MD14G1227000.v1.1

Transcription termination and cleavage factor C-terminal

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Forward (+)
30822062 .. 30824946
2885 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1227000.v1.1.491

Sequence Viewer

Length: 1191 bp
ATGGCGGGAAAGCAACTCTCAGGCGACGGCCTACCGGCGAACATCGCCGGAATGTCGAAGAACCAGCTTTACGACATCATGTCTCAAATGAAGAATTTGATAGAACAGAACCAGCAGCAGGCGAGGCAGATCCTCATTCAGAATCCGCCCCTCACCAAAGCCCTTTTCCAGGCACAGATTATGCTTGGAATGGTGCGGCCACCGCAAGTGATTCCCAGCATTCAGCCACTGACGTCACATAATTCTCAGCAGTCGACACAACAAACTCAGCAGCCAAGCACTCAGGCTGCTCCCTCATTGCCCGGTCAAGTTGGTTTGCAGGACCAAACTGGGCCATCTCAGATCCAAGCTCCTCCGAGAAAGCAATACCAAAACCAACCGGCAATGCCTGGTTCATCAGCTGGTGCTCCATCTATAAATGTTCAGTCTCAGCCTATGCCTTCACGTCCCCTGCTGAGCCCACAGCAGCCTAAGGGACATCTAAATCCTCAAATGACCCAGACTTCTCTTCCACAGTCCTCTCAACTCCCAAATATGCCTGCACATCCTCTTCATTCTTCTTCACAGCCACCTTCGCTTCATCAAACCCAAATGCCTGCTGTTTCCAGCCAGTTGCAACAGTCATTACAGACATCTGGAGTGTCTTCTCATATGCCATTGCAACCACCATTGCCACCACAACCAAGACCACCTTCAATGCCTAACTTCCATCACCAGTATCCGCCGCAAATGGGGCCCAACATGGGTTACCAACATGCTCCTCCCCAACATCTTTCACAATCCATGTTTCATTCAGGTACGAAACCCCCTGTTAGCGCTGGGCCTTCATTCCCACAGGGACAACCACCACTTCCAAGTCAACCACCACCTCAATCTATGTATCAGGGTGGAGGCATGCATTTAGGTTCAGAGTTCAACAATCAAGCTGGATCTTCCATGCAAGTTGATAGAGGATCGTGGATGTCCGGTCCACCAGAGAGTTCGACAGTGCCACAACTTTCAGGACCGCCACCGTTAGGTCCTGGTCAAATGGGCCCTGGCGGCCAGCCTCCTCGCCCGGCACCGTTGTCCCCTGAGATGGAGAAGGCACTGCTTCAGCAGGTCATGAGCCTCACACCGGAACAAATTAACCTCCTGCCTCCAGAACAAAGGAATCAGGTGCTACAGCTACAGCAGATACTGCGCCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

397

Amino Acids

42.57

Weight (kDa)

9.79

Isoelectric Point (pI)

