RLG00000004908

Transcription termination and cleavage factor C-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0010390
Physical Location & Seq
Reverse (-)
63598014 .. 63600610
2597 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004908

Sequence Viewer

Length: 1149 bp
ATGGCGGGAAAGCAAATCTCCGGCGACGGCCTACCGGCGAATATAGCCGGAATGTCGAAGAACCAGCTCTACGAAATCATGTCTCAAATGAAGAGTCTGATAGAACAGAACCAGCAGCAAGCGAGGCAGATCCTCATCCAGAATCCGCTTCTCACCAAAGCGCTTTTCCAGGCACAAATTATGCTTGGAATGGTCCGGCCACCTCAATCGATTCCCACCATTCAGCCAGTGACGTCGCAGCAGTCGGTGCAACCAACTCAGCAGTCTAATGCTCTGGCAGCTCCCTCATTGCCAGGCCTTGGTGTTCAGGACCAACCAGGTCCATCCCAGATCCAAGCTCCTGCAAGAAAGCAATACCAAAACCAATCTACAGTGCCTAGCTCATCGGCTGCTCCTCCCGCGTTTAATCTTCAGTCTCAGCCTATGCCTTCGTATCCCCTGCAGACCCAGCAGCAGCCTAAGGGACATCTGAATCCCCAAATGACCCCGGCATCCCTTCCACAATCCTCTCAACTTCCAAATCCTCCAACACACCCTCATCATTCTTCACAGCCACCTCAACTTCATCAACCCCAAATGGCTTCTTACAACCAGTTGCAACAGCCATTACAGACGAGTGGTGGTCATCATATGCCCCTGCAACCACCATTGCCACCACAACCAAGACCTTCAATGCCTAACTACCACCATCAGTATCCCCCACAAATGGGGCCCAATTCGGGTTTCCAACATCCTTCACAATCCATGTTTCATTCAGGTACGAAACCCCCTACTAGTGTTGGGCCTTCATTTCCCCTGGGACAGCCACCACTTCCAAGTCACCCACCACCTCAATCCATGTATCAGGGAGGAGGTATGCATTTGGGTTCAGAGTACAGCAATCAAGTTGGAACTTCTATGCAAGCGGATAGAGGATCTTGGATGTCTGGCCCGCCAGAGAGTTCGTCAGTGCCACAGCTTTCAGGACCACCGTCATTAGTTCCTGGTCAAATGCCTGGCAGCCAGCCTGGTCGTGGCACAGCGTTAACCCCTGAGGAGGAGAAGGCGCTGCTTCAACAAGTGATGATTCTTACCCCAGAACAAATTAATCTCCTGCCTCCAGAACAGAAAAAACAAGTGCTACAGCTACAGCAGATAATGCGCCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CSTF2_hinge CSTF_C

Protein Analysis

383

Amino Acids

41.29

Weight (kDa)

9.45

Isoelectric Point (pI)

