AT1G73840

Transcription termination and cleavage factor C-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010390
Physical Location & Seq
Reverse (-)
27763617 .. 27766372
2756 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G73840.2

Sequence Viewer

Length: 1167 bp
ATGGCGGGTAAGCAGATCGGCGGAGACGGAGGTTTACCGGCAAATCTCGCCGGAATGACTAAAAGTCAGCTCTATGATATTATGTCTCAAATGAAGACGTTGATTGATCAAAACCATCAACAAGCGAGGGAGATTCTGATTCGGAACCCTCTTTTGACGAAGGCTCTTTTCCAGGCACAAATCATGCTCGGAATGGTTCAGCCTCCTCAAGTGACTCCGAAAGTTGAGCCACAAGCTGTACAACAACCTCAACAATCTCATCAATCTATCCCGCCAAAGCCAAACGTTCAAGCTCATATGTCTTCTTTCCAAGGCGGTGGCAGTGTACATGAGCCAGCCAATACGATGCAGCCACAAGCCCCGATTCGAAAACACCCAACACCACAACCAATGCCTATGCCTCCACCACCGCCTTCTGTTTCTGCAAATAGTGCTCAATCACAGCCTCGTTTTTCGCATCCCCAGCGTCAGGGACATCTGAATCCTGCTGTCACTTCTATGTCTCATCCACAGTCTTCTCAAGTTCAAAACGCGCCTCCTCCGGCTTCCCATCATCCAACATCCCAGCAACCTCCTTTTCATCATCTTGATATACCAGCTTCCTCCACTCAGTTGCAACAACAACCAATGCACTCTGGTGGAGGTCCTCATGTGGCACAGCAACAGTCTAGACCATATCATCATCAATATGGACAAGCTCAAACTGGTCCAAACACTGGATTTCAGCACCATGGCGCACCTACTCAGCATCTTTCTCAACCCATGTATCATTCAGGCAACAGACCCCCTGCTTCCGGTGGACCTCAATTCCCGCAGGGACAGCCACATCTGCCTAGTCAGCCAACATATCAGGGAGGAGGTCAATATCGTGGAGACTACAACAATAACCAATTAGCAGGTCTGATGGCTCAAGACAGAGGTCCTTCTTGGATGGCTGGCCAATCAGAGAGCTCGAACATTACTCATCTGCCAGGCTTAGGACCGGTGCCTCCACCAAGCCAAGTTGGGCCTGGAGGTGGCCCACCACCTCGCCCTGCACCGATATCTGCAGAGATGGAGAAGGCACTACTTCAACAAGTGATGAGCCTTACACCAGAGCAGATCAATCTGCTGCCACCAGAACAGAGAAACCAAGTCCTTCAGCTTCAACAGATTCTCCGACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CSTF2_hinge CSTF_C

Protein Analysis

388

Amino Acids

41.83

Weight (kDa)

9.69

Isoelectric Point (pI)