92.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CSTF2_hinge PF14327 9 - 69 3.3e-17 Hinge domain of cleavage stimulation factor subunit 2
CSTF_C PF14304 362 - 396 1e-09 Transcription termination and cleavage factor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 236
Acc36I ACCTGC 1 cut(s) 1090
AccB1I GGYRCC 1 cut(s) 1060
AccI GTMKAC 1 cut(s) 254
AciI CCGC 8 cut(s) 5, 146, 196, 203, 722, 725, 1007, 1041
AclWI GGATC 4 cut(s) 124, 337, 937, 961
AcoI YGGCCR 2 cut(s) 197, 1042
AcsI RAATTY 1 cut(s) 94
AcuI CTGAAG 1 cut(s) 1079
AcyI GRCGYC 1 cut(s) 233
AfaI GTAC 1 cut(s) 799
AfeI AGCGCT 1 cut(s) 817
AfiI CCNNNNNNNGG 7 cut(s) 118, 169, 731, 743, 1016, 1078, 1117
AgsI TTSAA 2 cut(s) 696, 916
AhdI GACNNNNNGTC 1 cut(s) 79
AjiI CACGTC 1 cut(s) 446
AjnI CCWGG 4 cut(s) 168, 388, 1021, 1036
AjuI GAANNNNNNNTTGG 4 cut(s) 149, 181, 676, 708
AluBI AGCT 5 cut(s) 67, 350, 401, 926, 1168
AluI AGCT 5 cut(s) 67, 350, 401, 926, 1168
Alw21I GWGCWC 1 cut(s) 409
Alw26I GTCTC 2 cut(s) 87, 432
AlwI GGATC 4 cut(s) 124, 337, 937, 961
AlwNI CAGNNNCTG 2 cut(s) 229, 1180
Aor51HI AGCGCT 1 cut(s) 817
AoxI GGCC 7 cut(s) 28, 197, 332, 734, 821, 1033, 1042
ApaI GGGCCC 2 cut(s) 738, 1037
ApeKI GCWGC 4 cut(s) 115, 271, 287, 466
ApoI RAATTY 1 cut(s) 94
AspLEI GCGC 2 cut(s) 818, 1185
AsuC2I CCSGG 2 cut(s) 303, 1058
AsuHPI GGTGA 2 cut(s) 145, 704
AvaII GGWCC 4 cut(s) 322, 968, 1004, 1019
AxyI CCTNAGG 1 cut(s) 471
BaeGI GKGCMC 2 cut(s) 738, 1037
BanI GGYRCC 1 cut(s) 1060
BanII GRGCYC 3 cut(s) 461, 738, 1037
BbsI GAAGAC 1 cut(s) 636
Bbv12I GWGCWC 1 cut(s) 409
BbvI GCAGC 4 cut(s) 127, 274, 283, 478
BccI CCATC 4 cut(s) 343, 418, 717, 1072
BceAI ACGGC 1 cut(s) 43
BciT130I CCWGG 4 cut(s) 170, 390, 1023, 1038
BciVI GTATCC 1 cut(s) 729
BcnI CCSGG 2 cut(s) 303, 1058
BcoDI GTCTC 2 cut(s) 87, 432
BfmI CTRYAG 2 cut(s) 1163, 1169
BfoI RGCGCY 1 cut(s) 819
BfuAI ACCTGC 1 cut(s) 1090
BfuI GTATCC 1 cut(s) 729
BglI GCCNNNNNGGC 1 cut(s) 1041
BisI GCNGC 7 cut(s) 116, 197, 272, 288, 467, 725, 1042
BlpI GCTNAGC 1 cut(s) 455
BlsI GCNGC 7 cut(s) 117, 198, 273, 289, 468, 726, 1043
Bme1390I CCNGG 6 cut(s) 170, 303, 390, 1023, 1038, 1058
Bme18I GGWCC 4 cut(s) 322, 968, 1004, 1019
BmeRI GACNNNNNGTC 1 cut(s) 79
BmgBI CACGTC 1 cut(s) 446
BmiI GGNNCC 4 cut(s) 735, 736, 1035, 1062
