Rroxscaffold_3G00268890

Transcription termination and cleavage factor C-terminal

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
61904783 .. 61907780
2998 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00268890.1

Sequence Viewer

Length: 1158 bp
ATGGCGGGAAAGCAAATCTCCGGCGACGGCCTACCGGCGAATATAGCCGGAATGTCGAAGAACCAGCTCTACGAAATCATGTCTCAAATGAAGAGTCTGATAGAACAGAACCAGCAGCAAGCGAGGCAGATCCTCATCCAGAATCCGCTTCTCACCAAAGCGCTTTTCCAGGCACAAATTATGCTTGGAATGGTCCGGCCACCTCAATCGATTCCCACCATTCAGCCAGTGACGTCGCAGCATTCACAGCAGTCCGTGCAACCAACTCAGCAGTCTAACGCTCTGGCAGCTCCCTCATTGCCAGGCCTTGGTGTTCAGGACCAACCAGGTCCATCCCAGATCCAAGCTCCTGCAAGAAAGCAATACCAAAACCAATCTACAGTGCCTAGCTCATCGGCTGCTCCTCCCGCGTTTAATCTTCAGTCTCAGCCTATGCCTTCATATTCCCTGCAGACCCAGCAGCAGCCTAAGGGACATCTGAATCCCCAAATGACCCCGGCATCTCTTCCACAATCCTCTCAACTTCCAAATCCTCCAACACACCCTCATCATTCTTCACAGCCACCTCAACTTCATCAACCCCAAATGGCTTCTTACAACCAGTTGCAACAGCCATTACAGACGAGTGGAGGTCATCATATGCCCCTGCAACCACCATTGCCACCACAACCAAGACCTTCAATGCCTAACTACCACCATCAGTATCCCCCACAAATGGGGCCCAATTCGGGTTTCCAACATCCTTCGCAATCCATGTTTCATTCAGGTACAAAACCCCCTACTAGTATTGGGCCTTCATTTCCCCTGGGACAGCCACCACTTCCAAGTCACCCACCACCTCAATCCATGTATCAGGGAGGAGGTATGCATTTGGGTTCAGAGTACAGCAATCAAGTTGGAACTTCTATGCAAGCAGATAGAGGATCTTGGATGTCTGGCCCGCCAGAGAGTTCGTCAGTGCCACAGCTTTCAGGACCACCATCATTAGTTCCTGGTCAAATGCCTGGCAGCCAGCCTGGTCGTGGCACAGCGTTAACCCCTGAGGAGGAGAAGGCGCTGCTTCAACAAGTGATGATTCTTACCCCAGAACAAATTAATCTCCTGCCTCCAGAACAGAAAAAACAAGTGCTACAGCTACAGCAGATAATGCGCCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

385

Amino Acids

41.65

Weight (kDa)

9.45

Isoelectric Point (pI)

