Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0010390

Physical Location & Seq

Genomic Coordinates Forward (+)

17245355 .. 17248430

Gene Structure 3076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G221700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGCGGGAAAGCAACTCGCCGGCGACAGTCTACCTGCGGATTTCGCCGGAATGTCGAAGAACCAGCTTTACACCATCATGTCTCAAATGAAGAATCTTATAGAGCAGAACCAGCAGCAAGCCAGGCAGATCCTCATTCAGAACCCGCTTCTGACCAAAGCTCTTTTCCAGGCACAGATTATGCTTGGAATGGTGCGCCCACCTCAAGTGATTCCCAGCATTCAGCCATCAGCATCACAGCATTCCCAGCAGTCTACACAACCAACTCAGCAATCAAACATTCAGTCTGCTTCCGTGTCGCTGGGTCAAGTTGGTTTGCAGGACCAAACAGGGCCATCTCAGATCCAAGCTCCTCCGAGAAAGCAATATCAAAACCAATCTGCAATGCCTAGCTCATCAGCTGCTGTTCCATCAATAAATCTTCAGTCTCAGCCTATGCCTTCACACCCTCTGCAGACCCCACAGCAGCCTAAGGGACATCTGAGTCATCAAATGACCCCGACATCGCTTCCACAGTCCTCTCAACTTCCAAATATACCCTCACATCCTCTTCATTCTTCTTCACAGCCACCTTCGCTTCATCAAACCCAAATGGCTACTGCTTCCGGCCAGTTGCAACAGTCATTACAGACATCAGGAGTTCTGCATATGCCAATGCAACCACCGTTGCCACCACAACCAAGACCACCTTCCATGCCTAACTTCCATCACCAGTATCCGCAACAAATGGGGCCAAACATGGGTTACCAACATGCTAATTCTCAACATCTTCCACAATCCATGTTTCATTCAGGTACAAAACCCCCTGCTAGTGCTGGGCCATCATTTCCCCAGGGACAGCCACCACTTCCAAGTCAACCACCACCTCAATCTTTGTATCAGGGTGGAGGTATGCATTTAGGTTCAGAGTTCAACAATCAAGCTGGATCTTCCATGCAAGTGGACAGAGGATCATGGATGTCTGGCCCTTCGGAGAGTTCAAGTTCAGGACCGCCACAATTGGTTCCTGGTCAAATGGGCCCTGGAAGCCAGTCGACTCGCCCCCCACCTTTGACCCCTGATATGGAGAAGGCACTGCTTCAACAGGTCATGAGCCTCACACCAGATCAAATTAACCTCCTGCCTCCAGAGCAAAGGAATCAAGTGCTACAGCTACAGCAGATATTGCGCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CSTF2_hinge CSTF_C

Protein Analysis

392

Amino Acids

42.21

Weight (kDa)

9.64

Isoelectric Point (pI)