BmrFI CCNGG 6 cut(s) 170, 303, 390, 1023, 1038, 1058
BmrI ACTGGG 1 cut(s) 339
BmuI ACTGGG 1 cut(s) 339
BpiI GAAGAC 1 cut(s) 636
BpmI CTGGAG 2 cut(s) 657, 1125
Bpu1102I GCTNAGC 1 cut(s) 455
BpuMI CCSGG 2 cut(s) 303, 1058
BsaHI GRCGYC 1 cut(s) 233
BsaJI CCNNGG 1 cut(s) 1036
BsaWI WCCGGW 2 cut(s) 965, 1117
Bsc4I CCNNNNNNNGG 7 cut(s) 118, 169, 731, 743, 1016, 1078, 1117
Bse118I RCCGGY 2 cut(s) 34, 379
Bse1I ACTGG 3 cut(s) 334, 610, 715
Bse21I CCTNAGG 1 cut(s) 471
Bse3DI GCAATG 4 cut(s) 296, 390, 656, 668
BseBI CCWGG 4 cut(s) 170, 390, 1023, 1038
BseDI CCNNGG 1 cut(s) 1036
BseGI GGATG 2 cut(s) 544, 966
BseLI CCNNNNNNNGG 7 cut(s) 118, 169, 731, 743, 1016, 1078, 1117
BseMI GCAATG 4 cut(s) 296, 390, 656, 668
BseMII CTCAG 8 cut(s) 33, 260, 281, 296, 353, 443, 446, 1065
BseNI ACTGG 3 cut(s) 334, 610, 715
BseRI GAGGAG 3 cut(s) 342, 750, 1041
BseSI GKGCMC 2 cut(s) 738, 1037
BseXI GCAGC 4 cut(s) 127, 274, 283, 478
BseYI CCCAGC 2 cut(s) 215, 818
BsgI GTGCAG 1 cut(s) 525
BshFI GGCC 7 cut(s) 30, 199, 334, 736, 823, 1035, 1044
BshNI GGYRCC 1 cut(s) 1060
BsiHKAI GWGCWC 1 cut(s) 409
BsiSI CCGG 7 cut(s) 35, 48, 303, 380, 966, 1058, 1118
BslFI GGGAC 4 cut(s) 432, 489, 852, 1054
BslI CCNNNNNNNGG 7 cut(s) 118, 169, 731, 743, 1016, 1078, 1117
BsmAI GTCTC 2 cut(s) 87, 432
BsmFI GGGAC 4 cut(s) 432, 489, 852, 1054
BsmI GAATGC 1 cut(s) 219
BsnI GGCC 7 cut(s) 30, 199, 334, 736, 823, 1035, 1044
Bsp120I GGGCCC 2 cut(s) 734, 1033
Bsp1286I GDGCHC 4 cut(s) 409, 461, 738, 1037
Bsp143I GATC 4 cut(s) 129, 342, 929, 953
Bsp1720I GCTNAGC 1 cut(s) 455
BspACI CCGC 8 cut(s) 5, 146, 196, 203, 722, 725, 1007, 1041
BspANI GGCC 7 cut(s) 30, 199, 334, 736, 823, 1035, 1044
BspCNI CTCAG 8 cut(s) 32, 259, 280, 295, 352, 442, 447, 1066
BspHI TCATGA 1 cut(s) 1104
BspLI GGNNCC 4 cut(s) 735, 736, 1035, 1062
BspMI ACCTGC 1 cut(s) 1090
BspPI GGATC 4 cut(s) 124, 337, 937, 961
BspT107I GGYRCC 1 cut(s) 1060
BsrDI GCAATG 4 cut(s) 296, 390, 656, 668
BsrFI RCCGGY 2 cut(s) 34, 379
BsrI ACTGG 3 cut(s) 334, 610, 715
BssAI RCCGGY 2 cut(s) 34, 379
BssECI CCNNGG 1 cut(s) 1036
BssMI GATC 4 cut(s) 129, 342, 929, 953
BssNI GRCGYC 1 cut(s) 233
Bst2UI CCWGG 4 cut(s) 170, 390, 1023, 1038
Bst4CI ACNGT 5 cut(s) 516, 621, 988, 1014, 1065
Bst6I CTCTTC 2 cut(s) 513, 555