89.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CSTF2_hinge PF14327 13 - 67 9.8e-17 Hinge domain of cleavage stimulation factor subunit 2
CSTF_C PF14304 349 - 384 5.4e-08 Transcription termination and cleavage factor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 236
AccB7I CCANNNNNTGG 1 cut(s) 308
AccII CGCG 1 cut(s) 410
AciI CCGC 4 cut(s) 5, 146, 408, 941
AclWI GGATC 3 cut(s) 124, 334, 931
AcoI YGGCCR 1 cut(s) 197
AcuI CTGAAG 1 cut(s) 404
AcyI GRCGYC 1 cut(s) 233
AfaI GTAC 2 cut(s) 769, 884
AfeI AGCGCT 1 cut(s) 162
AfiI CCNNNNNNNGG 6 cut(s) 308, 715, 716, 728, 1022, 1045
AgsI TTSAA 2 cut(s) 681, 1064
AhlI ACTAGT 1 cut(s) 782
AjnI CCWGG 7 cut(s) 168, 301, 325, 804, 991, 1003, 1015
AjuI GAANNNNNNNTTGG 4 cut(s) 149, 181, 716, 748
AluBI AGCT 6 cut(s) 67, 290, 347, 390, 967, 1135
AluI AGCT 6 cut(s) 67, 290, 347, 390, 967, 1135
Alw26I GTCTC 2 cut(s) 87, 429
AlwI GGATC 3 cut(s) 124, 334, 931
Aor51HI AGCGCT 1 cut(s) 162
AoxI GGCC 6 cut(s) 28, 197, 304, 719, 791, 937
ApaI GGGCCC 1 cut(s) 723
ApeKI GCWGC 8 cut(s) 115, 238, 287, 398, 460, 463, 1008, 1057
ArsI GACNNNNNNTTYG 2 cut(s) 79, 111
AseI ATTAAT 1 cut(s) 1095
AspLEI GCGC 3 cut(s) 163, 1057, 1152
AspS9I GGNCC 8 cut(s) 193, 319, 329, 719, 720, 791, 938, 974
AsuC2I CCSGG 1 cut(s) 497
AsuHPI GGTGA 2 cut(s) 145, 821
AvaII GGWCC 4 cut(s) 193, 319, 329, 974
AxyI CCTNAGG 2 cut(s) 468, 1041
BaeGI GKGCMC 1 cut(s) 723
BanII GRGCYC 1 cut(s) 723
BarI GAAGNNNNNNTAC 2 cut(s) 778, 810
BbvI GCAGC 8 cut(s) 127, 250, 299, 385, 472, 475, 1020, 1044
BccI CCATC 3 cut(s) 340, 705, 988
BceAI ACGGC 1 cut(s) 43
BciT130I CCWGG 7 cut(s) 170, 303, 327, 806, 993, 1005, 1017
BciVI GTATCC 1 cut(s) 714
BcnI CCSGG 1 cut(s) 497
BcoDI GTCTC 2 cut(s) 87, 429
BcuI ACTAGT 1 cut(s) 782
BfaI CTAG 2 cut(s) 387, 783
BfmI CTRYAG 4 cut(s) 378, 449, 1130, 1136
BfoI RGCGCY 2 cut(s) 164, 1058
BfuI GTATCC 1 cut(s) 714
BisI GCNGC 8 cut(s) 116, 239, 288, 399, 461, 464, 1009, 1058
BlsI GCNGC 8 cut(s) 117, 240, 289, 400, 462, 465, 1010, 1059
Bme1390I CCNGG 8 cut(s) 170, 303, 327, 497, 806, 993, 1005, 1017
Bme18I GGWCC 4 cut(s) 193, 319, 329, 974
BmgT120I GGNCC 8 cut(s) 193, 319, 329, 719, 720, 791, 938, 974
BmiI GGNNCC 2 cut(s) 720, 721