77.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CSTF_C PF14304 293 - 327 7.9e-10 Transcription termination and cleavage factor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 887
AccB1I GGYRCC 1 cut(s) 985
AccB7I CCANNNNNTGG 1 cut(s) 716
AccII CGCG 1 cut(s) 533
AciI CCGC 6 cut(s) 5, 21, 272, 315, 410, 812
AclI AACGTT 1 cut(s) 285
AcoI YGGCCR 1 cut(s) 937
AcuI CTGAAG 1 cut(s) 1124
AfaI GTAC 2 cut(s) 240, 327
AfiI CCNNNNNNNGG 5 cut(s) 469, 716, 794, 977, 1016
AgeI ACCGGT 1 cut(s) 982
AgsI TTSAA 4 cut(s) 290, 527, 1073, 1148
AhdI GACNNNNNGTC 1 cut(s) 63
AjnI CCWGG 3 cut(s) 171, 970, 1009
AleI CACNNNNGTG 1 cut(s) 636
AluBI AGCT 7 cut(s) 70, 236, 293, 599, 698, 951, 1144
AluI AGCT 7 cut(s) 70, 236, 293, 599, 698, 951, 1144
Alw21I GWGCWC 2 cut(s) 436, 953
Alw26I GTCTC 4 cut(s) 18, 90, 507, 867
AoxI GGCC 3 cut(s) 937, 1007, 1018
ApeKI GCWGC 2 cut(s) 349, 1111
AsiGI ACCGGT 1 cut(s) 982
AspLEI GCGC 2 cut(s) 535, 737
AspS9I GGNCC 7 cut(s) 644, 707, 800, 920, 980, 1007, 1019
AsuII TTCGAA 1 cut(s) 367
AvaII GGWCC 5 cut(s) 644, 707, 800, 920, 980
BaeI ACNNNNGTAYC 2 cut(s) 749, 782
BalI TGGCCA 1 cut(s) 939
BanI GGYRCC 1 cut(s) 985
BanII GRGCYC 1 cut(s) 953
BbsI GAAGAC 3 cut(s) 101, 294, 507
Bbv12I GWGCWC 2 cut(s) 436, 953
BbvI GCAGC 2 cut(s) 361, 1098
BccI CCATC 5 cut(s) 123, 558, 898, 925, 1048
BciT130I CCWGG 3 cut(s) 173, 972, 1011
BclI TGATCA 1 cut(s) 106
BcoDI GTCTC 4 cut(s) 18, 90, 507, 867
BfaI CTAG 2 cut(s) 669, 834
BfmI CTRYAG 1 cut(s) 1047
BfuAI ACCTGC 1 cut(s) 887
BisI GCNGC 2 cut(s) 350, 1112
BlsI GCNGC 2 cut(s) 351, 1113
Bme1390I CCNGG 3 cut(s) 173, 972, 1011
Bme18I GGWCC 5 cut(s) 644, 707, 800, 920, 980
BmeRI GACNNNNNGTC 1 cut(s) 63
BmgT120I GGNCC 7 cut(s) 644, 707, 800, 920, 980, 1007, 1019
BmiI GGNNCC 2 cut(s) 146, 987
BmrFI CCNGG 3 cut(s) 173, 972, 1011
BmsI GCATC 3 cut(s) 336, 466, 757
BoxI GACNNNNGTC 1 cut(s) 918
BpiI GAAGAC 3 cut(s) 101, 294, 507
BpmI CTGGAG 1 cut(s) 1032
Bpu10I CCTNAGC 1 cut(s) 976
Bpu14I TTCGAA 1 cut(s) 367
BpuEI CTTGAG 3 cut(s) 192, 504, 894
BsaJI CCNNGG 2 cut(s) 310, 730
BsaWI WCCGGW 2 cut(s) 794, 982
BsaXI ACNNNNNCTCC 1 cut(s) 1140
Bsc4I CCNNNNNNNGG 5 cut(s) 469, 716, 794, 977, 1016
Bse118I RCCGGY 2 cut(s) 37, 982
Bse1I ACTGG 2 cut(s) 709, 721
BseBI CCWGG 3 cut(s) 173, 972, 1011
BseDI CCNNGG 2 cut(s) 310, 730
BseGI GGATG 5 cut(s) 457, 505, 553, 560, 936
BseLI CCNNNNNNNGG 5 cut(s) 469, 716, 794, 977, 1016
BseMII CTCAG 2 cut(s) 623, 758
BseNI ACTGG 2 cut(s) 709, 721
BseRI GAGGAG 3 cut(s) 195, 528, 870