BstACI GRCGYC 1 cut(s) 233
BstAPI GCANNNNNTGC 1 cut(s) 1180
BstC8I GCNNGC 5 cut(s) 120, 540, 597, 896, 1046
BstDEI CTNAG 9 cut(s) 19, 246, 267, 282, 339, 429, 455, 471, 1074
BstEII GGTNACC 1 cut(s) 746
BstENI CCTNNNNNAGG 1 cut(s) 167
BstF5I GGATG 2 cut(s) 544, 966
BstH2I RGCGCY 1 cut(s) 819
BstHHI GCGC 2 cut(s) 818, 1185
BstKTI GATC 4 cut(s) 132, 345, 932, 956
BstMAI GTCTC 2 cut(s) 87, 432
BstMBI GATC 4 cut(s) 129, 342, 929, 953
BstMWI GCNNNNNNNGC 7 cut(s) 44, 124, 202, 574, 733, 1041, 1180
BstNI CCWGG 4 cut(s) 170, 390, 1023, 1038
BstNSI RCATGY 2 cut(s) 758, 898
BstPI GGTNACC 1 cut(s) 746
BstSCI CCNGG 6 cut(s) 168, 301, 388, 1021, 1036, 1056
BstSFI CTRYAG 2 cut(s) 1163, 1169
BstSLI GKGCMC 2 cut(s) 738, 1037
BstV1I GCAGC 4 cut(s) 127, 274, 283, 478
BstV2I GAAGAC 1 cut(s) 636
BstX2I RGATCY 3 cut(s) 129, 342, 929
BstYI RGATCY 3 cut(s) 129, 342, 929
Bsu36I CCTNAGG 1 cut(s) 471
BsuI GTATCC 1 cut(s) 729
BsuRI GGCC 7 cut(s) 30, 199, 334, 736, 823, 1035, 1044
BtgZI GCGATG 1 cut(s) 28
BtrI CACGTC 1 cut(s) 446
BtsCI GGATG 2 cut(s) 544, 966
BtsI GCAGTG 1 cut(s) 1088
BtsIMutI CAGTG 3 cut(s) 227, 993, 1088
BveI ACCTGC 1 cut(s) 1090
Cac8I GCNNGC 5 cut(s) 120, 540, 597, 896, 1046
CaiI CAGNNNCTG 2 cut(s) 229, 1180
CciI TCATGA 1 cut(s) 1104
CfoI GCGC 2 cut(s) 818, 1185
Cfr10I RCCGGY 2 cut(s) 34, 379
Csp6I GTAC 1 cut(s) 798
CviAII CATG 7 cut(s) 79, 742, 755, 784, 895, 937, 1105
CviQI GTAC 1 cut(s) 798
DdeI CTNAG 9 cut(s) 19, 246, 267, 282, 339, 429, 455, 471, 1074
DpnI GATC 4 cut(s) 131, 344, 931, 955
DpnII GATC 4 cut(s) 129, 342, 929, 953
DriI GACNNNNNGTC 1 cut(s) 79
EaeI YGGCCR 2 cut(s) 197, 1042
Eam1104I CTCTTC 2 cut(s) 513, 555
Eam1105I GACNNNNNGTC 1 cut(s) 79
EarI CTCTTC 2 cut(s) 513, 555
EciI GGCGGA 2 cut(s) 135, 711
Eco24I GRGCYC 3 cut(s) 461, 738, 1037
Eco47I GGWCC 4 cut(s) 322, 968, 1004, 1019
Eco47III AGCGCT 1 cut(s) 817
Eco57I CTGAAG 1 cut(s) 1079
Eco81I CCTNAGG 1 cut(s) 471
Eco91I GGTNACC 1 cut(s) 746
EcoNI CCTNNNNNAGG 1 cut(s) 167
EcoO109I RGGNCCY 3 cut(s) 734, 1019, 1034
EcoO65I GGTNACC 1 cut(s) 746
EcoRII CCWGG 4 cut(s) 168, 388, 1021, 1036
EcoT22I ATGCAT 1 cut(s) 900
EcoT38I GRGCYC 3 cut(s) 461, 738, 1037
FaeI CATG 7 cut(s) 82, 745, 758, 787, 898, 940, 1108
FalI AAGNNNNNCTT 2 cut(s) 676, 708
FaqI GGGAC 4 cut(s) 432, 489, 852, 1054