BmrFI CCNGG 8 cut(s) 170, 303, 327, 497, 806, 993, 1005, 1017
BmsI GCATC 1 cut(s) 509
BpmI CTGGAG 1 cut(s) 1092
BpuMI CCSGG 1 cut(s) 497
Bsa29I ATCGAT 1 cut(s) 209
BsaBI GATNNNNATC 1 cut(s) 134
BsaHI GRCGYC 1 cut(s) 233
BsaJI CCNNGG 4 cut(s) 307, 495, 804, 805
Bsc4I CCNNNNNNNGG 6 cut(s) 308, 715, 716, 728, 1022, 1045
Bse118I RCCGGY 1 cut(s) 34
Bse1I ACTGG 2 cut(s) 227, 601
Bse21I CCTNAGG 2 cut(s) 468, 1041
Bse3DI GCAATG 2 cut(s) 296, 656
Bse8I GATNNNNATC 1 cut(s) 134
BseBI CCWGG 7 cut(s) 170, 303, 327, 806, 993, 1005, 1017
BseCI ATCGAT 1 cut(s) 209
BseDI CCNNGG 4 cut(s) 307, 495, 804, 805
BseGI GGATG 4 cut(s) 135, 332, 739, 936
BseJI GATNNNNATC 1 cut(s) 134
BseLI CCNNNNNNNGG 6 cut(s) 308, 715, 716, 728, 1022, 1045
BseMI GCAATG 2 cut(s) 296, 656
BseMII CTCAG 3 cut(s) 281, 440, 1032
BseNI ACTGG 2 cut(s) 227, 601
BseRI GAGGAG 4 cut(s) 393, 873, 1058, 1061
BseSI GKGCMC 1 cut(s) 723
BseXI GCAGC 8 cut(s) 127, 250, 299, 385, 472, 475, 1020, 1044
BseYI CCCAGC 1 cut(s) 456
Bsh1236I CGCG 1 cut(s) 410
BshFI GGCC 6 cut(s) 30, 199, 306, 721, 793, 939
BshVI ATCGAT 1 cut(s) 209
BsiSI CCGG 5 cut(s) 21, 35, 48, 196, 497
BslFI GGGAC 2 cut(s) 486, 822
BslI CCNNNNNNNGG 6 cut(s) 308, 715, 716, 728, 1022, 1045
BsmAI GTCTC 2 cut(s) 87, 429
BsmFI GGGAC 2 cut(s) 486, 822
BsmI GAATGC 1 cut(s) 241
BsnI GGCC 6 cut(s) 30, 199, 306, 721, 793, 939
Bsp120I GGGCCC 1 cut(s) 719
Bsp1286I GDGCHC 1 cut(s) 723
Bsp143I GATC 3 cut(s) 129, 339, 923
BspACI CCGC 4 cut(s) 5, 146, 408, 941
BspANI GGCC 6 cut(s) 30, 199, 306, 721, 793, 939
BspCNI CTCAG 3 cut(s) 280, 439, 1033
BspDI ATCGAT 1 cut(s) 209
BspFNI CGCG 1 cut(s) 410
BspLI GGNNCC 2 cut(s) 720, 721
BspMAI CTGCAG 1 cut(s) 453
BspPI GGATC 3 cut(s) 124, 334, 931
BsrDI GCAATG 2 cut(s) 296, 656
BsrFI RCCGGY 1 cut(s) 34
BsrI ACTGG 2 cut(s) 227, 601
BssAI RCCGGY 1 cut(s) 34
BssECI CCNNGG 4 cut(s) 307, 495, 804, 805
BssMI GATC 3 cut(s) 129, 339, 923
BssNI GRCGYC 1 cut(s) 233
BssT1I CCWWGG 1 cut(s) 307
Bst2UI CCWGG 7 cut(s) 170, 303, 327, 806, 993, 1005, 1017
Bst4CI ACNGT 1 cut(s) 382
Bst6I CTCTTC 2 cut(s) 86, 510
BstACI GRCGYC 1 cut(s) 233
BstAPI GCANNNNNTGC 2 cut(s) 256, 1147
BstC8I GCNNGC 4 cut(s) 120, 912, 941, 1013
BstDEI CTNAG 4 cut(s) 267, 426, 468, 1041
BstF5I GGATG 4 cut(s) 135, 332, 739, 936
