RchiOBHm_Chr7g0185491

Transcription termination and cleavage factor C-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0010390
Physical Location & Seq
Forward (+)
5616327 .. 5619271
2945 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16554

Sequence Viewer

Length: 1146 bp
ATGGCGGGAAAGCAAATCTCCGGCGACGGCCTACCGGCGAATATAGCCGGAATGTCGAAGAACCAGCTCTACGAAATCATGTCTCAAATGAAGAGTCTGATAGAACAGAACCAGCAGCAAGCGAGGCAGATCCTCATACAGAATCCGCTTCTCACCAAAGCGCTTTTCCAGGCACAAATTATGCTTGGAATGGTCCGGCCACCTCAATCGATTCCCACCATTCAGCCAGTGACGTCGCAGCATTCACAGCAGTCGGTGCAACCAACTCAGCAGTCTAATGCTCTGGCAGCTCCCTCATTGCCTGGCCTTGGTGTTCAGGATCAACCAGGTCCATCCCAGATCCAAGCTCCTGCAAGAAAGCAATACCAAAACCAATCTACAGTGCCTAGCTCGTCGGCTGGTCCTCCTGCGTTTAATCTTCAGTCTCAGCCTATGCCTTCATATCCCCTGCAGACCCAGCAGCAGCCTAAGGGACATCTGAATCCCCAAATGACTCCAGTATCTCTTCCACAATCCTCTCAACTTCCAAATCCTCCAACACACCCTCATCATTCTTCACAGCCACCTCAACTTCATCAAACCCAAATGGCTTCTTACAACCAGTTGCAACAGCCATTACAGACAAGTGGAGGTCATCATATGCCCCTGCAACCACCATTGCCACCACAACCAAGACCTTCAATGCCTAACTACCACCATCAGTATCCCCCACAAATGGGGCCCAATTCGGGTTTCCAACATCCTTCACAATCCATGTTTCATTCAAGTACGAAACCCCCTACTAGTGTTGGGCCTTCATTTCCCCTGGGACAGCCACCACTTCCAAGTCACCCACCACCTCAATCCATGTATCAGGGAGGAGGTATGCATTTGGGTTCAGAGTACAGCAATCAAGTTGGAACTTCTATGCAAGCAGATAGAGGATCTTGGATGTCTGGCCCGCCAGAGAGTTCGTCAGTGCCACAGCTTTCAGGACCACCATCATTAGTTCCTGGTCAAATGCCTGGTCGTGGCACAGCGTTAACCCCTGATGAGGAGAAGGCACTGCTTCAACAAGTGATGATTCTTACCCCAGAACAAATTAATCTCCTGCCTCCAGAACAGAAAAAACAAGTGCTACAGCTACAGCAGATAATGCGCCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CSTF2_hinge CSTF_C

Protein Analysis

381

Amino Acids

41.31

Weight (kDa)

9.45

Isoelectric Point (pI)

