Rh7BG074600

Transcription termination and cleavage factor C-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0010390
Physical Location & Seq
Forward (+)
5078459 .. 5081264
2806 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG074600.1

Sequence Viewer

Length: 969 bp
ATGCTTGGAATGGTCCGGCCACCTCAATCGATTCCCACCATTCAGCCAGTGACGTCGCAGCATTCGGTGCAACCAACTCAGCAGTCTAACGCTCTGGCAGCTCCCTCATTGCCAGGCCTTGGTGTTCAGGACCAACCAGGTCCATCCCAGATCCAAGCTCCTGCAAGAAAGCAATACCAAAACCAATCTACAGTGCCTAGCTCGTCGGCTGCTCCTCCCGCGTTTAATCTTCAGTCTCAGCCTATGCCTTCATATCCCCTGCAGACCCAGCAGCAGCCTAAGGGACATCTGAATCCCCAAATGACCCCGGCATCTCTTCCACAATCCTCTCAACTTCCAAATCCTCCAACACACCCTCATCATTCTTCACAGCCACCTCAACTTCATCAACCCCAAATGGCTTCTTACAACCAGTTGCAACAGCCATTACAGACGAGTGGAGGTCATCATATGCCCCTGCAACCACCATTGCCACCACAACCAAGACCTTCAATGCCTAACTACCACCATCAGTATCCCCCACAAATGGGGCCCAATTCGGGTTTCCAACATCCTTCACAATCCATGTTTCATTCAGGTACGAAACCCCCTACTAGTGTTGGGCCTTCATTTCCCCTGGGACAGCCACCACTTCCAAGTCACCCACCACCTCAATCCATGTATCAGGGAGGAGGTATGCATTTGGGTTCGGAGTACAGCAATCAAGTTGGAACTTCTATGCAAGCAGATAGAGGATCTTGGATGTCTGGGCCGCCAGAGAGTTCGTCAGTGCCACAGCTTTCAGGACCACCATCATTAGTTCCTGGTCAAATGCCTGGCAGCCAGCCTGGTCGTGGCACAGCGTTAACCCCTGAGGAGGAGAAGGCGCTGCTTCAACAAGTGATGATTCTTACCCCAGAACAAATTAATCTCCTGCCTCCAGAACAGAAAAAACAAGTGCTACAGCTACAGCAGATAATGCGCCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CSTF2_hinge CSTF_C

Protein Analysis

322

Amino Acids

34.68

Weight (kDa)

9.26

Isoelectric Point (pI)