BstFNI CGCG 1 cut(s) 410
BstH2I RGCGCY 2 cut(s) 164, 1058
BstHHI GCGC 3 cut(s) 163, 1057, 1152
BstKTI GATC 3 cut(s) 132, 342, 926
BstMAI GTCTC 2 cut(s) 87, 429
BstMBI GATC 3 cut(s) 129, 339, 923
BstMWI GCNNNNNNNGC 8 cut(s) 44, 124, 247, 256, 287, 407, 457, 1147
BstNI CCWGG 7 cut(s) 170, 303, 327, 806, 993, 1005, 1017
BstSCI CCNGG 8 cut(s) 168, 301, 325, 495, 804, 991, 1003, 1015
BstSFI CTRYAG 4 cut(s) 378, 449, 1130, 1136
BstSLI GKGCMC 1 cut(s) 723
BstUI CGCG 1 cut(s) 410
BstV1I GCAGC 8 cut(s) 127, 250, 299, 385, 472, 475, 1020, 1044
BstX2I RGATCY 3 cut(s) 129, 339, 923
BstYI RGATCY 3 cut(s) 129, 339, 923
Bsu15I ATCGAT 1 cut(s) 209
Bsu36I CCTNAGG 2 cut(s) 468, 1041
BsuI GTATCC 1 cut(s) 714
BsuRI GGCC 6 cut(s) 30, 199, 306, 721, 793, 939
BsuTUI ATCGAT 1 cut(s) 209
BtsCI GGATG 4 cut(s) 135, 332, 739, 936
BtsIMutI CAGTG 3 cut(s) 234, 387, 963
Cac8I GCNNGC 4 cut(s) 120, 912, 941, 1013
CfoI GCGC 3 cut(s) 163, 1057, 1152
Cfr10I RCCGGY 1 cut(s) 34
Cfr13I GGNCC 8 cut(s) 193, 319, 329, 719, 720, 791, 938, 974
ClaI ATCGAT 1 cut(s) 209
CsiI ACCWGGT 1 cut(s) 325
Csp6I GTAC 2 cut(s) 768, 883
CviAII CATG 3 cut(s) 79, 754, 847
CviQI GTAC 2 cut(s) 768, 883
DdeI CTNAG 4 cut(s) 267, 426, 468, 1041
DpnI GATC 3 cut(s) 131, 341, 925
DpnII GATC 3 cut(s) 129, 339, 923
EaeI YGGCCR 1 cut(s) 197
Eam1104I CTCTTC 2 cut(s) 86, 510
EarI CTCTTC 2 cut(s) 86, 510
Eco130I CCWWGG 1 cut(s) 307
Eco147I AGGCCT 1 cut(s) 306
Eco24I GRGCYC 1 cut(s) 723
Eco47I GGWCC 4 cut(s) 193, 319, 329, 974
Eco47III AGCGCT 1 cut(s) 162
Eco57I CTGAAG 1 cut(s) 404
Eco81I CCTNAGG 2 cut(s) 468, 1041
EcoO109I RGGNCCY 1 cut(s) 719
EcoRII CCWGG 7 cut(s) 168, 301, 325, 804, 991, 1003, 1015
EcoT14I CCWWGG 1 cut(s) 307
EcoT22I ATGCAT 1 cut(s) 870
EcoT38I GRGCYC 1 cut(s) 723
ErhI CCWWGG 1 cut(s) 307
FaeI CATG 3 cut(s) 82, 757, 850
FaqI GGGAC 2 cut(s) 486, 822
FatI CATG 3 cut(s) 78, 753, 846
FauI CCCGC 2 cut(s) 415, 948
FauNDI CATATG 1 cut(s) 639
Fnu4HI GCNGC 8 cut(s) 116, 239, 288, 399, 461, 464, 1009, 1058
FokI GGATG 4 cut(s) 122, 319, 726, 943
FriOI GRGCYC 1 cut(s) 723
Fsp4HI GCNGC 8 cut(s) 116, 239, 288, 399, 461, 464, 1009, 1058
FspBI CTAG 2 cut(s) 387, 783
GlaI GCGC 3 cut(s) 162, 1056, 1151