86.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73840 AT1G73840
fragaria_vesca	FvH4_5g12080 FvH4_5g12080 FvH4_5g12080 FvH4_5g12080
malus_domestica	MD14G1227000.v1.1
prunus_persica	Prupe.5G221700_v2.0.a1
pyrus_communis	pycom14g18840
rosa_chinensis	RchiOBHm_Chr7g0185491
rosa_laevigata	RLG00000004908
rosa_multiflora	Rmu_sc0010190.1_g000021 Rmu_sc0032992.1_g000001 Rmu_sc0042045.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268890
rosa_rugosa	Rorug06G0469800
rosa_samantha	Rh7AG073000 Rh7BG074600 Rh7CG074700 Rh7DG074600
rosa_wichuraiana	Rw7G006210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	483
Acc36I	ACCTGC	1 cut(s)	43
AccI	GTMKAC	3 cut(s)	31, 254, 1034
AciI	CCGC	5 cut(s)	5, 38, 146, 719, 992
AclWI	GGATC	4 cut(s)	124, 337, 934, 958
AcoI	YGGCCR	1 cut(s)	607
AcuI	CTGAAG	1 cut(s)	407
AfaI	GTAC	1 cut(s)	796
AfiI	CCNNNNNNNGG	2 cut(s)	740, 1063
AgsI	TTSAA	3 cut(s)	913, 981, 1082
AjnI	CCWGG	5 cut(s)	122, 168, 831, 1006, 1021
AjuI	GAANNNNNNNTTGG	4 cut(s)	149, 181, 673, 705
AluBI	AGCT	7 cut(s)	67, 161, 350, 393, 401, 923, 1153
AluI	AGCT	7 cut(s)	67, 161, 350, 393, 401, 923, 1153
Alw26I	GTCTC	2 cut(s)	87, 432
AlwI	GGATC	4 cut(s)	124, 337, 934, 958
AlwNI	CAGNNNCTG	1 cut(s)	404
AoxI	GGCC	6 cut(s)	332, 607, 731, 818, 964, 1018
ApaI	GGGCCC	1 cut(s)	1022
ApeKI	GCWGC	3 cut(s)	115, 401, 466
ArsI	GACNNNNNNTTYG	2 cut(s)	269, 301
AspLEI	GCGC	2 cut(s)	198, 1170
AspS9I	GGNCC	8 cut(s)	322, 332, 731, 818, 965, 989, 1018, 1019
AsuHPI	GGTGA	1 cut(s)	701
AvaII	GGWCC	2 cut(s)	322, 989
AxyI	CCTNAGG	1 cut(s)	471
BaeGI	GKGCMC	1 cut(s)	1022
BanII	GRGCYC	1 cut(s)	1022
BbvI	GCAGC	3 cut(s)	127, 388, 478
BccI	CCATC	6 cut(s)	83, 235, 343, 418, 714, 829
BciT130I	CCWGG	5 cut(s)	124, 170, 833, 1008, 1023
BciVI	GTATCC	1 cut(s)	726
BcoDI	GTCTC	2 cut(s)	87, 432
BfaI	CTAG	2 cut(s)	390, 810
BfmI	CTRYAG	3 cut(s)	452, 1148, 1154
BfuAI	ACCTGC	1 cut(s)	43
BfuI	GTATCC	1 cut(s)	726
BisI	GCNGC	3 cut(s)	116, 402, 467
BlsI	GCNGC	3 cut(s)	117, 403, 468
Bme1390I	CCNGG	5 cut(s)	124, 170, 833, 1008, 1023
Bme18I	GGWCC	2 cut(s)	322, 989
BmgT120I	GGNCC	8 cut(s)	322, 332, 731, 818, 965, 989, 1018, 1019
BmiI	GGNNCC	3 cut(s)	732, 1005, 1020
BmrFI	CCNGG	5 cut(s)	124, 170, 833, 1008, 1023
BmsI	GCATC	1 cut(s)	242
BpmI	CTGGAG	1 cut(s)	1110
BpuEI	CTTGAG	1 cut(s)	189
BsaJI	CCNNGG	3 cut(s)	831, 832, 1021
Bsc4I	CCNNNNNNNGG	2 cut(s)	740, 1063
Bse118I	RCCGGY	1 cut(s)	20
Bse1I	ACTGG	3 cut(s)	610, 712, 1030
Bse21I	CCTNAGG	1 cut(s)	471
Bse3DI	GCAATG	1 cut(s)	390
BseBI	CCWGG	5 cut(s)	124, 170, 833, 1008, 1023
BseDI	CCNNGG	3 cut(s)	831, 832, 1021
BseGI	GGATG	2 cut(s)	544, 963
BseLI	CCNNNNNNNGG	2 cut(s)	740, 1063