92.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CSTF_C PF14304 286 - 321 4.2e-08 Transcription termination and cleavage factor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 56
AccB7I CCANNNNNTGG 1 cut(s) 119
AccII CGCG 1 cut(s) 221
AciI CCGC 2 cut(s) 219, 752
AclWI GGATC 2 cut(s) 145, 742
AcoI YGGCCR 1 cut(s) 17
AcuI CTGAAG 1 cut(s) 215
AcyI GRCGYC 1 cut(s) 53
AfaI GTAC 2 cut(s) 580, 695
AfiI CCNNNNNNNGG 6 cut(s) 119, 526, 527, 539, 833, 856
AgsI TTSAA 2 cut(s) 492, 875
AhlI ACTAGT 1 cut(s) 593
AjnI CCWGG 6 cut(s) 112, 136, 615, 802, 814, 826
AjuI GAANNNNNNNTTGG 2 cut(s) 527, 559
AluBI AGCT 5 cut(s) 101, 158, 201, 778, 946
AluI AGCT 5 cut(s) 101, 158, 201, 778, 946
Alw26I GTCTC 1 cut(s) 240
AlwI GGATC 2 cut(s) 145, 742
AoxI GGCC 5 cut(s) 17, 115, 530, 602, 749
ApaI GGGCCC 1 cut(s) 534
ApeKI GCWGC 7 cut(s) 58, 98, 209, 271, 274, 819, 868
AseI ATTAAT 1 cut(s) 906
AspLEI GCGC 2 cut(s) 868, 963
AspS9I GGNCC 8 cut(s) 13, 130, 140, 530, 531, 602, 749, 785
AsuC2I CCSGG 1 cut(s) 308
AsuHPI GGTGA 1 cut(s) 632
AvaII GGWCC 4 cut(s) 13, 130, 140, 785
AxyI CCTNAGG 2 cut(s) 279, 852
BaeGI GKGCMC 1 cut(s) 534
BanII GRGCYC 1 cut(s) 534
BbvI GCAGC 7 cut(s) 70, 110, 196, 283, 286, 831, 855
BccI CCATC 3 cut(s) 151, 516, 799
BciT130I CCWGG 6 cut(s) 114, 138, 617, 804, 816, 828
BciVI GTATCC 1 cut(s) 525
BcnI CCSGG 1 cut(s) 308
BcoDI GTCTC 1 cut(s) 240
BcuI ACTAGT 1 cut(s) 593
BfaI CTAG 2 cut(s) 198, 594
BfmI CTRYAG 4 cut(s) 189, 260, 941, 947
BfoI RGCGCY 1 cut(s) 869
BfuI GTATCC 1 cut(s) 525
BisI GCNGC 8 cut(s) 59, 99, 210, 272, 275, 752, 820, 869
BlsI GCNGC 8 cut(s) 60, 100, 211, 273, 276, 753, 821, 870
Bme1390I CCNGG 7 cut(s) 114, 138, 308, 617, 804, 816, 828
Bme18I GGWCC 4 cut(s) 13, 130, 140, 785
BmgT120I GGNCC 8 cut(s) 13, 130, 140, 530, 531, 602, 749, 785
BmiI GGNNCC 2 cut(s) 531, 532
BmrFI CCNGG 7 cut(s) 114, 138, 308, 617, 804, 816, 828
BmsI GCATC 1 cut(s) 320
BpmI CTGGAG 1 cut(s) 903
BpuMI CCSGG 1 cut(s) 308
Bsa29I ATCGAT 1 cut(s) 29
BsaHI GRCGYC 1 cut(s) 53
BsaJI CCNNGG 4 cut(s) 118, 306, 615, 616
Bsc4I CCNNNNNNNGG 6 cut(s) 119, 526, 527, 539, 833, 856
Bse1I ACTGG 2 cut(s) 47, 412
Bse21I CCTNAGG 2 cut(s) 279, 852
Bse3DI GCAATG 2 cut(s) 107, 467
BseBI CCWGG 6 cut(s) 114, 138, 617, 804, 816, 828
BseCI ATCGAT 1 cut(s) 29
BseDI CCNNGG 4 cut(s) 118, 306, 615, 616
BseGI GGATG 3 cut(s) 143, 550, 747
BseLI CCNNNNNNNGG 6 cut(s) 119, 526, 527, 539, 833, 856
BseMI GCAATG 2 cut(s) 107, 467
