Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042045.1

Orthogroup ID

OG0010390

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 559

Gene Structure 558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042045.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

atgcttggaatggtccggccacctcaatcgattcccaccattcagccagtgacatcgcagcattcacagcagtcggtgcaaccaactcagcagtctaatgctctggcagctccctcattgcctggccttggtgttcaggatcaaccaggtccatcccagatccaagctcctgcaagaaagcaataccaaaaccaatctacagtgcctagctcgtcggctggtcctcccgcgtttaatcttcagtctcagcctatgccttcatatcccctgcagacccagcagcagcctaagggacatctgaatccccaaatgactccagcatctcttccacaatcctctcaacttccaaatcctccaacacaccctcatcattcttcacagccacctcaacttcatcaaccccaaatggcttcttacaaccagttgcaacagccattacagacaagtggaggtcatcatatgcccctgcaaccaccattg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CSTF2_hinge CSTF_C

Protein Analysis

160

Amino Acids

17.21

Weight (kDa)

9.82

Isoelectric Point (pI)

101.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73840 AT1G73840
fragaria_vesca	FvH4_5g12080 FvH4_5g12080 FvH4_5g12080 FvH4_5g12080
malus_domestica	MD14G1227000.v1.1
prunus_persica	Prupe.5G221700_v2.0.a1
pyrus_communis	pycom14g18840
rosa_chinensis	RchiOBHm_Chr7g0185491
rosa_laevigata	RLG00000004908
rosa_multiflora	Rmu_sc0010190.1_g000021 Rmu_sc0032992.1_g000001 Rmu_sc0042045.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268890
rosa_rugosa	Rorug06G0469800
rosa_samantha	Rh7AG073000 Rh7BG074600 Rh7CG074700 Rh7DG074600
rosa_wichuraiana	Rw7G006210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	230
AciI	CCGC	1 cut(s)	228
AclWI	GGATC	2 cut(s)	147, 154
AcoI	YGGCCR	1 cut(s)	17
AcuI	CTGAAG	1 cut(s)	224
AfiI	CCNNNNNNNGG	1 cut(s)	128
AjnI	CCWGG	2 cut(s)	121, 145
AluBI	AGCT	3 cut(s)	110, 167, 210
AluI	AGCT	3 cut(s)	110, 167, 210
Alw26I	GTCTC	1 cut(s)	249
AlwI	GGATC	2 cut(s)	147, 154
AoxI	GGCC	2 cut(s)	17, 124
ApeKI	GCWGC	4 cut(s)	58, 107, 280, 283
AspS9I	GGNCC	3 cut(s)	13, 149, 221
AvaII	GGWCC	3 cut(s)	13, 149, 221
AxyI	CCTNAGG	1 cut(s)	288
BbvI	GCAGC	4 cut(s)	70, 119, 292, 295
BccI	CCATC	1 cut(s)	160
BciT130I	CCWGG	2 cut(s)	123, 147
BcoDI	GTCTC	1 cut(s)	249
BfaI	CTAG	1 cut(s)	207
BfmI	CTRYAG	2 cut(s)	198, 269
BisI	GCNGC	4 cut(s)	59, 108, 281, 284
BlsI	GCNGC	4 cut(s)	60, 109, 282, 285
Bme1390I	CCNGG	2 cut(s)	123, 147
Bme18I	GGWCC	3 cut(s)	13, 149, 221
BmgT120I	GGNCC	3 cut(s)	13, 149, 221
BmrFI	CCNGG	2 cut(s)	123, 147
BmsI	GCATC	1 cut(s)	329
BpmI	CTGGAG	1 cut(s)	300
Bsa29I	ATCGAT	1 cut(s)	29
