Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010190.1

Orthogroup ID

OG0010390

Physical Location & Seq

Genomic Coordinates Reverse (-)

75601 .. 78213

Gene Structure 2613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010190.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

atggcgggaaagcaaatctccggcgacggcctaccggcgaatatagccggaatgtcgaagaaccagctctacgaaatcatgtctcaaatgaagagtctgatagaacagaaccagcagcaagcgaggcagatcctcatacagaatccgcttctcaccaaagcgcttttccaggcacaaattatgcttggaatggtccggccacctcaattgattcccaccattcagccagtgacgtcgcagcattcacagcagtcggtgcaaccaactcagcagtctaatgctctggcagctccctcattgcctggccttggtgttcaggatcaaccaggtccatcccagatccaagctcctgcaagaaagcaataccaaaaccaatctacagtgcctagctcgtcggctggtcctcctgcgtttaatcttcagtctcagcctatgccttcatatcccctgcagacccagcagcagcctaagggacatctgaatccccaaatgactccagtatctcttccacaatcctctcaacttccaaatcctccaacacaccctcatcattcttcacagccacctcaacttcatcaaacccaaatggcttcttacaaccagttgcaacagccattacagacaagtggaggtcatcatatgcccctgcaaccaccattgccaccacaaccaagaccttcaatgcctaactaccaccatcagtatcccccacaaatggggcccaattcgggtttccaacatccttcacaatccatgtttcattcaagtacgaaaccccctactagtgttgggccttcatttcccctgggacagccaccacttccaagtcacccaccacctcaatccatgtatcagggaggaggtatgcatttgggttcagagtacagtaatcaagttggaacttctatgcaagcagatagaggatcttggatgtctggcccgccagagagttcgtcagtgccacagctttcaggaccaccatcattagttcctggtcaaatgcctggcagccagcctggtcgtggcacagcgttaacgcctgacgaggagaaggcactgcttcaacaagtgatgattcttaccccagaacaaattaatctcctgcctccagaacagaaaaaacaagtgctacagctacagcagataatgcgccaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CSTF2_hinge CSTF_C

Protein Analysis

385

Amino Acids

41.71

Weight (kDa)

9.45

Isoelectric Point (pI)