BseMII CTCAG 3 cut(s) 92, 251, 843
BseNI ACTGG 2 cut(s) 47, 412
BseRI GAGGAG 4 cut(s) 204, 684, 869, 872
BseSI GKGCMC 1 cut(s) 534
BseXI GCAGC 7 cut(s) 70, 110, 196, 283, 286, 831, 855
BseYI CCCAGC 1 cut(s) 267
Bsh1236I CGCG 1 cut(s) 221
BshFI GGCC 5 cut(s) 19, 117, 532, 604, 751
BshVI ATCGAT 1 cut(s) 29
BsiSI CCGG 2 cut(s) 16, 308
BslFI GGGAC 2 cut(s) 297, 633
BslI CCNNNNNNNGG 6 cut(s) 119, 526, 527, 539, 833, 856
BsmAI GTCTC 1 cut(s) 240
BsmFI GGGAC 2 cut(s) 297, 633
BsmI GAATGC 1 cut(s) 61
BsnI GGCC 5 cut(s) 19, 117, 532, 604, 751
Bsp120I GGGCCC 1 cut(s) 530
Bsp1286I GDGCHC 1 cut(s) 534
Bsp143I GATC 2 cut(s) 150, 734
BspACI CCGC 2 cut(s) 219, 752
BspANI GGCC 5 cut(s) 19, 117, 532, 604, 751
BspCNI CTCAG 3 cut(s) 91, 250, 844
BspDI ATCGAT 1 cut(s) 29
BspFNI CGCG 1 cut(s) 221
BspLI GGNNCC 2 cut(s) 531, 532
BspMAI CTGCAG 1 cut(s) 264
BspPI GGATC 2 cut(s) 145, 742
BsrDI GCAATG 2 cut(s) 107, 467
BsrI ACTGG 2 cut(s) 47, 412
BssECI CCNNGG 4 cut(s) 118, 306, 615, 616
BssMI GATC 2 cut(s) 150, 734
BssNI GRCGYC 1 cut(s) 53
BssT1I CCWWGG 1 cut(s) 118
Bst2UI CCWGG 6 cut(s) 114, 138, 617, 804, 816, 828
Bst4CI ACNGT 1 cut(s) 193
Bst6I CTCTTC 1 cut(s) 321
BstACI GRCGYC 1 cut(s) 53
BstAPI GCANNNNNTGC 2 cut(s) 67, 958
BstC8I GCNNGC 2 cut(s) 723, 824
BstDEI CTNAG 4 cut(s) 78, 237, 279, 852
BstF5I GGATG 3 cut(s) 143, 550, 747
BstFNI CGCG 1 cut(s) 221
BstH2I RGCGCY 1 cut(s) 869
BstHHI GCGC 2 cut(s) 868, 963
BstKTI GATC 2 cut(s) 153, 737
BstMAI GTCTC 1 cut(s) 240
BstMBI GATC 2 cut(s) 150, 734
BstMWI GCNNNNNNNGC 5 cut(s) 67, 98, 218, 268, 958
BstNI CCWGG 6 cut(s) 114, 138, 617, 804, 816, 828
BstSCI CCNGG 7 cut(s) 112, 136, 306, 615, 802, 814, 826
BstSFI CTRYAG 4 cut(s) 189, 260, 941, 947
BstSLI GKGCMC 1 cut(s) 534
BstUI CGCG 1 cut(s) 221
BstV1I GCAGC 7 cut(s) 70, 110, 196, 283, 286, 831, 855
BstX2I RGATCY 2 cut(s) 150, 734
BstYI RGATCY 2 cut(s) 150, 734
Bsu15I ATCGAT 1 cut(s) 29
Bsu36I CCTNAGG 2 cut(s) 279, 852
BsuI GTATCC 1 cut(s) 525
BsuRI GGCC 5 cut(s) 19, 117, 532, 604, 751
BsuTUI ATCGAT 1 cut(s) 29
BtsCI GGATG 3 cut(s) 143, 550, 747
BtsIMutI CAGTG 3 cut(s) 54, 198, 774
Cac8I GCNNGC 2 cut(s) 723, 824
CfoI GCGC 2 cut(s) 868, 963
Cfr13I GGNCC 8 cut(s) 13, 130, 140, 530, 531, 602, 749, 785
ClaI ATCGAT 1 cut(s) 29
CsiI ACCWGGT 1 cut(s) 136
Csp6I GTAC 2 cut(s) 579, 694
CviAII CATG 2 cut(s) 565, 658
CviQI GTAC 2 cut(s) 579, 694
DdeI CTNAG 4 cut(s) 78, 237, 279, 852
DpnI GATC 2 cut(s) 152, 736