BsaJI	CCNNGG	1 cut(s)	127
Bsc4I	CCNNNNNNNGG	1 cut(s)	128
Bse1I	ACTGG	2 cut(s)	47, 421
Bse21I	CCTNAGG	1 cut(s)	288
Bse3DI	GCAATG	1 cut(s)	116
BseBI	CCWGG	2 cut(s)	123, 147
BseCI	ATCGAT	1 cut(s)	29
BseDI	CCNNGG	1 cut(s)	127
BseGI	GGATG	1 cut(s)	152
BseLI	CCNNNNNNNGG	1 cut(s)	128
BseMI	GCAATG	1 cut(s)	116
BseMII	CTCAG	2 cut(s)	101, 260
BseNI	ACTGG	2 cut(s)	47, 421
BseXI	GCAGC	4 cut(s)	70, 119, 292, 295
BseYI	CCCAGC	1 cut(s)	276
Bsh1236I	CGCG	1 cut(s)	230
BshFI	GGCC	2 cut(s)	19, 126
BshVI	ATCGAT	1 cut(s)	29
BsiSI	CCGG	1 cut(s)	16
BslFI	GGGAC	1 cut(s)	306
BslI	CCNNNNNNNGG	1 cut(s)	128
BsmAI	GTCTC	1 cut(s)	249
BsmFI	GGGAC	1 cut(s)	306
BsmI	GAATGC	1 cut(s)	61
BsnI	GGCC	2 cut(s)	19, 126
Bsp143I	GATC	2 cut(s)	139, 159
BspACI	CCGC	1 cut(s)	228
BspANI	GGCC	2 cut(s)	19, 126
BspCNI	CTCAG	2 cut(s)	100, 259
BspDI	ATCGAT	1 cut(s)	29
BspFNI	CGCG	1 cut(s)	230
BspMAI	CTGCAG	1 cut(s)	273
BspPI	GGATC	2 cut(s)	147, 154
BsrDI	GCAATG	1 cut(s)	116
BsrI	ACTGG	2 cut(s)	47, 421
BssECI	CCNNGG	1 cut(s)	127
BssMI	GATC	2 cut(s)	139, 159
BssT1I	CCWWGG	1 cut(s)	127
Bst2UI	CCWGG	2 cut(s)	123, 147
Bst4CI	ACNGT	1 cut(s)	202
Bst6I	CTCTTC	1 cut(s)	330
BstAPI	GCANNNNNTGC	1 cut(s)	76
BstDEI	CTNAG	3 cut(s)	87, 246, 288
BstF5I	GGATG	1 cut(s)	152
BstFNI	CGCG	1 cut(s)	230
BstKTI	GATC	2 cut(s)	142, 162
BstMAI	GTCTC	1 cut(s)	249
BstMBI	GATC	2 cut(s)	139, 159
BstMWI	GCNNNNNNNGC	4 cut(s)	67, 76, 107, 277
BstNI	CCWGG	2 cut(s)	123, 147
BstSCI	CCNGG	2 cut(s)	121, 145
BstSFI	CTRYAG	2 cut(s)	198, 269
BstUI	CGCG	1 cut(s)	230
BstV1I	GCAGC	4 cut(s)	70, 119, 292, 295
BstX2I	RGATCY	1 cut(s)	159
BstYI	RGATCY	1 cut(s)	159
Bsu15I	ATCGAT	1 cut(s)	29
Bsu36I	CCTNAGG	1 cut(s)	288
BsuRI	GGCC	2 cut(s)	19, 126
BsuTUI	ATCGAT	1 cut(s)	29
BtgZI	GCGATG	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	152
BtsIMutI	CAGTG	2 cut(s)	54, 207
Cfr13I	GGNCC	3 cut(s)	13, 149, 221
ClaI	ATCGAT	1 cut(s)	29
CsiI	ACCWGGT	1 cut(s)	145
DdeI	CTNAG	3 cut(s)	87, 246, 288
DpnI	GATC	2 cut(s)	141, 161
DpnII	GATC	2 cut(s)	139, 159
EaeI	YGGCCR	1 cut(s)	17
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
Eco130I	CCWWGG	1 cut(s)	127
Eco47I	GGWCC	3 cut(s)	13, 149, 221
Eco57I	CTGAAG	1 cut(s)	224
Eco81I	CCTNAGG	1 cut(s)	288
EcoRII	CCWGG	2 cut(s)	121, 145
EcoT14I	CCWWGG	1 cut(s)	127
ErhI	CCWWGG	1 cut(s)	127
FaiI	YATR	4 cut(s)	254, 262, 459, 461
FaqI	GGGAC	1 cut(s)	306
FauI	CCCGC	1 cut(s)	235
FauNDI	CATATG	1 cut(s)	459
Fnu4HI	GCNGC	4 cut(s)	59, 108, 281, 284
FokI	GGATG	1 cut(s)	139