87.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CSTF2_hinge PF14327 13 - 67 9.6e-17 Hinge domain of cleavage stimulation factor subunit 2
CSTF_C PF14304 346 - 380 4.4e-08 Transcription termination and cleavage factor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 236
AciI CCGC 3 cut(s) 5, 146, 941
AclWI GGATC 4 cut(s) 124, 327, 334, 931
AcoI YGGCCR 1 cut(s) 197
AcuI CTGAAG 1 cut(s) 404
AcyI GRCGYC 1 cut(s) 233
AfaI GTAC 2 cut(s) 769, 884
AfeI AGCGCT 1 cut(s) 162
AfiI CCNNNNNNNGG 6 cut(s) 308, 715, 716, 728, 1010, 1033
AgsI TTSAA 3 cut(s) 681, 765, 1052
AhlI ACTAGT 1 cut(s) 782
AjnI CCWGG 6 cut(s) 168, 301, 325, 804, 991, 1003
AjuI GAANNNNNNNTTGG 4 cut(s) 149, 181, 716, 748
AluBI AGCT 6 cut(s) 67, 290, 347, 390, 967, 1123
AluI AGCT 6 cut(s) 67, 290, 347, 390, 967, 1123
Alw26I GTCTC 2 cut(s) 87, 429
AlwI GGATC 4 cut(s) 124, 327, 334, 931
Aor51HI AGCGCT 1 cut(s) 162
AoxI GGCC 6 cut(s) 28, 197, 304, 719, 791, 937
ApaI GGGCCC 1 cut(s) 723
ApeKI GCWGC 5 cut(s) 115, 238, 287, 460, 463
ArsI GACNNNNNNTTYG 4 cut(s) 79, 111, 991, 1023
AseI ATTAAT 1 cut(s) 1083
AspLEI GCGC 2 cut(s) 163, 1140
AspS9I GGNCC 8 cut(s) 193, 329, 401, 719, 720, 791, 938, 974
AsuHPI GGTGA 2 cut(s) 145, 821
AvaII GGWCC 4 cut(s) 193, 329, 401, 974
AxyI CCTNAGG 1 cut(s) 468
BaeGI GKGCMC 1 cut(s) 723
BaeI ACNNNNGTAYC 2 cut(s) 483, 516
BanII GRGCYC 1 cut(s) 723
BbvI GCAGC 5 cut(s) 127, 250, 299, 472, 475
BccI CCATC 3 cut(s) 340, 705, 988
BceAI ACGGC 1 cut(s) 43
BciT130I CCWGG 6 cut(s) 170, 303, 327, 806, 993, 1005
BciVI GTATCC 1 cut(s) 714
BcoDI GTCTC 2 cut(s) 87, 429
BcuI ACTAGT 1 cut(s) 782
BfaI CTAG 2 cut(s) 387, 783
BfmI CTRYAG 4 cut(s) 378, 449, 1118, 1124
BfoI RGCGCY 1 cut(s) 164
BfuI GTATCC 1 cut(s) 714
BisI GCNGC 5 cut(s) 116, 239, 288, 461, 464
BlsI GCNGC 5 cut(s) 117, 240, 289, 462, 465
Bme1390I CCNGG 6 cut(s) 170, 303, 327, 806, 993, 1005
Bme18I GGWCC 4 cut(s) 193, 329, 401, 974
BmgT120I GGNCC 8 cut(s) 193, 329, 401, 719, 720, 791, 938, 974
BmiI GGNNCC 2 cut(s) 720, 721
BmrFI CCNGG 6 cut(s) 170, 303, 327, 806, 993, 1005
BpmI CTGGAG 2 cut(s) 480, 1080
Bsa29I ATCGAT 1 cut(s) 209
BsaHI GRCGYC 1 cut(s) 233
BsaJI CCNNGG 3 cut(s) 307, 804, 805
Bsc4I CCNNNNNNNGG 6 cut(s) 308, 715, 716, 728, 1010, 1033
Bse118I RCCGGY 1 cut(s) 34
Bse1I ACTGG 3 cut(s) 227, 497, 601
Bse21I CCTNAGG 1 cut(s) 468
Bse3DI GCAATG 2 cut(s) 296, 656
BseBI CCWGG 6 cut(s) 170, 303, 327, 806, 993, 1005
BseCI ATCGAT 1 cut(s) 209
BseDI CCNNGG 3 cut(s) 307, 804, 805
BseGI GGATG 3 cut(s) 332, 739, 936