BseMI	GCAATG	1 cut(s)	390
BseMII	CTCAG	4 cut(s)	281, 353, 443, 473
BseNI	ACTGG	3 cut(s)	610, 712, 1030
BseRI	GAGGAG	1 cut(s)	342
BseSI	GKGCMC	1 cut(s)	1022
BseXI	GCAGC	3 cut(s)	127, 388, 478
BseYI	CCCAGC	4 cut(s)	215, 246, 301, 815
BshFI	GGCC	6 cut(s)	334, 609, 733, 820, 966, 1020
BsiSI	CCGG	3 cut(s)	21, 48, 606
BslFI	GGGAC	2 cut(s)	489, 849
BslI	CCNNNNNNNGG	2 cut(s)	740, 1063
BsmAI	GTCTC	2 cut(s)	87, 432
BsmFI	GGGAC	2 cut(s)	489, 849
BsmI	GAATGC	2 cut(s)	219, 241
BsnI	GGCC	6 cut(s)	334, 609, 733, 820, 966, 1020
Bsp120I	GGGCCC	1 cut(s)	1018
Bsp1286I	GDGCHC	1 cut(s)	1022
Bsp143I	GATC	5 cut(s)	129, 342, 926, 950, 1105
BspACI	CCGC	5 cut(s)	5, 38, 146, 719, 992
BspANI	GGCC	6 cut(s)	334, 609, 733, 820, 966, 1020
BspCNI	CTCAG	4 cut(s)	280, 352, 442, 474
BspHI	TCATGA	1 cut(s)	1089
BspLI	GGNNCC	3 cut(s)	732, 1005, 1020
BspMAI	CTGCAG	1 cut(s)	456
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	4 cut(s)	124, 337, 934, 958
BsrDI	GCAATG	1 cut(s)	390
BsrFI	RCCGGY	1 cut(s)	20
BsrI	ACTGG	3 cut(s)	610, 712, 1030
BssAI	RCCGGY	1 cut(s)	20
BssECI	CCNNGG	3 cut(s)	831, 832, 1021
BssMI	GATC	5 cut(s)	129, 342, 926, 950, 1105
Bst2UI	CCWGG	5 cut(s)	124, 170, 833, 1008, 1023
Bst4CI	ACNGT	4 cut(s)	29, 516, 621, 666
Bst6I	CTCTTC	1 cut(s)	555
BstAPI	GCANNNNNTGC	1 cut(s)	1165
BstC8I	GCNNGC	2 cut(s)	22, 120
BstDEI	CTNAG	5 cut(s)	267, 339, 429, 471, 482
BstEII	GGTNACC	1 cut(s)	743
BstF5I	GGATG	2 cut(s)	544, 963
BstHHI	GCGC	2 cut(s)	198, 1170
BstKTI	GATC	5 cut(s)	132, 345, 929, 953, 1108
BstMAI	GTCTC	2 cut(s)	87, 432
BstMBI	GATC	5 cut(s)	129, 342, 926, 950, 1105
BstMWI	GCNNNNNNNGC	8 cut(s)	44, 112, 124, 247, 574, 1026, 1129, 1165
BstNI	CCWGG	5 cut(s)	124, 170, 833, 1008, 1023
BstNSI	RCATGY	1 cut(s)	755
BstPI	GGTNACC	1 cut(s)	743
BstSCI	CCNGG	5 cut(s)	122, 168, 831, 1006, 1021
BstSFI	CTRYAG	3 cut(s)	452, 1148, 1154
BstSLI	GKGCMC	1 cut(s)	1022
BstV1I	GCAGC	3 cut(s)	127, 388, 478
BstX2I	RGATCY	3 cut(s)	129, 342, 926
BstXI	CCANNNNNNTGG	1 cut(s)	940
BstYI	RGATCY	3 cut(s)	129, 342, 926
Bsu36I	CCTNAGG	1 cut(s)	471
BsuI	GTATCC	1 cut(s)	726
BsuRI	GGCC	6 cut(s)	334, 609, 733, 820, 966, 1020
BtgZI	GCGATG	1 cut(s)	489
BtsCI	GGATG	2 cut(s)	544, 963
BtsI	GCAGTG	1 cut(s)	1073
BtsIMutI	CAGTG	1 cut(s)	1073
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	2 cut(s)	22, 120
CaiI	CAGNNNCTG	1 cut(s)	404
CciI	TCATGA	1 cut(s)	1089
CfoI	GCGC	2 cut(s)	198, 1170
Cfr10I	RCCGGY	1 cut(s)	20
Cfr13I	GGNCC	8 cut(s)	322, 332, 731, 818, 965, 989, 1018, 1019
Csp6I	GTAC	1 cut(s)	795
CviAII	CATG	8 cut(s)	79, 694, 739, 752, 781, 934, 954, 1090
CviQI	GTAC	1 cut(s)	795
DdeI	CTNAG	5 cut(s)	267, 339, 429, 471, 482