DpnII GATC 2 cut(s) 150, 734
EaeI YGGCCR 1 cut(s) 17
Eam1104I CTCTTC 1 cut(s) 321
EarI CTCTTC 1 cut(s) 321
Eco130I CCWWGG 1 cut(s) 118
Eco147I AGGCCT 1 cut(s) 117
Eco24I GRGCYC 1 cut(s) 534
Eco47I GGWCC 4 cut(s) 13, 130, 140, 785
Eco57I CTGAAG 1 cut(s) 215
Eco81I CCTNAGG 2 cut(s) 279, 852
EcoO109I RGGNCCY 1 cut(s) 530
EcoRII CCWGG 6 cut(s) 112, 136, 615, 802, 814, 826
EcoT14I CCWWGG 1 cut(s) 118
EcoT22I ATGCAT 1 cut(s) 681
EcoT38I GRGCYC 1 cut(s) 534
ErhI CCWWGG 1 cut(s) 118
FaeI CATG 2 cut(s) 568, 661
FaiI YATR 8 cut(s) 245, 253, 450, 452, 566, 659, 677, 719
FaqI GGGAC 2 cut(s) 297, 633
FatI CATG 2 cut(s) 564, 657
FauI CCCGC 1 cut(s) 226
FauNDI CATATG 1 cut(s) 450
Fnu4HI GCNGC 8 cut(s) 59, 99, 210, 272, 275, 752, 820, 869
FokI GGATG 3 cut(s) 130, 537, 754
FriOI GRGCYC 1 cut(s) 534
Fsp4HI GCNGC 8 cut(s) 59, 99, 210, 272, 275, 752, 820, 869
FspBI CTAG 2 cut(s) 198, 594
GlaI GCGC 2 cut(s) 867, 962
GluI GCNGC 8 cut(s) 59, 99, 210, 272, 275, 752, 820, 869
GsaI CCCAGC 1 cut(s) 271
GsuI CTGGAG 1 cut(s) 903
HaeII RGCGCY 1 cut(s) 869
HaeIII GGCC 5 cut(s) 19, 117, 532, 604, 751
HapII CCGG 2 cut(s) 16, 308
HhaI GCGC 2 cut(s) 868, 963
Hin1I GRCGYC 1 cut(s) 53
Hin1II CATG 2 cut(s) 568, 661
Hin6I GCGC 2 cut(s) 866, 961
HinP1I GCGC 2 cut(s) 866, 961
HincII GTYRAC 1 cut(s) 846
HindII GTYRAC 1 cut(s) 846
HinfI GANTC 3 cut(s) 31, 292, 886
HpaI GTTAAC 1 cut(s) 846
HpaII CCGG 2 cut(s) 16, 308
HphI GGTGA 1 cut(s) 632
Hpy166II GTNNAC 1 cut(s) 846
Hpy188I TCNGA 2 cut(s) 291, 691
Hpy188III TCNNGA 3 cut(s) 128, 783, 920
Hpy8I GTNNAC 1 cut(s) 846
Hpy99I CGWCG 2 cut(s) 58, 208
HpyAV CCTTC 5 cut(s) 258, 498, 564, 615, 856
HpyCH4III ACNGT 1 cut(s) 193
HpyCH4IV ACGT 1 cut(s) 53
HpyCH4V TGCA 7 cut(s) 70, 164, 262, 418, 460, 679, 721
HpyF10VI GCNNNNNNNGC 5 cut(s) 67, 98, 218, 268, 958
HpyF3I CTNAG 4 cut(s) 78, 237, 279, 852
HpySE526I ACGT 1 cut(s) 53
Hsp92I GRCGYC 1 cut(s) 53
Hsp92II CATG 2 cut(s) 568, 661
HspAI GCGC 2 cut(s) 866, 961
KspAI GTTAAC 1 cut(s) 846
Kzo9I GATC 2 cut(s) 150, 734
LmnI GCTCC 3 cut(s) 106, 163, 217
Lsp1109I GCAGC 7 cut(s) 70, 110, 196, 283, 286, 831, 855
LweI GCATC 1 cut(s) 320
MabI ACCWGGT 1 cut(s) 136
MaeI CTAG 2 cut(s) 198, 594
MaeII ACGT 1 cut(s) 53
MaeIII GTNAC 2 cut(s) 49, 638
MalI GATC 2 cut(s) 152, 736
MboI GATC 2 cut(s) 150, 734
MboII GAAGA 3 cut(s) 221, 308, 357
MflI RGATCY 2 cut(s) 150, 734
MhlI GDGCHC 1 cut(s) 534
MluCI AATT 2 cut(s) 535, 903
MmeI TCCRAC 3 cut(s) 371, 571, 688