FatI CATG 7 cut(s) 78, 741, 754, 783, 894, 936, 1104
FauNDI CATATG 1 cut(s) 651
FblI GTMKAC 1 cut(s) 254
Fnu4HI GCNGC 7 cut(s) 116, 197, 272, 288, 467, 725, 1042
FokI GGATG 2 cut(s) 531, 973
FriOI GRGCYC 3 cut(s) 461, 738, 1037
Fsp4HI GCNGC 7 cut(s) 116, 197, 272, 288, 467, 725, 1042
GlaI GCGC 2 cut(s) 817, 1184
GluI GCNGC 7 cut(s) 116, 197, 272, 288, 467, 725, 1042
GsaI CCCAGC 2 cut(s) 219, 822
GsuI CTGGAG 2 cut(s) 657, 1125
HaeII RGCGCY 1 cut(s) 819
HaeIII GGCC 7 cut(s) 30, 199, 334, 736, 823, 1035, 1044
HapII CCGG 7 cut(s) 35, 48, 303, 380, 966, 1058, 1118
HhaI GCGC 2 cut(s) 818, 1185
Hin1I GRCGYC 1 cut(s) 233
Hin1II CATG 7 cut(s) 82, 745, 758, 787, 898, 940, 1108
Hin6I GCGC 2 cut(s) 816, 1183
HinP1I GCGC 2 cut(s) 816, 1183
HincII GTYRAC 2 cut(s) 255, 860
HindII GTYRAC 2 cut(s) 255, 860
HinfI GANTC 3 cut(s) 142, 211, 1153
HpaII CCGG 7 cut(s) 35, 48, 303, 380, 966, 1058, 1118
HphI GGTGA 2 cut(s) 145, 704
Hpy166II GTNNAC 3 cut(s) 255, 860, 971
Hpy188I TCNGA 4 cut(s) 141, 342, 357, 910
Hpy188III TCNNGA 4 cut(s) 636, 1002, 1105, 1142
Hpy8I GTNNAC 3 cut(s) 255, 860, 971
Hpy99I CGWCG 1 cut(s) 29
HpyAV CCTTC 5 cut(s) 450, 582, 702, 834, 1078
HpyCH4III ACNGT 5 cut(s) 516, 621, 988, 1014, 1065
HpyCH4IV ACGT 2 cut(s) 233, 445
HpyCH4V TGCA 6 cut(s) 319, 542, 616, 661, 898, 940
HpyF10VI GCNNNNNNNGC 7 cut(s) 44, 124, 202, 574, 733, 1041, 1180
HpyF3I CTNAG 9 cut(s) 19, 246, 267, 282, 339, 429, 455, 471, 1074
HpySE526I ACGT 2 cut(s) 233, 445
Hsp92I GRCGYC 1 cut(s) 233
Hsp92II CATG 7 cut(s) 82, 745, 758, 787, 898, 940, 1108
HspAI GCGC 2 cut(s) 816, 1183
Kzo9I GATC 4 cut(s) 129, 342, 929, 953
LmnI GCTCC 4 cut(s) 295, 355, 412, 763
Lsp1109I GCAGC 4 cut(s) 127, 274, 283, 478
MaeII ACGT 2 cut(s) 233, 445
MaeIII GTNAC 2 cut(s) 234, 746
MalI GATC 4 cut(s) 131, 344, 931, 955
MboI GATC 4 cut(s) 129, 342, 929, 953
MboII GAAGA 8 cut(s) 70, 103, 500, 542, 549, 552, 636, 924
MflI RGATCY 3 cut(s) 129, 342, 929
MhlI GDGCHC 4 cut(s) 409, 461, 738, 1037
MluCI AATT 3 cut(s) 94, 241, 1125
Mph1103I ATGCAT 1 cut(s) 900
MseI TTAA 1 cut(s) 1128
MspA1I CMGCKG 1 cut(s) 401
MspI CCGG 7 cut(s) 35, 48, 303, 380, 966, 1058, 1118
MspR9I CCNGG 6 cut(s) 170, 303, 390, 1023, 1038, 1058
Mva1269I GAATGC 1 cut(s) 219
MvaI CCWGG 4 cut(s) 170, 390, 1023, 1038