DpnI	GATC	5 cut(s)	131, 344, 928, 952, 1107
DpnII	GATC	5 cut(s)	129, 342, 926, 950, 1105
DrdI	GACNNNNNNGTC	1 cut(s)	483
DseDI	GACNNNNNNGTC	1 cut(s)	483
EaeI	YGGCCR	1 cut(s)	607
Eam1104I	CTCTTC	1 cut(s)	555
EarI	CTCTTC	1 cut(s)	555
Eco24I	GRGCYC	1 cut(s)	1022
Eco47I	GGWCC	2 cut(s)	322, 989
Eco57I	CTGAAG	1 cut(s)	407
Eco81I	CCTNAGG	1 cut(s)	471
Eco91I	GGTNACC	1 cut(s)	743
EcoO109I	RGGNCCY	1 cut(s)	1019
EcoO65I	GGTNACC	1 cut(s)	743
EcoRII	CCWGG	5 cut(s)	122, 168, 831, 1006, 1021
EcoT22I	ATGCAT	1 cut(s)	897
EcoT38I	GRGCYC	1 cut(s)	1022
FaeI	CATG	8 cut(s)	82, 697, 742, 755, 784, 937, 957, 1093
FalI	AAGNNNNNCTT	2 cut(s)	673, 705
FaqI	GGGAC	2 cut(s)	489, 849
FatI	CATG	8 cut(s)	78, 693, 738, 751, 780, 933, 953, 1089
FauI	CCCGC	1 cut(s)	153
FauNDI	CATATG	1 cut(s)	648
FblI	GTMKAC	3 cut(s)	31, 254, 1034
Fnu4HI	GCNGC	3 cut(s)	116, 402, 467
FokI	GGATG	2 cut(s)	531, 970
FriOI	GRGCYC	1 cut(s)	1022
Fsp4HI	GCNGC	3 cut(s)	116, 402, 467
FspBI	CTAG	2 cut(s)	390, 810
GlaI	GCGC	2 cut(s)	197, 1169
GluI	GCNGC	3 cut(s)	116, 402, 467
GsaI	CCCAGC	4 cut(s)	219, 250, 305, 819
GsuI	CTGGAG	1 cut(s)	1110
HaeIII	GGCC	6 cut(s)	334, 609, 733, 820, 966, 1020
HapII	CCGG	3 cut(s)	21, 48, 606
HhaI	GCGC	2 cut(s)	198, 1170
Hin1II	CATG	8 cut(s)	82, 697, 742, 755, 784, 937, 957, 1093
Hin6I	GCGC	2 cut(s)	196, 1168
HinP1I	GCGC	2 cut(s)	196, 1168
HincII	GTYRAC	2 cut(s)	857, 1035
HindII	GTYRAC	2 cut(s)	857, 1035
HinfI	GANTC	5 cut(s)	94, 211, 484, 1036, 1138
HpaII	CCGG	3 cut(s)	21, 48, 606
HphI	GGTGA	1 cut(s)	701
Hpy166II	GTNNAC	5 cut(s)	32, 255, 857, 943, 1035
Hpy188I	TCNGA	7 cut(s)	141, 153, 342, 357, 483, 907, 973
Hpy188III	TCNNGA	4 cut(s)	636, 987, 1090, 1127
Hpy8I	GTNNAC	5 cut(s)	32, 255, 857, 943, 1035
HpyAV	CCTTC	5 cut(s)	450, 582, 699, 978, 1063
HpyCH4III	ACNGT	4 cut(s)	29, 516, 621, 666
HpyCH4V	TGCA	8 cut(s)	319, 383, 454, 616, 646, 658, 895, 937
HpyF10VI	GCNNNNNNNGC	8 cut(s)	44, 112, 124, 247, 574, 1026, 1129, 1165
HpyF3I	CTNAG	5 cut(s)	267, 339, 429, 471, 482
Hsp92II	CATG	8 cut(s)	82, 697, 742, 755, 784, 937, 957, 1093
HspAI	GCGC	2 cut(s)	196, 1168
KroI	GCCGGC	1 cut(s)	20
KroNI	GCCGGC	1 cut(s)	22
Kzo9I	GATC	5 cut(s)	129, 342, 926, 950, 1105
LmnI	GCTCC	1 cut(s)	355
Lsp1109I	GCAGC	3 cut(s)	127, 388, 478
LweI	GCATC	1 cut(s)	242
MaeI	CTAG	2 cut(s)	390, 810
MaeIII	GTNAC	1 cut(s)	743
MalI	GATC	5 cut(s)	131, 344, 928, 952, 1107
MboI	GATC	5 cut(s)	129, 342, 926, 950, 1105
MboII	GAAGA	8 cut(s)	70, 103, 413, 542, 549, 552, 761, 921
MfeI	CAATTG	1 cut(s)	998
MflI	RGATCY	3 cut(s)	129, 342, 926
MhlI	GDGCHC	1 cut(s)	1022
MluCI	AATT	3 cut(s)	757, 998, 1110
MlyI	GAGTC	2 cut(s)	493, 1030
Mph1103I	ATGCAT	1 cut(s)	897