90.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CSTF2_hinge PF14327 13 - 67 7.9e-17 Hinge domain of cleavage stimulation factor subunit 2
CSTF_C PF14304 346 - 381 5.4e-08 Transcription termination and cleavage factor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 236
AccB7I CCANNNNNTGG 1 cut(s) 299
AccII CGCG 1 cut(s) 401
AciI CCGC 5 cut(s) 5, 146, 399, 905, 932
AclWI GGATC 3 cut(s) 124, 325, 922
AcoI YGGCCR 1 cut(s) 197
AcuI CTGAAG 1 cut(s) 395
AcyI GRCGYC 1 cut(s) 233
AfaI GTAC 2 cut(s) 760, 875
AfeI AGCGCT 1 cut(s) 162
AfiI CCNNNNNNNGG 6 cut(s) 299, 706, 707, 719, 1013, 1036
AgsI TTSAA 2 cut(s) 672, 1055
AhlI ACTAGT 1 cut(s) 773
AjnI CCWGG 7 cut(s) 168, 292, 316, 795, 982, 994, 1006
AjuI GAANNNNNNNTTGG 4 cut(s) 149, 181, 707, 739
AluBI AGCT 6 cut(s) 67, 281, 338, 381, 958, 1126
AluI AGCT 6 cut(s) 67, 281, 338, 381, 958, 1126
Alw26I GTCTC 2 cut(s) 87, 420
AlwI GGATC 3 cut(s) 124, 325, 922
Aor51HI AGCGCT 1 cut(s) 162
AoxI GGCC 6 cut(s) 28, 197, 295, 710, 782, 928
ApaI GGGCCC 1 cut(s) 714
ApeKI GCWGC 8 cut(s) 115, 238, 278, 389, 451, 454, 999, 1048
ArsI GACNNNNNNTTYG 2 cut(s) 79, 111
AseI ATTAAT 1 cut(s) 1086
AspLEI GCGC 3 cut(s) 163, 1048, 1143
AspS9I GGNCC 8 cut(s) 193, 310, 320, 710, 711, 782, 929, 965
AsuC2I CCSGG 1 cut(s) 488
AsuHPI GGTGA 2 cut(s) 145, 812
AvaII GGWCC 4 cut(s) 193, 310, 320, 965
AxyI CCTNAGG 2 cut(s) 459, 1032
BaeGI GKGCMC 1 cut(s) 714
BanII GRGCYC 1 cut(s) 714
BbvI GCAGC 8 cut(s) 127, 250, 290, 376, 463, 466, 1011, 1035
BccI CCATC 2 cut(s) 331, 696
BceAI ACGGC 1 cut(s) 43
BciT130I CCWGG 7 cut(s) 170, 294, 318, 797, 984, 996, 1008
BciVI GTATCC 2 cut(s) 444, 705
BcnI CCSGG 1 cut(s) 488
BcoDI GTCTC 2 cut(s) 87, 420
BcuI ACTAGT 1 cut(s) 773
BfaI CTAG 2 cut(s) 378, 774
BfmI CTRYAG 4 cut(s) 369, 440, 1121, 1127
BfoI RGCGCY 2 cut(s) 164, 1049
BfuI GTATCC 2 cut(s) 444, 705
BisI GCNGC 8 cut(s) 116, 239, 279, 390, 452, 455, 1000, 1049
BlsI GCNGC 8 cut(s) 117, 240, 280, 391, 453, 456, 1001, 1050
Bme1390I CCNGG 8 cut(s) 170, 294, 318, 488, 797, 984, 996, 1008
Bme18I GGWCC 4 cut(s) 193, 310, 320, 965
BmgT120I GGNCC 8 cut(s) 193, 310, 320, 710, 711, 782, 929, 965
BmiI GGNNCC 2 cut(s) 711, 712
BmrFI CCNGG 8 cut(s) 170, 294, 318, 488, 797, 984, 996, 1008
