cut(s)	303
Psp5II	RGGWCCY	1 cut(s)	482
PspN4I	GGNNCC	1 cut(s)	494
PspPI	GGNCC	1 cut(s)	482
PspPPI	RGGWCCY	1 cut(s)	482
RruI	TCGCGA	1 cut(s)	280
RseI	CAYNNNNRTG	1 cut(s)	501
SaqAI	TTAA	3 cut(s)	8, 201, 303
SatI	GCNGC	1 cut(s)	420
Sau3AI	GATC	2 cut(s)	319, 381
Sau96I	GGNCC	1 cut(s)	482
SfaNI	GCATC	2 cut(s)	199, 337
SinI	GGWCC	1 cut(s)	482
SmiMI	CAYNNNNRTG	1 cut(s)	501
SmlI	CTYRAG	1 cut(s)	147
SmoI	CTYRAG	1 cut(s)	147
Sse9I	AATT	5 cut(s)	12, 25, 274, 304, 507
SspMI	CTAG	3 cut(s)	38, 431, 522
StyI	CCWWGG	1 cut(s)	488
TaaI	ACNGT	3 cut(s)	80, 243, 266
TasI	AATT	5 cut(s)	12, 25, 274, 304, 507
TfiI	GAWTC	1 cut(s)	332
Tru1I	TTAA	3 cut(s)	8, 201, 303
Tru9I	TTAA	3 cut(s)	8, 201, 303
TscAI	CASTG	2 cut(s)	211, 271
TseI	GCWGC	1 cut(s)	419
TspDTI	ATGAA	1 cut(s)	513
TspRI	CASTG	2 cut(s)	211, 271
VpaK11BI	GGWCC	1 cut(s)	482
VspI	ATTAAT	1 cut(s)	303
XapI	RAATTY	3 cut(s)	12, 25, 274
XspI	CTAG	3 cut(s)	38, 431, 522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.