Mph1103I ATGCAT 1 cut(s) 681
MseI TTAA 3 cut(s) 225, 845, 906
MspI CCGG 2 cut(s) 16, 308
MspR9I CCNGG 7 cut(s) 114, 138, 308, 617, 804, 816, 828
Mva1269I GAATGC 1 cut(s) 61
MvaI CCWGG 6 cut(s) 114, 138, 617, 804, 816, 828
MvnI CGCG 1 cut(s) 221
MwoI GCNNNNNNNGC 5 cut(s) 67, 98, 218, 268, 958
NciI CCSGG 1 cut(s) 308
NdeI CATATG 1 cut(s) 450
NdeII GATC 2 cut(s) 150, 734
NlaIII CATG 2 cut(s) 568, 661
NlaIV GGNNCC 2 cut(s) 531, 532
NmuCI GTSAC 2 cut(s) 49, 638
NsiI ATGCAT 1 cut(s) 681
PasI CCCWGGG 1 cut(s) 616
PceI AGGCCT 1 cut(s) 117
PctI GAATGC 1 cut(s) 61
PfeI GAWTC 3 cut(s) 31, 292, 886
PflMI CCANNNNNTGG 1 cut(s) 119
PkrI GCNGC 8 cut(s) 60, 100, 211, 273, 276, 753, 821, 870
PshBI ATTAAT 1 cut(s) 906
Psp6I CCWGG 6 cut(s) 112, 136, 615, 802, 814, 826
PspFI CCCAGC 1 cut(s) 267
PspGI CCWGG 6 cut(s) 112, 136, 615, 802, 814, 826
PspN4I GGNNCC 2 cut(s) 531, 532
PspOMI GGGCCC 1 cut(s) 530
PspPI GGNCC 8 cut(s) 13, 130, 140, 530, 531, 602, 749, 785
PstI CTGCAG 1 cut(s) 264
PsuI RGATCY 2 cut(s) 150, 734
RsaI GTAC 2 cut(s) 580, 695
RsaNI GTAC 2 cut(s) 579, 694
SaqAI TTAA 3 cut(s) 225, 845, 906
SatI GCNGC 8 cut(s) 59, 99, 210, 272, 275, 752, 820, 869
Sau3AI GATC 2 cut(s) 150, 734
Sau96I GGNCC 8 cut(s) 13, 130, 140, 530, 531, 602, 749, 785
ScrFI CCNGG 7 cut(s) 114, 138, 308, 617, 804, 816, 828
SduI GDGCHC 1 cut(s) 534
SexAI ACCWGGT 1 cut(s) 136
SfaNI GCATC 1 cut(s) 320
SfcI CTRYAG 4 cut(s) 189, 260, 941, 947
SinI GGWCC 4 cut(s) 13, 130, 140, 785
SpeI ACTAGT 1 cut(s) 593
Sse9I AATT 2 cut(s) 535, 903
SseBI AGGCCT 1 cut(s) 117
SsiI CCGC 2 cut(s) 219, 752
SspMI CTAG 2 cut(s) 198, 594
StuI AGGCCT 1 cut(s) 117
StyD4I CCNGG 7 cut(s) 112, 136, 306, 615, 802, 814, 826
StyI CCWWGG 1 cut(s) 118
TaaI ACNGT 1 cut(s) 193
TaiI ACGT 1 cut(s) 56
TaqI TCGA 1 cut(s) 29
TasI AATT 2 cut(s) 535, 903
TatI WGTACW 1 cut(s) 693
TauI GCSGC 1 cut(s) 754
TfiI GAWTC 3 cut(s) 31, 292, 886
Tru1I TTAA 3 cut(s) 225, 845, 906
Tru9I TTAA 3 cut(s) 225, 845, 906
TscAI CASTG 3 cut(s) 54, 198, 774
TseFI GTSAC 2 cut(s) 49, 638
TseI GCWGC 7 cut(s) 58, 98, 209, 271, 274, 819, 868
Tsp45I GTSAC 2 cut(s) 49, 638
TspDTI ATGAA 4 cut(s) 240, 374, 560, 597
TspRI CASTG 3 cut(s) 54, 198, 774
Van91I CCANNNNNTGG 1 cut(s) 119
VpaK11BI GGWCC 4 cut(s) 13, 130, 140, 785
VspI ATTAAT 1 cut(s) 906
XcmI CCANNNNNNNNNTGG 1 cut(s) 830
XspI CTAG 2 cut(s) 198, 594
ZraI GACGTC 1 cut(s) 54
Zsp2I ATGCAT 1 cut(s) 681
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.