BmsI GCATC 1 cut(s) 500
BoxI GACNNNNGTC 1 cut(s) 970
BpmI CTGGAG 1 cut(s) 1083
BpuMI CCSGG 1 cut(s) 488
Bsa29I ATCGAT 1 cut(s) 209
BsaBI GATNNNNATC 1 cut(s) 134
BsaHI GRCGYC 1 cut(s) 233
BsaJI CCNNGG 4 cut(s) 298, 486, 795, 796
Bsc4I CCNNNNNNNGG 6 cut(s) 299, 706, 707, 719, 1013, 1036
Bse118I RCCGGY 1 cut(s) 34
Bse1I ACTGG 2 cut(s) 227, 592
Bse21I CCTNAGG 2 cut(s) 459, 1032
Bse3DI GCAATG 2 cut(s) 287, 647
Bse8I GATNNNNATC 1 cut(s) 134
BseBI CCWGG 7 cut(s) 170, 294, 318, 797, 984, 996, 1008
BseCI ATCGAT 1 cut(s) 209
BseDI CCNNGG 4 cut(s) 298, 486, 795, 796
BseGI GGATG 5 cut(s) 135, 323, 491, 730, 927
BseJI GATNNNNATC 1 cut(s) 134
BseLI CCNNNNNNNGG 6 cut(s) 299, 706, 707, 719, 1013, 1036
BseMI GCAATG 2 cut(s) 287, 647
BseMII CTCAG 3 cut(s) 272, 431, 1023
BseNI ACTGG 2 cut(s) 227, 592
BseRI GAGGAG 4 cut(s) 384, 864, 1049, 1052
BseSI GKGCMC 1 cut(s) 714
BseXI GCAGC 8 cut(s) 127, 250, 290, 376, 463, 466, 1011, 1035
BseYI CCCAGC 1 cut(s) 447
Bsh1236I CGCG 1 cut(s) 401
BshFI GGCC 6 cut(s) 30, 199, 297, 712, 784, 930
BshVI ATCGAT 1 cut(s) 209
BsiSI CCGG 5 cut(s) 21, 35, 48, 196, 488
BslFI GGGAC 2 cut(s) 477, 813
BslI CCNNNNNNNGG 6 cut(s) 299, 706, 707, 719, 1013, 1036
BsmAI GTCTC 2 cut(s) 87, 420
BsmFI GGGAC 2 cut(s) 477, 813
BsnI GGCC 6 cut(s) 30, 199, 297, 712, 784, 930
Bsp120I GGGCCC 1 cut(s) 710
Bsp1286I GDGCHC 1 cut(s) 714
Bsp143I GATC 3 cut(s) 129, 330, 914
BspACI CCGC 5 cut(s) 5, 146, 399, 905, 932
BspANI GGCC 6 cut(s) 30, 199, 297, 712, 784, 930
BspCNI CTCAG 3 cut(s) 271, 430, 1024
BspDI ATCGAT 1 cut(s) 209
BspFNI CGCG 1 cut(s) 401
BspLI GGNNCC 2 cut(s) 711, 712
BspMAI CTGCAG 1 cut(s) 444
BspPI GGATC 3 cut(s) 124, 325, 922
BsrDI GCAATG 2 cut(s) 287, 647
BsrFI RCCGGY 1 cut(s) 34
BsrI ACTGG 2 cut(s) 227, 592
BssAI RCCGGY 1 cut(s) 34
BssECI CCNNGG 4 cut(s) 298, 486, 795, 796
BssMI GATC 3 cut(s) 129, 330, 914
BssNI GRCGYC 1 cut(s) 233
BssT1I CCWWGG 1 cut(s) 298
Bst2UI CCWGG 7 cut(s) 170, 294, 318, 797, 984, 996, 1008
Bst4CI ACNGT 2 cut(s) 373, 972
Bst6I CTCTTC 1 cut(s) 86
BstACI GRCGYC 1 cut(s) 233
BstAPI GCANNNNNTGC 2 cut(s) 247, 1138
BstC8I GCNNGC 4 cut(s) 120, 903, 932, 1004
BstDEI CTNAG 4 cut(s) 258, 417, 459, 1032
BstF5I GGATG 5 cut(s) 135, 323, 491, 730, 927