MreI	CGCCGGCG	1 cut(s)	20
MroNI	GCCGGC	1 cut(s)	20
MseI	TTAA	1 cut(s)	1113
MslI	CAYNNNNRTG	2 cut(s)	77, 938
MspA1I	CMGCKG	1 cut(s)	401
MspI	CCGG	3 cut(s)	21, 48, 606
MspR9I	CCNGG	5 cut(s)	124, 170, 833, 1008, 1023
MunI	CAATTG	1 cut(s)	998
Mva1269I	GAATGC	2 cut(s)	219, 241
MvaI	CCWGG	5 cut(s)	124, 170, 833, 1008, 1023
MwoI	GCNNNNNNNGC	8 cut(s)	44, 112, 124, 247, 574, 1026, 1129, 1165
NaeI	GCCGGC	1 cut(s)	22
NdeI	CATATG	1 cut(s)	648
NdeII	GATC	5 cut(s)	129, 342, 926, 950, 1105
NgoMIV	GCCGGC	1 cut(s)	20
NlaIII	CATG	8 cut(s)	82, 697, 742, 755, 784, 937, 957, 1093
NlaIV	GGNNCC	3 cut(s)	732, 1005, 1020
NsiI	ATGCAT	1 cut(s)	897
NspI	RCATGY	1 cut(s)	755
PagI	TCATGA	1 cut(s)	1089
PasI	CCCWGGG	1 cut(s)	832
PctI	GAATGC	2 cut(s)	219, 241
PdiI	GCCGGC	1 cut(s)	22
PfeI	GAWTC	3 cut(s)	94, 211, 1138
PkrI	GCNGC	3 cut(s)	117, 403, 468
PleI	GAGTC	2 cut(s)	492, 1030
PpsI	GAGTC	2 cut(s)	492, 1030
Psp6I	CCWGG	5 cut(s)	122, 168, 831, 1006, 1021
PspEI	GGTNACC	1 cut(s)	743
PspFI	CCCAGC	4 cut(s)	215, 246, 301, 815
PspGI	CCWGG	5 cut(s)	122, 168, 831, 1006, 1021
PspN4I	GGNNCC	3 cut(s)	732, 1005, 1020
PspOMI	GGGCCC	1 cut(s)	1018
PspPI	GGNCC	8 cut(s)	322, 332, 731, 818, 965, 989, 1018, 1019
PsrI	GAACNNNNNNTAC	2 cut(s)	53, 85
PstI	CTGCAG	1 cut(s)	456
PstNI	CAGNNNCTG	1 cut(s)	404
PsuI	RGATCY	3 cut(s)	129, 342, 926
PvuII	CAGCTG	1 cut(s)	401
RsaI	GTAC	1 cut(s)	796
RsaNI	GTAC	1 cut(s)	795
RseI	CAYNNNNRTG	2 cut(s)	77, 938
SalI	GTCGAC	1 cut(s)	1033
SaqAI	TTAA	1 cut(s)	1113
SatI	GCNGC	3 cut(s)	116, 402, 467
Sau3AI	GATC	5 cut(s)	129, 342, 926, 950, 1105
Sau96I	GGNCC	8 cut(s)	322, 332, 731, 818, 965, 989, 1018, 1019
SchI	GAGTC	2 cut(s)	493, 1030
ScrFI	CCNGG	5 cut(s)	124, 170, 833, 1008, 1023
SduI	GDGCHC	1 cut(s)	1022
SfaNI	GCATC	1 cut(s)	242
SfcI	CTRYAG	3 cut(s)	452, 1148, 1154
SgrAI	CRCCGGYG	1 cut(s)	20
SinI	GGWCC	2 cut(s)	322, 989
SmiMI	CAYNNNNRTG	2 cut(s)	77, 938
SmlI	CTYRAG	1 cut(s)	204
SmoI	CTYRAG	1 cut(s)	204
Sse9I	AATT	3 cut(s)	757, 998, 1110
SsiI	CCGC	5 cut(s)	5, 38, 146, 719, 992
SspMI	CTAG	2 cut(s)	390, 810
StyD4I	CCNGG	5 cut(s)	122, 168, 831, 1006, 1021
TaaI	ACNGT	4 cut(s)	29, 516, 621, 666
TaqI	TCGA	2 cut(s)	56, 1034
TasI	AATT	3 cut(s)	757, 998, 1110
TfiI	GAWTC	3 cut(s)	94, 211, 1138
Tru1I	TTAA	1 cut(s)	1113
Tru9I	TTAA	1 cut(s)	1113
TscAI	CASTG	1 cut(s)	1080
TseI	GCWGC	3 cut(s)	115, 401, 466
TspDTI	ATGAA	4 cut(s)	104, 542, 569, 776
TspGWI	ACGGA	1 cut(s)	283
TspRI	CASTG	1 cut(s)	1080
VpaK11BI	GGWCC	2 cut(s)	322, 989
XceI	RCATGY	1 cut(s)	755
XmiI	GTMKAC	3 cut(s)	31, 254, 1034
XspI	CTAG	2 cut(s)	390, 810
Zsp2I	ATGCAT	1 cut(s)	897

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.