BseLI CCNNNNNNNGG 6 cut(s) 308, 715, 716, 728, 1010, 1033
BseMI GCAATG 2 cut(s) 296, 656
BseMII CTCAG 2 cut(s) 281, 440
BseNI ACTGG 3 cut(s) 227, 497, 601
BseRI GAGGAG 2 cut(s) 873, 1049
BseSI GKGCMC 1 cut(s) 723
BseXI GCAGC 5 cut(s) 127, 250, 299, 472, 475
BseYI CCCAGC 1 cut(s) 456
BshFI GGCC 6 cut(s) 30, 199, 306, 721, 793, 939
BshVI ATCGAT 1 cut(s) 209
BsiSI CCGG 4 cut(s) 21, 35, 48, 196
BslFI GGGAC 2 cut(s) 486, 822
BslI CCNNNNNNNGG 6 cut(s) 308, 715, 716, 728, 1010, 1033
BsmAI GTCTC 2 cut(s) 87, 429
BsmFI GGGAC 2 cut(s) 486, 822
BsmI GAATGC 1 cut(s) 241
BsnI GGCC 6 cut(s) 30, 199, 306, 721, 793, 939
Bsp120I GGGCCC 1 cut(s) 719
Bsp1286I GDGCHC 1 cut(s) 723
Bsp143I GATC 4 cut(s) 129, 319, 339, 923
BspACI CCGC 3 cut(s) 5, 146, 941
BspANI GGCC 6 cut(s) 30, 199, 306, 721, 793, 939
BspCNI CTCAG 2 cut(s) 280, 439
BspDI ATCGAT 1 cut(s) 209
BspLI GGNNCC 2 cut(s) 720, 721
BspMAI CTGCAG 1 cut(s) 453
BspPI GGATC 4 cut(s) 124, 327, 334, 931
BsrDI GCAATG 2 cut(s) 296, 656
BsrFI RCCGGY 1 cut(s) 34
BsrI ACTGG 3 cut(s) 227, 497, 601
BssAI RCCGGY 1 cut(s) 34
BssECI CCNNGG 3 cut(s) 307, 804, 805
BssMI GATC 4 cut(s) 129, 319, 339, 923
BssNI GRCGYC 1 cut(s) 233
BssT1I CCWWGG 1 cut(s) 307
Bst2UI CCWGG 6 cut(s) 170, 303, 327, 806, 993, 1005
Bst4CI ACNGT 1 cut(s) 382
Bst6I CTCTTC 2 cut(s) 86, 510
BstACI GRCGYC 1 cut(s) 233
BstAPI GCANNNNNTGC 2 cut(s) 256, 1135
BstC8I GCNNGC 3 cut(s) 120, 912, 941
BstDEI CTNAG 3 cut(s) 267, 426, 468
BstF5I GGATG 3 cut(s) 332, 739, 936
BstH2I RGCGCY 1 cut(s) 164
BstHHI GCGC 2 cut(s) 163, 1140
BstKTI GATC 4 cut(s) 132, 322, 342, 926
BstMAI GTCTC 2 cut(s) 87, 429
BstMBI GATC 4 cut(s) 129, 319, 339, 923
BstMWI GCNNNNNNNGC 7 cut(s) 44, 124, 247, 256, 287, 457, 1135
BstNI CCWGG 6 cut(s) 170, 303, 327, 806, 993, 1005
BstSCI CCNGG 6 cut(s) 168, 301, 325, 804, 991, 1003
BstSFI CTRYAG 4 cut(s) 378, 449, 1118, 1124
BstSLI GKGCMC 1 cut(s) 723
BstV1I GCAGC 5 cut(s) 127, 250, 299, 472, 475
BstX2I RGATCY 3 cut(s) 129, 339, 923
BstYI RGATCY 3 cut(s) 129, 339, 923
Bsu15I ATCGAT 1 cut(s) 209
Bsu36I CCTNAGG 1 cut(s) 468
BsuI GTATCC 1 cut(s) 714
BsuRI GGCC 6 cut(s) 30, 199, 306, 721, 793, 939
BsuTUI ATCGAT 1 cut(s) 209
BtsCI GGATG 3 cut(s) 332, 739, 936
BtsI GCAGTG 1 cut(s) 1043
BtsIMutI CAGTG 4 cut(s) 234, 387, 963, 1043
Cac8I GCNNGC 3 cut(s) 120, 912, 941
CfoI GCGC 2 cut(s) 163, 1140
Cfr10I RCCGGY 1 cut(s) 34
Cfr13I GGNCC 8 cut(s) 193, 329, 401, 719, 720, 791, 938, 974
ClaI ATCGAT 1 cut(s) 209
CsiI ACCWGGT 1 cut(s) 325
Csp6I GTAC 2 cut(s) 768, 883