BstFNI CGCG 1 cut(s) 401
BstH2I RGCGCY 2 cut(s) 164, 1049
BstHHI GCGC 3 cut(s) 163, 1048, 1143
BstKTI GATC 3 cut(s) 132, 333, 917
BstMAI GTCTC 2 cut(s) 87, 420
BstMBI GATC 3 cut(s) 129, 330, 914
BstMWI GCNNNNNNNGC 7 cut(s) 44, 124, 247, 278, 398, 448, 1138
BstNI CCWGG 7 cut(s) 170, 294, 318, 797, 984, 996, 1008
BstPAI GACNNNNGTC 1 cut(s) 970
BstSCI CCNGG 8 cut(s) 168, 292, 316, 486, 795, 982, 994, 1006
BstSFI CTRYAG 4 cut(s) 369, 440, 1121, 1127
BstSLI GKGCMC 1 cut(s) 714
BstUI CGCG 1 cut(s) 401
BstV1I GCAGC 8 cut(s) 127, 250, 290, 376, 463, 466, 1011, 1035
BstX2I RGATCY 3 cut(s) 129, 330, 914
BstYI RGATCY 3 cut(s) 129, 330, 914
Bsu15I ATCGAT 1 cut(s) 209
Bsu36I CCTNAGG 2 cut(s) 459, 1032
BsuI GTATCC 2 cut(s) 444, 705
BsuRI GGCC 6 cut(s) 30, 199, 297, 712, 784, 930
BsuTUI ATCGAT 1 cut(s) 209
BtsCI GGATG 5 cut(s) 135, 323, 491, 730, 927
BtsIMutI CAGTG 3 cut(s) 234, 378, 954
Cac8I GCNNGC 4 cut(s) 120, 903, 932, 1004
CfoI GCGC 3 cut(s) 163, 1048, 1143
Cfr10I RCCGGY 1 cut(s) 34
Cfr13I GGNCC 8 cut(s) 193, 310, 320, 710, 711, 782, 929, 965
ClaI ATCGAT 1 cut(s) 209
CsiI ACCWGGT 1 cut(s) 316
Csp6I GTAC 2 cut(s) 759, 874
CviAII CATG 3 cut(s) 79, 745, 838
CviQI GTAC 2 cut(s) 759, 874
DdeI CTNAG 4 cut(s) 258, 417, 459, 1032
DpnI GATC 3 cut(s) 131, 332, 916
DpnII GATC 3 cut(s) 129, 330, 914
EaeI YGGCCR 1 cut(s) 197
Eam1104I CTCTTC 1 cut(s) 86
EarI CTCTTC 1 cut(s) 86
Eco130I CCWWGG 1 cut(s) 298
Eco147I AGGCCT 1 cut(s) 297
Eco24I GRGCYC 1 cut(s) 714
Eco47I GGWCC 4 cut(s) 193, 310, 320, 965
Eco47III AGCGCT 1 cut(s) 162
Eco57I CTGAAG 1 cut(s) 395
Eco81I CCTNAGG 2 cut(s) 459, 1032
EcoO109I RGGNCCY 1 cut(s) 710
EcoRII CCWGG 7 cut(s) 168, 292, 316, 795, 982, 994, 1006
EcoT14I CCWWGG 1 cut(s) 298
EcoT22I ATGCAT 1 cut(s) 861
EcoT38I GRGCYC 1 cut(s) 714
ErhI CCWWGG 1 cut(s) 298
FaeI CATG 3 cut(s) 82, 748, 841
FaqI GGGAC 2 cut(s) 477, 813
FatI CATG 3 cut(s) 78, 744, 837
FauI CCCGC 2 cut(s) 406, 939
FauNDI CATATG 1 cut(s) 630
Fnu4HI GCNGC 8 cut(s) 116, 239, 279, 390, 452, 455, 1000, 1049
FokI GGATG 5 cut(s) 122, 310, 478, 717, 934
FriOI GRGCYC 1 cut(s) 714
Fsp4HI GCNGC 8 cut(s) 116, 239, 279, 390, 452, 455, 1000, 1049
FspBI CTAG 2 cut(s) 378, 774
GlaI GCGC 3 cut(s) 162, 1047, 1142