MwoI GCNNNNNNNGC 7 cut(s) 44, 124, 202, 574, 733, 1041, 1180
NciI CCSGG 2 cut(s) 303, 1058
NdeI CATATG 1 cut(s) 651
NdeII GATC 4 cut(s) 129, 342, 929, 953
NlaIII CATG 7 cut(s) 82, 745, 758, 787, 898, 940, 1108
NlaIV GGNNCC 4 cut(s) 735, 736, 1035, 1062
NmuCI GTSAC 1 cut(s) 234
NsiI ATGCAT 1 cut(s) 900
NspI RCATGY 2 cut(s) 758, 898
PaeI GCATGC 1 cut(s) 898
PagI TCATGA 1 cut(s) 1104
PctI GAATGC 1 cut(s) 219
PfeI GAWTC 3 cut(s) 142, 211, 1153
PkrI GCNGC 7 cut(s) 117, 198, 273, 289, 468, 726, 1043
PpuMI RGGWCCY 1 cut(s) 1019
Psp5II RGGWCCY 1 cut(s) 1019
Psp6I CCWGG 4 cut(s) 168, 388, 1021, 1036
PspEI GGTNACC 1 cut(s) 746
PspFI CCCAGC 2 cut(s) 215, 818
PspGI CCWGG 4 cut(s) 168, 388, 1021, 1036
PspN4I GGNNCC 4 cut(s) 735, 736, 1035, 1062
PspOMI GGGCCC 2 cut(s) 734, 1033
PspPPI RGGWCCY 1 cut(s) 1019
PsrI GAACNNNNNNTAC 2 cut(s) 53, 85
PstNI CAGNNNCTG 2 cut(s) 229, 1180
PsuI RGATCY 3 cut(s) 129, 342, 929
PvuII CAGCTG 1 cut(s) 401
RsaI GTAC 1 cut(s) 799
RsaNI GTAC 1 cut(s) 798
SalI GTCGAC 1 cut(s) 253
SaqAI TTAA 1 cut(s) 1128
SatI GCNGC 7 cut(s) 116, 197, 272, 288, 467, 725, 1042
Sau3AI GATC 4 cut(s) 129, 342, 929, 953
ScrFI CCNGG 6 cut(s) 170, 303, 390, 1023, 1038, 1058
SduI GDGCHC 4 cut(s) 409, 461, 738, 1037
SfcI CTRYAG 2 cut(s) 1163, 1169
SfiI GGCCNNNNNGGCC 1 cut(s) 1041
SinI GGWCC 4 cut(s) 322, 968, 1004, 1019
SphI GCATGC 1 cut(s) 898
Sse9I AATT 3 cut(s) 94, 241, 1125
SsiI CCGC 8 cut(s) 5, 146, 196, 203, 722, 725, 1007, 1041
StyD4I CCNGG 6 cut(s) 168, 301, 388, 1021, 1036, 1056
TaaI ACNGT 5 cut(s) 516, 621, 988, 1014, 1065
TaiI ACGT 2 cut(s) 236, 448
TaqI TCGA 3 cut(s) 56, 254, 983
TasI AATT 3 cut(s) 94, 241, 1125
TauI GCSGC 3 cut(s) 199, 727, 1044
TfiI GAWTC 3 cut(s) 142, 211, 1153
Tru1I TTAA 1 cut(s) 1128
Tru9I TTAA 1 cut(s) 1128
TscAI CASTG 3 cut(s) 234, 993, 1095
TseFI GTSAC 1 cut(s) 234
TseI GCWGC 4 cut(s) 115, 271, 287, 466
Tsp45I GTSAC 1 cut(s) 234
TspDTI ATGAA 6 cut(s) 104, 384, 542, 569, 779, 816
TspRI CASTG 3 cut(s) 234, 993, 1095
VpaK11BI GGWCC 4 cut(s) 322, 968, 1004, 1019
XagI CCTNNNNNAGG 1 cut(s) 167
XapI RAATTY 1 cut(s) 94
XceI RCATGY 2 cut(s) 758, 898
XmiI GTMKAC 1 cut(s) 254
ZraI GACGTC 1 cut(s) 234
Zsp2I ATGCAT 1 cut(s) 900
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.