CviAII CATG 3 cut(s) 79, 754, 847
CviQI GTAC 2 cut(s) 768, 883
DdeI CTNAG 3 cut(s) 267, 426, 468
DpnI GATC 4 cut(s) 131, 321, 341, 925
DpnII GATC 4 cut(s) 129, 319, 339, 923
EaeI YGGCCR 1 cut(s) 197
Eam1104I CTCTTC 2 cut(s) 86, 510
EarI CTCTTC 2 cut(s) 86, 510
Eco130I CCWWGG 1 cut(s) 307
Eco24I GRGCYC 1 cut(s) 723
Eco47I GGWCC 4 cut(s) 193, 329, 401, 974
Eco47III AGCGCT 1 cut(s) 162
Eco57I CTGAAG 1 cut(s) 404
Eco81I CCTNAGG 1 cut(s) 468
EcoO109I RGGNCCY 1 cut(s) 719
EcoRII CCWGG 6 cut(s) 168, 301, 325, 804, 991, 1003
EcoT14I CCWWGG 1 cut(s) 307
EcoT22I ATGCAT 1 cut(s) 870
EcoT38I GRGCYC 1 cut(s) 723
ErhI CCWWGG 1 cut(s) 307
FaeI CATG 3 cut(s) 82, 757, 850
FaqI GGGAC 2 cut(s) 486, 822
FatI CATG 3 cut(s) 78, 753, 846
FauI CCCGC 1 cut(s) 948
FauNDI CATATG 1 cut(s) 639
Fnu4HI GCNGC 5 cut(s) 116, 239, 288, 461, 464
FokI GGATG 3 cut(s) 319, 726, 943
FriOI GRGCYC 1 cut(s) 723
Fsp4HI GCNGC 5 cut(s) 116, 239, 288, 461, 464
FspBI CTAG 2 cut(s) 387, 783
GlaI GCGC 2 cut(s) 162, 1139
GluI GCNGC 5 cut(s) 116, 239, 288, 461, 464
GsaI CCCAGC 1 cut(s) 460
GsuI CTGGAG 2 cut(s) 480, 1080
HaeII RGCGCY 1 cut(s) 164
HaeIII GGCC 6 cut(s) 30, 199, 306, 721, 793, 939
HapII CCGG 4 cut(s) 21, 35, 48, 196
HhaI GCGC 2 cut(s) 163, 1140
Hin1I GRCGYC 1 cut(s) 233
Hin1II CATG 3 cut(s) 82, 757, 850
Hin6I GCGC 2 cut(s) 161, 1138
HinP1I GCGC 2 cut(s) 161, 1138
HincII GTYRAC 1 cut(s) 1023
HindII GTYRAC 1 cut(s) 1023
HinfI GANTC 6 cut(s) 94, 142, 211, 481, 493, 1063
HpaI GTTAAC 1 cut(s) 1023
HpaII CCGG 4 cut(s) 21, 35, 48, 196
HphI GGTGA 2 cut(s) 145, 821
Hpy166II GTNNAC 1 cut(s) 1023
Hpy188I TCNGA 3 cut(s) 99, 480, 880
Hpy188III TCNNGA 3 cut(s) 317, 972, 1097
Hpy8I GTNNAC 1 cut(s) 1023
Hpy99I CGWCG 3 cut(s) 29, 238, 397
HpyAV CCTTC 5 cut(s) 447, 687, 753, 804, 1033
HpyCH4III ACNGT 1 cut(s) 382
HpyCH4IV ACGT 1 cut(s) 233
HpyCH4V TGCA 7 cut(s) 259, 353, 451, 607, 649, 868, 910
HpyF10VI GCNNNNNNNGC 7 cut(s) 44, 124, 247, 256, 287, 457, 1135
HpyF3I CTNAG 3 cut(s) 267, 426, 468
HpySE526I ACGT 1 cut(s) 233
Hsp92I GRCGYC 1 cut(s) 233
Hsp92II CATG 3 cut(s) 82, 757, 850
HspAI GCGC 2 cut(s) 161, 1138
KspAI GTTAAC 1 cut(s) 1023
Kzo9I GATC 4 cut(s) 129, 319, 339, 923
LmnI GCTCC 2 cut(s) 295, 352
Lsp1109I GCAGC 5 cut(s) 127, 250, 299, 472, 475
MabI ACCWGGT 1 cut(s) 325
MaeI CTAG 2 cut(s) 387, 783
MaeII ACGT 1 cut(s) 233
MaeIII GTNAC 2 cut(s) 229, 827
MalI GATC 4 cut(s) 131, 321, 341, 925
MboI GATC 4 cut(s) 129, 319, 339, 923
MboII GAAGA 5 cut(s) 70, 103, 410, 497, 546
MflI RGATCY 3 cut(s) 129, 339, 923