Fsp4HI	GCNGC	4 cut(s)	59, 108, 281, 284
FspBI	CTAG	1 cut(s)	207
GluI	GCNGC	4 cut(s)	59, 108, 281, 284
GsaI	CCCAGC	1 cut(s)	280
GsuI	CTGGAG	1 cut(s)	300
HaeIII	GGCC	2 cut(s)	19, 126
HapII	CCGG	1 cut(s)	16
HinfI	GANTC	3 cut(s)	31, 301, 313
HpaII	CCGG	1 cut(s)	16
Hpy188I	TCNGA	1 cut(s)	300
Hpy188III	TCNNGA	1 cut(s)	137
Hpy99I	CGWCG	1 cut(s)	217
HpyAV	CCTTC	1 cut(s)	267
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4V	TGCA	5 cut(s)	79, 173, 271, 427, 469
HpyF10VI	GCNNNNNNNGC	4 cut(s)	67, 76, 107, 277
HpyF3I	CTNAG	3 cut(s)	87, 246, 288
Kzo9I	GATC	2 cut(s)	139, 159
LmnI	GCTCC	2 cut(s)	115, 172
Lsp1109I	GCAGC	4 cut(s)	70, 119, 292, 295
LweI	GCATC	1 cut(s)	329
MabI	ACCWGGT	1 cut(s)	145
MaeI	CTAG	1 cut(s)	207
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	2 cut(s)	141, 161
MboI	GATC	2 cut(s)	139, 159
MboII	GAAGA	3 cut(s)	230, 317, 366
MflI	RGATCY	1 cut(s)	159
MlyI	GAGTC	1 cut(s)	307
MmeI	TCCRAC	1 cut(s)	380
MnlI	CCTC	8 cut(s)	33, 124, 234, 346, 363, 375, 396, 443
MseI	TTAA	1 cut(s)	234
MspI	CCGG	1 cut(s)	16
MspR9I	CCNGG	2 cut(s)	123, 147
Mva1269I	GAATGC	1 cut(s)	61
MvaI	CCWGG	2 cut(s)	123, 147
MvnI	CGCG	1 cut(s)	230
MwoI	GCNNNNNNNGC	4 cut(s)	67, 76, 107, 277
NdeI	CATATG	1 cut(s)	459
NdeII	GATC	2 cut(s)	139, 159
NmuCI	GTSAC	1 cut(s)	49
PctI	GAATGC	1 cut(s)	61
PfeI	GAWTC	2 cut(s)	31, 301
PkrI	GCNGC	4 cut(s)	60, 109, 282, 285
PleI	GAGTC	1 cut(s)	307
PpsI	GAGTC	1 cut(s)	307
Psp6I	CCWGG	2 cut(s)	121, 145
PspFI	CCCAGC	1 cut(s)	276
PspGI	CCWGG	2 cut(s)	121, 145
PspPI	GGNCC	3 cut(s)	13, 149, 221
PstI	CTGCAG	1 cut(s)	273
PsuI	RGATCY	1 cut(s)	159
SaqAI	TTAA	1 cut(s)	234
SatI	GCNGC	4 cut(s)	59, 108, 281, 284
Sau3AI	GATC	2 cut(s)	139, 159
Sau96I	GGNCC	3 cut(s)	13, 149, 221
SchI	GAGTC	1 cut(s)	307
ScrFI	CCNGG	2 cut(s)	123, 147
SetI	ASST	7 cut(s)	25, 112, 151, 169, 212, 388, 454
SexAI	ACCWGGT	1 cut(s)	145
SfaNI	GCATC	1 cut(s)	329
SfcI	CTRYAG	2 cut(s)	198, 269
SinI	GGWCC	3 cut(s)	13, 149, 221
SsiI	CCGC	1 cut(s)	228
SspMI	CTAG	1 cut(s)	207
StyD4I	CCNGG	2 cut(s)	121, 145
StyI	CCWWGG	1 cut(s)	127
TaaI	ACNGT	1 cut(s)	202
TaqI	TCGA	1 cut(s)	29
TfiI	GAWTC	2 cut(s)	31, 301
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TscAI	CASTG	2 cut(s)	54, 207
TseFI	GTSAC	1 cut(s)	49
TseI	GCWGC	4 cut(s)	58, 107, 280, 283
Tsp45I	GTSAC	1 cut(s)	49
TspDTI	ATGAA	2 cut(s)	249, 383
TspRI	CASTG	2 cut(s)	54, 207
VpaK11BI	GGWCC	3 cut(s)	13, 149, 221
XspI	CTAG	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.