GluI GCNGC 8 cut(s) 116, 239, 288, 399, 461, 464, 1009, 1058
GsaI CCCAGC 1 cut(s) 460
GsuI CTGGAG 1 cut(s) 1092
HaeII RGCGCY 2 cut(s) 164, 1058
HaeIII GGCC 6 cut(s) 30, 199, 306, 721, 793, 939
HapII CCGG 5 cut(s) 21, 35, 48, 196, 497
HhaI GCGC 3 cut(s) 163, 1057, 1152
Hin1I GRCGYC 1 cut(s) 233
Hin1II CATG 3 cut(s) 82, 757, 850
Hin6I GCGC 3 cut(s) 161, 1055, 1150
HinP1I GCGC 3 cut(s) 161, 1055, 1150
HincII GTYRAC 1 cut(s) 1035
HindII GTYRAC 1 cut(s) 1035
HinfI GANTC 5 cut(s) 94, 142, 211, 481, 1075
HpaI GTTAAC 1 cut(s) 1035
HpaII CCGG 5 cut(s) 21, 35, 48, 196, 497
HphI GGTGA 2 cut(s) 145, 821
Hpy166II GTNNAC 1 cut(s) 1035
Hpy188I TCNGA 3 cut(s) 99, 480, 880
Hpy188III TCNNGA 4 cut(s) 139, 317, 972, 1109
Hpy8I GTNNAC 1 cut(s) 1035
Hpy99I CGWCG 2 cut(s) 29, 238
HpyAV CCTTC 5 cut(s) 447, 687, 753, 804, 1045
HpyCH4III ACNGT 1 cut(s) 382
HpyCH4IV ACGT 1 cut(s) 233
HpyCH4V TGCA 7 cut(s) 259, 353, 451, 607, 649, 868, 910
HpyF10VI GCNNNNNNNGC 8 cut(s) 44, 124, 247, 256, 287, 407, 457, 1147
HpyF3I CTNAG 4 cut(s) 267, 426, 468, 1041
HpySE526I ACGT 1 cut(s) 233
Hsp92I GRCGYC 1 cut(s) 233
Hsp92II CATG 3 cut(s) 82, 757, 850
HspAI GCGC 3 cut(s) 161, 1055, 1150
KspAI GTTAAC 1 cut(s) 1035
Kzo9I GATC 3 cut(s) 129, 339, 923
LmnI GCTCC 3 cut(s) 295, 352, 406
Lsp1109I GCAGC 8 cut(s) 127, 250, 299, 385, 472, 475, 1020, 1044
LweI GCATC 1 cut(s) 509
MabI ACCWGGT 1 cut(s) 325
MaeI CTAG 2 cut(s) 387, 783
MaeII ACGT 1 cut(s) 233
MaeIII GTNAC 2 cut(s) 229, 827
MalI GATC 3 cut(s) 131, 341, 925
MboI GATC 3 cut(s) 129, 339, 923
MboII GAAGA 5 cut(s) 70, 103, 410, 497, 546
MflI RGATCY 3 cut(s) 129, 339, 923
MhlI GDGCHC 1 cut(s) 723
MluCI AATT 3 cut(s) 177, 724, 1092
MlyI GAGTC 1 cut(s) 103
MmeI TCCRAC 3 cut(s) 560, 760, 877
Mph1103I ATGCAT 1 cut(s) 870
MseI TTAA 3 cut(s) 414, 1034, 1095
MspI CCGG 5 cut(s) 21, 35, 48, 196, 497
MspR9I CCNGG 8 cut(s) 170, 303, 327, 497, 806, 993, 1005, 1017
Mva1269I GAATGC 1 cut(s) 241
MvaI CCWGG 7 cut(s) 170, 303, 327, 806, 993, 1005, 1017
MvnI CGCG 1 cut(s) 410
MwoI GCNNNNNNNGC 8 cut(s) 44, 124, 247, 256, 287, 407, 457, 1147
NciI CCSGG 1 cut(s) 497
NdeI CATATG 1 cut(s) 639
NdeII GATC 3 cut(s) 129, 339, 923
NlaIII CATG 3 cut(s) 82, 757, 850
NlaIV GGNNCC 2 cut(s) 720, 721
NmuCI GTSAC 2 cut(s) 229, 827