MhlI GDGCHC 1 cut(s) 723
MluCI AATT 3 cut(s) 177, 724, 1080
MlyI GAGTC 2 cut(s) 103, 487
MmeI TCCRAC 3 cut(s) 560, 760, 877
Mph1103I ATGCAT 1 cut(s) 870
MseI TTAA 3 cut(s) 414, 1022, 1083
MspI CCGG 4 cut(s) 21, 35, 48, 196
MspR9I CCNGG 6 cut(s) 170, 303, 327, 806, 993, 1005
Mva1269I GAATGC 1 cut(s) 241
MvaI CCWGG 6 cut(s) 170, 303, 327, 806, 993, 1005
MwoI GCNNNNNNNGC 7 cut(s) 44, 124, 247, 256, 287, 457, 1135
NdeI CATATG 1 cut(s) 639
NdeII GATC 4 cut(s) 129, 319, 339, 923
NlaIII CATG 3 cut(s) 82, 757, 850
NlaIV GGNNCC 2 cut(s) 720, 721
NmuCI GTSAC 2 cut(s) 229, 827
NsiI ATGCAT 1 cut(s) 870
PasI CCCWGGG 1 cut(s) 805
PctI GAATGC 1 cut(s) 241
PfeI GAWTC 4 cut(s) 142, 211, 481, 1063
PkrI GCNGC 5 cut(s) 117, 240, 289, 462, 465
PleI GAGTC 2 cut(s) 102, 487
PpsI GAGTC 2 cut(s) 102, 487
PshBI ATTAAT 1 cut(s) 1083
Psp6I CCWGG 6 cut(s) 168, 301, 325, 804, 991, 1003
PspFI CCCAGC 1 cut(s) 456
PspGI CCWGG 6 cut(s) 168, 301, 325, 804, 991, 1003
PspN4I GGNNCC 2 cut(s) 720, 721
PspOMI GGGCCC 1 cut(s) 719
PspPI GGNCC 8 cut(s) 193, 329, 401, 719, 720, 791, 938, 974
PsrI GAACNNNNNNTAC 2 cut(s) 53, 85
PstI CTGCAG 1 cut(s) 453
PsuI RGATCY 3 cut(s) 129, 339, 923
RsaI GTAC 2 cut(s) 769, 884
RsaNI GTAC 2 cut(s) 768, 883
SaqAI TTAA 3 cut(s) 414, 1022, 1083
SatI GCNGC 5 cut(s) 116, 239, 288, 461, 464
Sau3AI GATC 4 cut(s) 129, 319, 339, 923
Sau96I GGNCC 8 cut(s) 193, 329, 401, 719, 720, 791, 938, 974
SchI GAGTC 2 cut(s) 103, 487
ScrFI CCNGG 6 cut(s) 170, 303, 327, 806, 993, 1005
SduI GDGCHC 1 cut(s) 723
SexAI ACCWGGT 1 cut(s) 325
SfcI CTRYAG 4 cut(s) 378, 449, 1118, 1124
SinI GGWCC 4 cut(s) 193, 329, 401, 974
SpeI ACTAGT 1 cut(s) 782
Sse9I AATT 3 cut(s) 177, 724, 1080
SsiI CCGC 3 cut(s) 5, 146, 941
SspMI CTAG 2 cut(s) 387, 783
StyD4I CCNGG 6 cut(s) 168, 301, 325, 804, 991, 1003
StyI CCWWGG 1 cut(s) 307
TaaI ACNGT 1 cut(s) 382
TaiI ACGT 1 cut(s) 236
TaqI TCGA 2 cut(s) 56, 209
TasI AATT 3 cut(s) 177, 724, 1080
TatI WGTACW 1 cut(s) 882
TfiI GAWTC 4 cut(s) 142, 211, 481, 1063
Tru1I TTAA 3 cut(s) 414, 1022, 1083
Tru9I TTAA 3 cut(s) 414, 1022, 1083
TscAI CASTG 4 cut(s) 234, 387, 963, 1050
TseFI GTSAC 2 cut(s) 229, 827
TseI GCWGC 5 cut(s) 115, 238, 287, 460, 463
Tsp45I GTSAC 2 cut(s) 229, 827
TspDTI ATGAA 5 cut(s) 104, 429, 563, 749, 786
TspRI CASTG 4 cut(s) 234, 387, 963, 1050
VpaK11BI GGWCC 4 cut(s) 193, 329, 401, 974
VspI ATTAAT 1 cut(s) 1083
XspI CTAG 2 cut(s) 387, 783
ZraI GACGTC 1 cut(s) 234
Zsp2I ATGCAT 1 cut(s) 870
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.