GluI GCNGC 8 cut(s) 116, 239, 279, 390, 452, 455, 1000, 1049
GsaI CCCAGC 1 cut(s) 451
GsuI CTGGAG 1 cut(s) 1083
HaeII RGCGCY 2 cut(s) 164, 1049
HaeIII GGCC 6 cut(s) 30, 199, 297, 712, 784, 930
HapII CCGG 5 cut(s) 21, 35, 48, 196, 488
HhaI GCGC 3 cut(s) 163, 1048, 1143
Hin1I GRCGYC 1 cut(s) 233
Hin1II CATG 3 cut(s) 82, 748, 841
Hin6I GCGC 3 cut(s) 161, 1046, 1141
HinP1I GCGC 3 cut(s) 161, 1046, 1141
HincII GTYRAC 1 cut(s) 1026
HindII GTYRAC 1 cut(s) 1026
HinfI GANTC 5 cut(s) 94, 142, 211, 472, 1066
HpaI GTTAAC 1 cut(s) 1026
HpaII CCGG 5 cut(s) 21, 35, 48, 196, 488
HphI GGTGA 2 cut(s) 145, 812
Hpy166II GTNNAC 1 cut(s) 1026
Hpy188I TCNGA 3 cut(s) 99, 471, 871
Hpy188III TCNNGA 4 cut(s) 139, 308, 963, 1100
Hpy8I GTNNAC 1 cut(s) 1026
Hpy99I CGWCG 2 cut(s) 29, 238
HpyAV CCTTC 6 cut(s) 438, 506, 678, 744, 795, 1036
HpyCH4III ACNGT 2 cut(s) 373, 972
HpyCH4IV ACGT 1 cut(s) 233
HpyCH4V TGCA 7 cut(s) 250, 344, 442, 598, 640, 859, 901
HpyF10VI GCNNNNNNNGC 7 cut(s) 44, 124, 247, 278, 398, 448, 1138
HpyF3I CTNAG 4 cut(s) 258, 417, 459, 1032
HpySE526I ACGT 1 cut(s) 233
Hsp92I GRCGYC 1 cut(s) 233
Hsp92II CATG 3 cut(s) 82, 748, 841
HspAI GCGC 3 cut(s) 161, 1046, 1141
KspAI GTTAAC 1 cut(s) 1026
Kzo9I GATC 3 cut(s) 129, 330, 914
LmnI GCTCC 3 cut(s) 286, 343, 397
Lsp1109I GCAGC 8 cut(s) 127, 250, 290, 376, 463, 466, 1011, 1035
LweI GCATC 1 cut(s) 500
MabI ACCWGGT 1 cut(s) 316
MaeI CTAG 2 cut(s) 378, 774
MaeII ACGT 1 cut(s) 233
MaeIII GTNAC 2 cut(s) 229, 818
MalI GATC 3 cut(s) 131, 332, 916
MboI GATC 3 cut(s) 129, 330, 914
MboII GAAGA 4 cut(s) 70, 103, 401, 537
MflI RGATCY 3 cut(s) 129, 330, 914
MhlI GDGCHC 1 cut(s) 714
MluCI AATT 3 cut(s) 177, 715, 1083
MlyI GAGTC 1 cut(s) 103
MmeI TCCRAC 3 cut(s) 551, 751, 868
Mph1103I ATGCAT 1 cut(s) 861
MseI TTAA 3 cut(s) 405, 1025, 1086
MspI CCGG 5 cut(s) 21, 35, 48, 196, 488
MspR9I CCNGG 8 cut(s) 170, 294, 318, 488, 797, 984, 996, 1008
MvaI CCWGG 7 cut(s) 170, 294, 318, 797, 984, 996, 1008
MvnI CGCG 1 cut(s) 401
MwoI GCNNNNNNNGC 7 cut(s) 44, 124, 247, 278, 398, 448, 1138
NciI CCSGG 1 cut(s) 488
NdeI CATATG 1 cut(s) 630
NdeII GATC 3 cut(s) 129, 330, 914
NlaIII CATG 3 cut(s) 82, 748, 841
NlaIV GGNNCC 2 cut(s) 711, 712