86.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73840 AT1G73840
fragaria_vesca	FvH4_5g12080 FvH4_5g12080 FvH4_5g12080 FvH4_5g12080
malus_domestica	MD14G1227000.v1.1
prunus_persica	Prupe.5G221700_v2.0.a1
pyrus_communis	pycom14g18840
rosa_chinensis	RchiOBHm_Chr7g0185491
rosa_laevigata	RLG00000004908
rosa_multiflora	Rmu_sc0010190.1_g000021 Rmu_sc0032992.1_g000001 Rmu_sc0042045.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268890
rosa_rugosa	Rorug06G0469800
rosa_samantha	Rh7AG073000 Rh7BG074600 Rh7CG074700 Rh7DG074600
rosa_wichuraiana	Rw7G006210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	236
AciI	CCGC	3 cut(s)	5, 146, 941
AclWI	GGATC	4 cut(s)	124, 327, 334, 931
AcoI	YGGCCR	1 cut(s)	197
AcuI	CTGAAG	1 cut(s)	404
AcyI	GRCGYC	1 cut(s)	233
AfaI	GTAC	2 cut(s)	769, 884
AfeI	AGCGCT	1 cut(s)	162
AfiI	CCNNNNNNNGG	5 cut(s)	308, 715, 716, 728, 1022
AgsI	TTSAA	3 cut(s)	681, 765, 1064
AhlI	ACTAGT	1 cut(s)	782
AjnI	CCWGG	7 cut(s)	168, 301, 325, 804, 991, 1003, 1015
AjuI	GAANNNNNNNTTGG	4 cut(s)	149, 181, 716, 748
AluBI	AGCT	6 cut(s)	67, 290, 347, 390, 967, 1135
AluI	AGCT	6 cut(s)	67, 290, 347, 390, 967, 1135
Alw26I	GTCTC	2 cut(s)	87, 429
AlwI	GGATC	4 cut(s)	124, 327, 334, 931
Aor51HI	AGCGCT	1 cut(s)	162
AoxI	GGCC	6 cut(s)	28, 197, 304, 719, 791, 937
ApaI	GGGCCC	1 cut(s)	723
ApeKI	GCWGC	6 cut(s)	115, 238, 287, 460, 463, 1008
ArsI	GACNNNNNNTTYG	2 cut(s)	79, 111
AseI	ATTAAT	1 cut(s)	1095
AspLEI	GCGC	2 cut(s)	163, 1152
AspS9I	GGNCC	8 cut(s)	193, 329, 401, 719, 720, 791, 938, 974
AsuHPI	GGTGA	2 cut(s)	145, 821
AvaII	GGWCC	4 cut(s)	193, 329, 401, 974
AxyI	CCTNAGG	1 cut(s)	468
BaeGI	GKGCMC	1 cut(s)	723
BaeI	ACNNNNGTAYC	2 cut(s)	483, 516
BanII	GRGCYC	1 cut(s)	723
BbvI	GCAGC	6 cut(s)	127, 250, 299, 472, 475, 1020
BccI	CCATC	3 cut(s)	340, 705, 988
BceAI	ACGGC	1 cut(s)	43
BciT130I	CCWGG	7 cut(s)	170, 303, 327, 806, 993, 1005, 1017
BciVI	GTATCC	1 cut(s)	714
BcoDI	GTCTC	2 cut(s)	87, 429
BcuI	ACTAGT	1 cut(s)	782
BfaI	CTAG	2 cut(s)	387, 783
BfmI	CTRYAG	4 cut(s)	378, 449, 1130, 1136
BfoI	RGCGCY	1 cut(s)	164
BfuI	GTATCC	1 cut(s)	714
BisI	GCNGC	6 cut(s)	116, 239, 288, 461, 464, 1009
BlsI	GCNGC	6 cut(s)	117, 240, 289, 462, 465, 1010
Bme1390I	CCNGG	7 cut(s)	170, 303, 327, 806, 993, 1005, 1017
Bme18I	GGWCC	4 cut(s)	193, 329, 401, 974
BmgT120I	GGNCC	8 cut(s)	193, 329, 401, 719, 720, 791, 938, 974
BmiI	GGNNCC	2 cut(s)	720, 721
BmrFI	CCNGG	7 cut(s)	170, 303, 327, 806, 993, 1005, 1017
BpmI	CTGGAG	2 cut(s)	480, 1092
BsaHI	GRCGYC	1 cut(s)	233
BsaJI	CCNNGG	3 cut(s)	307, 804, 805
Bsc4I	CCNNNNNNNGG	5 cut(s)	308, 715, 716, 728, 1022
Bse118I	RCCGGY	1 cut(s)	34
Bse1I	ACTGG	3 cut(s)	227, 497, 601