BseXI GCAGC 2 cut(s) 361, 1098
BseYI CCCAGC 2 cut(s) 462, 564
BsgI GTGCAG 1 cut(s) 1020
Bsh1236I CGCG 1 cut(s) 533
BshFI GGCC 3 cut(s) 939, 1009, 1020
BshNI GGYRCC 1 cut(s) 985
BshTI ACCGGT 1 cut(s) 982
BsiHKAI GWGCWC 2 cut(s) 436, 953
BsiSI CCGG 5 cut(s) 38, 51, 542, 795, 983
BslFI GGGAC 2 cut(s) 486, 831
BslI CCNNNNNNNGG 5 cut(s) 469, 716, 794, 977, 1016
BsmAI GTCTC 4 cut(s) 18, 90, 507, 867
BsmBI CGTCTC 1 cut(s) 18
BsmFI GGGAC 2 cut(s) 486, 831
BsnI GGCC 3 cut(s) 939, 1009, 1020
Bsp119I TTCGAA 1 cut(s) 367
Bsp1286I GDGCHC 2 cut(s) 436, 953
Bsp1407I TGTACA 2 cut(s) 238, 325
Bsp143I GATC 3 cut(s) 15, 106, 1101
Bsp19I CCATGG 1 cut(s) 730
BspACI CCGC 6 cut(s) 5, 21, 272, 315, 410, 812
BspANI GGCC 3 cut(s) 939, 1009, 1020
BspCNI CTCAG 2 cut(s) 622, 757
BspFNI CGCG 1 cut(s) 533
BspLI GGNNCC 2 cut(s) 146, 987
BspMAI CTGCAG 1 cut(s) 1051
BspMI ACCTGC 1 cut(s) 887
BspT104I TTCGAA 1 cut(s) 367
BspT107I GGYRCC 1 cut(s) 985
BsrFI RCCGGY 2 cut(s) 37, 982
BsrGI TGTACA 2 cut(s) 238, 325
BsrI ACTGG 2 cut(s) 709, 721
BssAI RCCGGY 2 cut(s) 37, 982
BssECI CCNNGG 2 cut(s) 310, 730
BssMI GATC 3 cut(s) 15, 106, 1101
BssT1I CCWWGG 2 cut(s) 310, 730
Bst2UI CCWGG 3 cut(s) 173, 972, 1011
Bst4CI ACNGT 3 cut(s) 513, 666, 1164
BstAPI GCANNNNNTGC 1 cut(s) 431
BstAUI TGTACA 2 cut(s) 238, 325
BstBI TTCGAA 1 cut(s) 367
BstC8I GCNNGC 2 cut(s) 336, 937
BstDEI CTNAG 3 cut(s) 609, 744, 976
BstDSI CCRYGG 1 cut(s) 730
BstF5I GGATG 5 cut(s) 457, 505, 553, 560, 936
BstFNI CGCG 1 cut(s) 533
BstHHI GCGC 2 cut(s) 535, 737
BstKTI GATC 3 cut(s) 18, 109, 1104
BstMAI GTCTC 4 cut(s) 18, 90, 507, 867
BstMBI GATC 3 cut(s) 15, 106, 1101
BstMWI GCNNNNNNNGC 6 cut(s) 47, 431, 463, 820, 829, 838
BstNI CCWGG 3 cut(s) 173, 972, 1011
BstPAI GACNNNNGTC 1 cut(s) 918
BstSCI CCNGG 3 cut(s) 171, 970, 1009
BstSFI CTRYAG 1 cut(s) 1047
BstUI CGCG 1 cut(s) 533
BstV1I GCAGC 2 cut(s) 361, 1098
BstV2I GAAGAC 3 cut(s) 101, 294, 507
BstXI CCANNNNNNTGG 1 cut(s) 317
BsuRI GGCC 3 cut(s) 939, 1009, 1020
BtgI CCRYGG 1 cut(s) 730
BtsCI GGATG 5 cut(s) 457, 505, 553, 560, 936
BtsI GCAGTG 1 cut(s) 328
BtsIMutI CAGTG 2 cut(s) 328, 714
BveI ACCTGC 1 cut(s) 887
Cac8I GCNNGC 2 cut(s) 336, 937
CfoI GCGC 2 cut(s) 535, 737
Cfr10I RCCGGY 2 cut(s) 37, 982
Cfr13I GGNCC 7 cut(s) 644, 707, 800, 920, 980, 1007, 1019
CseI GACGC 1 cut(s) 455
Csp6I GTAC 2 cut(s) 239, 326
CspAI ACCGGT 1 cut(s) 982
CviAII CATG 5 cut(s) 184, 329, 650, 731, 763
CviQI GTAC 2 cut(s) 239, 326
DdeI CTNAG 3 cut(s) 609, 744, 976
DpnI GATC 3 cut(s) 17, 108, 1103