NmuCI GTSAC 2 cut(s) 229, 818
NsiI ATGCAT 1 cut(s) 861
PasI CCCWGGG 1 cut(s) 796
PceI AGGCCT 1 cut(s) 297
PfeI GAWTC 4 cut(s) 142, 211, 472, 1066
PflMI CCANNNNNTGG 1 cut(s) 299
PkrI GCNGC 8 cut(s) 117, 240, 280, 391, 453, 456, 1001, 1050
PleI GAGTC 1 cut(s) 102
PpsI GAGTC 1 cut(s) 102
PshAI GACNNNNGTC 1 cut(s) 970
PshBI ATTAAT 1 cut(s) 1086
Psp6I CCWGG 7 cut(s) 168, 292, 316, 795, 982, 994, 1006
PspFI CCCAGC 1 cut(s) 447
PspGI CCWGG 7 cut(s) 168, 292, 316, 795, 982, 994, 1006
PspN4I GGNNCC 2 cut(s) 711, 712
PspOMI GGGCCC 1 cut(s) 710
PspPI GGNCC 8 cut(s) 193, 310, 320, 710, 711, 782, 929, 965
PsrI GAACNNNNNNTAC 2 cut(s) 53, 85
PstI CTGCAG 1 cut(s) 444
PsuI RGATCY 3 cut(s) 129, 330, 914
RsaI GTAC 2 cut(s) 760, 875
RsaNI GTAC 2 cut(s) 759, 874
SaqAI TTAA 3 cut(s) 405, 1025, 1086
SatI GCNGC 8 cut(s) 116, 239, 279, 390, 452, 455, 1000, 1049
Sau3AI GATC 3 cut(s) 129, 330, 914
Sau96I GGNCC 8 cut(s) 193, 310, 320, 710, 711, 782, 929, 965
SchI GAGTC 1 cut(s) 103
ScrFI CCNGG 8 cut(s) 170, 294, 318, 488, 797, 984, 996, 1008
SduI GDGCHC 1 cut(s) 714
SexAI ACCWGGT 1 cut(s) 316
SfaNI GCATC 1 cut(s) 500
SfcI CTRYAG 4 cut(s) 369, 440, 1121, 1127
SinI GGWCC 4 cut(s) 193, 310, 320, 965
SpeI ACTAGT 1 cut(s) 773
Sse9I AATT 3 cut(s) 177, 715, 1083
SseBI AGGCCT 1 cut(s) 297
SsiI CCGC 5 cut(s) 5, 146, 399, 905, 932
SspMI CTAG 2 cut(s) 378, 774
StuI AGGCCT 1 cut(s) 297
StyD4I CCNGG 8 cut(s) 168, 292, 316, 486, 795, 982, 994, 1006
StyI CCWWGG 1 cut(s) 298
TaaI ACNGT 2 cut(s) 373, 972
TaiI ACGT 1 cut(s) 236
TaqI TCGA 2 cut(s) 56, 209
TasI AATT 3 cut(s) 177, 715, 1083
TatI WGTACW 1 cut(s) 873
TfiI GAWTC 4 cut(s) 142, 211, 472, 1066
Tru1I TTAA 3 cut(s) 405, 1025, 1086
Tru9I TTAA 3 cut(s) 405, 1025, 1086
TscAI CASTG 3 cut(s) 234, 378, 954
TseFI GTSAC 2 cut(s) 229, 818
TseI GCWGC 8 cut(s) 115, 238, 278, 389, 451, 454, 999, 1048
Tsp45I GTSAC 2 cut(s) 229, 818
TspDTI ATGAA 4 cut(s) 104, 554, 740, 777
TspRI CASTG 3 cut(s) 234, 378, 954
Van91I CCANNNNNTGG 1 cut(s) 299
VpaK11BI GGWCC 4 cut(s) 193, 310, 320, 965
VspI ATTAAT 1 cut(s) 1086
XcmI CCANNNNNNNNNTGG 1 cut(s) 1010
XspI CTAG 2 cut(s) 378, 774
ZraI GACGTC 1 cut(s) 234
Zsp2I ATGCAT 1 cut(s) 861
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.