NsiI ATGCAT 1 cut(s) 870
PasI CCCWGGG 1 cut(s) 805
PceI AGGCCT 1 cut(s) 306
PctI GAATGC 1 cut(s) 241
PfeI GAWTC 4 cut(s) 142, 211, 481, 1075
PflMI CCANNNNNTGG 1 cut(s) 308
PkrI GCNGC 8 cut(s) 117, 240, 289, 400, 462, 465, 1010, 1059
PleI GAGTC 1 cut(s) 102
PpsI GAGTC 1 cut(s) 102
PshBI ATTAAT 1 cut(s) 1095
Psp6I CCWGG 7 cut(s) 168, 301, 325, 804, 991, 1003, 1015
PspFI CCCAGC 1 cut(s) 456
PspGI CCWGG 7 cut(s) 168, 301, 325, 804, 991, 1003, 1015
PspN4I GGNNCC 2 cut(s) 720, 721
PspOMI GGGCCC 1 cut(s) 719
PspPI GGNCC 8 cut(s) 193, 319, 329, 719, 720, 791, 938, 974
PsrI GAACNNNNNNTAC 2 cut(s) 53, 85
PstI CTGCAG 1 cut(s) 453
PsuI RGATCY 3 cut(s) 129, 339, 923
RsaI GTAC 2 cut(s) 769, 884
RsaNI GTAC 2 cut(s) 768, 883
SaqAI TTAA 3 cut(s) 414, 1034, 1095
SatI GCNGC 8 cut(s) 116, 239, 288, 399, 461, 464, 1009, 1058
Sau3AI GATC 3 cut(s) 129, 339, 923
Sau96I GGNCC 8 cut(s) 193, 319, 329, 719, 720, 791, 938, 974
SchI GAGTC 1 cut(s) 103
ScrFI CCNGG 8 cut(s) 170, 303, 327, 497, 806, 993, 1005, 1017
SduI GDGCHC 1 cut(s) 723
SexAI ACCWGGT 1 cut(s) 325
SfaNI GCATC 1 cut(s) 509
SfcI CTRYAG 4 cut(s) 378, 449, 1130, 1136
SinI GGWCC 4 cut(s) 193, 319, 329, 974
SpeI ACTAGT 1 cut(s) 782
Sse9I AATT 3 cut(s) 177, 724, 1092
SseBI AGGCCT 1 cut(s) 306
SsiI CCGC 4 cut(s) 5, 146, 408, 941
SspMI CTAG 2 cut(s) 387, 783
StuI AGGCCT 1 cut(s) 306
StyD4I CCNGG 8 cut(s) 168, 301, 325, 495, 804, 991, 1003, 1015
StyI CCWWGG 1 cut(s) 307
TaaI ACNGT 1 cut(s) 382
TaiI ACGT 1 cut(s) 236
TaqI TCGA 2 cut(s) 56, 209
TasI AATT 3 cut(s) 177, 724, 1092
TatI WGTACW 1 cut(s) 882
TfiI GAWTC 4 cut(s) 142, 211, 481, 1075
Tru1I TTAA 3 cut(s) 414, 1034, 1095
Tru9I TTAA 3 cut(s) 414, 1034, 1095
TscAI CASTG 3 cut(s) 234, 387, 963
TseFI GTSAC 2 cut(s) 229, 827
TseI GCWGC 8 cut(s) 115, 238, 287, 398, 460, 463, 1008, 1057
Tsp45I GTSAC 2 cut(s) 229, 827
TspDTI ATGAA 5 cut(s) 104, 429, 563, 749, 786
TspGWI ACGGA 1 cut(s) 244
TspRI CASTG 3 cut(s) 234, 387, 963
Van91I CCANNNNNTGG 1 cut(s) 308
VpaK11BI GGWCC 4 cut(s) 193, 319, 329, 974
VspI ATTAAT 1 cut(s) 1095
XcmI CCANNNNNNNNNTGG 1 cut(s) 1019
XspI CTAG 2 cut(s) 387, 783
ZraI GACGTC 1 cut(s) 234
Zsp2I ATGCAT 1 cut(s) 870
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.