DpnII GATC 3 cut(s) 15, 106, 1101
DriI GACNNNNNGTC 1 cut(s) 63
EaeI YGGCCR 1 cut(s) 937
Eam1105I GACNNNNNGTC 1 cut(s) 63
EciI GGCGGA 1 cut(s) 36
Ecl136II GAGCTC 1 cut(s) 951
Eco130I CCWWGG 2 cut(s) 310, 730
Eco24I GRGCYC 1 cut(s) 953
Eco32I GATATC 1 cut(s) 1044
Eco47I GGWCC 5 cut(s) 644, 707, 800, 920, 980
Eco53kI GAGCTC 1 cut(s) 951
Eco57I CTGAAG 1 cut(s) 1124
EcoICRI GAGCTC 1 cut(s) 951
EcoO109I RGGNCCY 2 cut(s) 644, 920
EcoRII CCWGG 3 cut(s) 171, 970, 1009
EcoRV GATATC 1 cut(s) 1044
EcoT14I CCWWGG 2 cut(s) 310, 730
EcoT38I GRGCYC 1 cut(s) 953
ErhI CCWWGG 2 cut(s) 310, 730
Esp3I CGTCTC 1 cut(s) 18
FaeI CATG 5 cut(s) 187, 332, 653, 734, 766
FaqI GGGAC 2 cut(s) 486, 831
FatI CATG 5 cut(s) 183, 328, 649, 730, 762
FauI CCCGC 2 cut(s) 279, 819
FauNDI CATATG 1 cut(s) 297
FbaI TGATCA 1 cut(s) 106
Fnu4HI GCNGC 2 cut(s) 350, 1112
FokI GGATG 5 cut(s) 444, 492, 540, 547, 943
FriOI GRGCYC 1 cut(s) 953
Fsp4HI GCNGC 2 cut(s) 350, 1112
FspBI CTAG 2 cut(s) 669, 834
GlaI GCGC 2 cut(s) 534, 736
GluI GCNGC 2 cut(s) 350, 1112
GsaI CCCAGC 2 cut(s) 466, 568
GsuI CTGGAG 1 cut(s) 1032
HaeIII GGCC 3 cut(s) 939, 1009, 1020
HapII CCGG 5 cut(s) 38, 51, 542, 795, 983
HgaI GACGC 1 cut(s) 455
HhaI GCGC 2 cut(s) 535, 737
Hin1II CATG 5 cut(s) 187, 332, 653, 734, 766
Hin6I GCGC 2 cut(s) 533, 735
HinP1I GCGC 2 cut(s) 533, 735
HinfI GANTC 6 cut(s) 133, 139, 214, 364, 481, 1153
HpaII CCGG 5 cut(s) 38, 51, 542, 795, 983
Hpy166II GTNNAC 3 cut(s) 35, 326, 800
Hpy188I TCNGA 8 cut(s) 138, 144, 191, 219, 480, 903, 946, 1160
Hpy188III TCNNGA 3 cut(s) 587, 669, 911
Hpy8I GTNNAC 3 cut(s) 35, 326, 800
HpyAV CCTTC 5 cut(s) 154, 423, 933, 1054, 1148
HpyCH4III ACNGT 3 cut(s) 513, 666, 1164
HpyCH4IV ACGT 2 cut(s) 98, 285
HpyCH4V TGCA 6 cut(s) 349, 425, 616, 631, 1037, 1049
HpyF10VI GCNNNNNNNGC 6 cut(s) 47, 431, 463, 820, 829, 838
HpyF3I CTNAG 3 cut(s) 609, 744, 976
HpySE526I ACGT 2 cut(s) 98, 285
Hsp92II CATG 5 cut(s) 187, 332, 653, 734, 766
HspAI GCGC 2 cut(s) 533, 735
Ksp22I TGATCA 1 cut(s) 106
Kzo9I GATC 3 cut(s) 15, 106, 1101
Lsp1109I GCAGC 2 cut(s) 361, 1098
LweI GCATC 3 cut(s) 336, 466, 757
MaeI CTAG 2 cut(s) 669, 834
MaeII ACGT 2 cut(s) 98, 285
MaeIII GTNAC 2 cut(s) 211, 490
MalI GATC 3 cut(s) 17, 108, 1103
MboI GATC 3 cut(s) 15, 106, 1101
MboII GAAGA 3 cut(s) 106, 294, 507
MhlI GDGCHC 2 cut(s) 436, 953
MlsI TGGCCA 1 cut(s) 939
MluCI AATT 2 cut(s) 806, 890
MluNI TGGCCA 1 cut(s) 939
MlyI GAGTC 1 cut(s) 208
MmeI TCCRAC 1 cut(s) 581
Mox20I TGGCCA 1 cut(s) 939
MscI TGGCCA 1 cut(s) 939
MslI CAYNNNNRTG 3 cut(s) 497, 636, 687
Msp20I TGGCCA 1 cut(s) 939
MspI CCGG 5 cut(s) 38, 51, 542, 795, 983
MspR9I CCNGG 3 cut(s) 173, 972, 1011
MvaI CCWGG 3 cut(s) 173, 972, 1011
MvnI CGCG 1 cut(s) 533
MwoI GCNNNNNNNGC 6 cut(s) 47, 431, 463, 820, 829, 838
NcoI CCATGG 1 cut(s) 730
NdeI CATATG 1 cut(s) 297
NdeII GATC 3 cut(s) 15, 106, 1101
NlaIII CATG 5 cut(s) 187, 332, 653, 734, 766
NlaIV GGNNCC 2 cut(s) 146, 987
NmuCI GTSAC 2 cut(s) 211, 490
NspV TTCGAA 1 cut(s) 367
OliI CACNNNNGTG 1 cut(s) 636
PfeI GAWTC 5 cut(s) 133, 139, 364, 481, 1153
PflMI CCANNNNNTGG 1 cut(s) 716
PinAI ACCGGT 1 cut(s) 982
PkrI GCNGC 2 cut(s) 351, 1113
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
PpuMI RGGWCCY 2 cut(s) 644, 920
PshAI GACNNNNGTC 1 cut(s) 918
Psp124BI GAGCTC 1 cut(s) 953
Psp1406I AACGTT 1 cut(s) 285
Psp5II RGGWCCY 2 cut(s) 644, 920
Psp6I CCWGG 3 cut(s) 171, 970, 1009
PspFI CCCAGC 2 cut(s) 462, 564
PspGI CCWGG 3 cut(s) 171, 970, 1009
PspN4I GGNNCC 2 cut(s) 146, 987
PspPI GGNCC 7 cut(s) 644, 707, 800, 920, 980, 1007, 1019
PspPPI RGGWCCY 2 cut(s) 644, 920
PstI CTGCAG 1 cut(s) 1051
RsaI GTAC 2 cut(s) 240, 327
RsaNI GTAC 2 cut(s) 239, 326
RseI CAYNNNNRTG 3 cut(s) 497, 636, 687
SacI GAGCTC 1 cut(s) 953
SatI GCNGC 2 cut(s) 350, 1112
Sau3AI GATC 3 cut(s) 15, 106, 1101
Sau96I GGNCC 7 cut(s) 644, 707, 800, 920, 980, 1007, 1019
SchI GAGTC 1 cut(s) 208
ScrFI CCNGG 3 cut(s) 173, 972, 1011
SduI GDGCHC 2 cut(s) 436, 953
SfaNI GCATC 3 cut(s) 336, 466, 757
SfcI CTRYAG 1 cut(s) 1047
SfuI TTCGAA 1 cut(s) 367
SinI GGWCC 5 cut(s) 644, 707, 800, 920, 980
SmiMI CAYNNNNRTG 3 cut(s) 497, 636, 687
SmlI CTYRAG 3 cut(s) 207, 519, 909
SmoI CTYRAG 3 cut(s) 207, 519, 909
Sse9I AATT 2 cut(s) 806, 890
SsiI CCGC 6 cut(s) 5, 21, 272, 315, 410, 812
SspMI CTAG 2 cut(s) 669, 834
SstI GAGCTC 1 cut(s) 953
StyD4I CCNGG 3 cut(s) 171, 970, 1009
StyI CCWWGG 2 cut(s) 310, 730
TaaI ACNGT 3 cut(s) 513, 666, 1164
TaiI ACGT 2 cut(s) 101, 288
TaqI TCGA 2 cut(s) 367, 953
TasI AATT 2 cut(s) 806, 890
TatI WGTACW 2 cut(s) 238, 325
TfiI GAWTC 5 cut(s) 133, 139, 364, 481, 1153
TscAI CASTG 2 cut(s) 328, 721
TseFI GTSAC 2 cut(s) 211, 490
TseI GCWGC 2 cut(s) 349, 1111
Tsp45I GTSAC 2 cut(s) 211, 490
TspDTI ATGAA 2 cut(s) 107, 569
TspGWI ACGGA 1 cut(s) 42
TspRI CASTG 2 cut(s) 328, 721
Van91I CCANNNNNTGG 1 cut(s) 716
VpaK11BI GGWCC 5 cut(s) 644, 707, 800, 920, 980
XbaI TCTAGA 1 cut(s) 668
XcmI CCANNNNNNNNNTGG 1 cut(s) 1007
XspI CTAG 2 cut(s) 669, 834
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.