Bse21I	CCTNAGG	1 cut(s)	468
Bse3DI	GCAATG	2 cut(s)	296, 656
BseBI	CCWGG	7 cut(s)	170, 303, 327, 806, 993, 1005, 1017
BseDI	CCNNGG	3 cut(s)	307, 804, 805
BseGI	GGATG	3 cut(s)	332, 739, 936
BseLI	CCNNNNNNNGG	5 cut(s)	308, 715, 716, 728, 1022
BseMI	GCAATG	2 cut(s)	296, 656
BseMII	CTCAG	2 cut(s)	281, 440
BseNI	ACTGG	3 cut(s)	227, 497, 601
BseRI	GAGGAG	2 cut(s)	873, 1061
BseSI	GKGCMC	1 cut(s)	723
BseXI	GCAGC	6 cut(s)	127, 250, 299, 472, 475, 1020
BseYI	CCCAGC	1 cut(s)	456
BshFI	GGCC	6 cut(s)	30, 199, 306, 721, 793, 939
BsiSI	CCGG	4 cut(s)	21, 35, 48, 196
BslFI	GGGAC	2 cut(s)	486, 822
BslI	CCNNNNNNNGG	5 cut(s)	308, 715, 716, 728, 1022
BsmAI	GTCTC	2 cut(s)	87, 429
BsmFI	GGGAC	2 cut(s)	486, 822
BsmI	GAATGC	1 cut(s)	241
BsnI	GGCC	6 cut(s)	30, 199, 306, 721, 793, 939
Bsp120I	GGGCCC	1 cut(s)	719
Bsp1286I	GDGCHC	1 cut(s)	723
Bsp143I	GATC	4 cut(s)	129, 319, 339, 923
BspACI	CCGC	3 cut(s)	5, 146, 941
BspANI	GGCC	6 cut(s)	30, 199, 306, 721, 793, 939
BspCNI	CTCAG	2 cut(s)	280, 439
BspLI	GGNNCC	2 cut(s)	720, 721
BspMAI	CTGCAG	1 cut(s)	453
BspPI	GGATC	4 cut(s)	124, 327, 334, 931
BsrDI	GCAATG	2 cut(s)	296, 656
BsrFI	RCCGGY	1 cut(s)	34
BsrI	ACTGG	3 cut(s)	227, 497, 601
BssAI	RCCGGY	1 cut(s)	34
BssECI	CCNNGG	3 cut(s)	307, 804, 805
BssMI	GATC	4 cut(s)	129, 319, 339, 923
BssNI	GRCGYC	1 cut(s)	233
BssT1I	CCWWGG	1 cut(s)	307
Bst2UI	CCWGG	7 cut(s)	170, 303, 327, 806, 993, 1005, 1017
Bst4CI	ACNGT	2 cut(s)	382, 887
Bst6I	CTCTTC	2 cut(s)	86, 510
BstACI	GRCGYC	1 cut(s)	233
BstAPI	GCANNNNNTGC	2 cut(s)	256, 1147
BstC8I	GCNNGC	4 cut(s)	120, 912, 941, 1013
BstDEI	CTNAG	3 cut(s)	267, 426, 468
BstF5I	GGATG	3 cut(s)	332, 739, 936
BstH2I	RGCGCY	1 cut(s)	164
BstHHI	GCGC	2 cut(s)	163, 1152
BstKTI	GATC	4 cut(s)	132, 322, 342, 926
BstMAI	GTCTC	2 cut(s)	87, 429
BstMBI	GATC	4 cut(s)	129, 319, 339, 923
BstMWI	GCNNNNNNNGC	7 cut(s)	44, 124, 247, 256, 287, 457, 1147
BstNI	CCWGG	7 cut(s)	170, 303, 327, 806, 993, 1005, 1017
BstSCI	CCNGG	7 cut(s)	168, 301, 325, 804, 991, 1003, 1015
BstSFI	CTRYAG	4 cut(s)	378, 449, 1130, 1136
BstSLI	GKGCMC	1 cut(s)	723
BstV1I	GCAGC	6 cut(s)	127, 250, 299, 472, 475, 1020
BstX2I	RGATCY	3 cut(s)	129, 339, 923
BstYI	RGATCY	3 cut(s)	129, 339, 923
Bsu36I	CCTNAGG	1 cut(s)	468
BsuI	GTATCC	1 cut(s)	714
BsuRI	GGCC	6 cut(s)	30, 199, 306, 721, 793, 939
BtsCI	GGATG	3 cut(s)	332, 739, 936
BtsI	GCAGTG	1 cut(s)	1055
BtsIMutI	CAGTG	4 cut(s)	234, 387, 963, 1055
Cac8I	GCNNGC	4 cut(s)	120, 912, 941, 1013
CfoI	GCGC	2 cut(s)	163, 1152
Cfr10I	RCCGGY	1 cut(s)	34
Cfr13I	GGNCC	8 cut(s)	193, 329, 401, 719, 720, 791, 938, 974
CsiI	ACCWGGT	1 cut(s)	325
Csp6I	GTAC	2 cut(s)	768, 883
CspCI	CAANNNNNGTGG	2 cut(s)	189, 224
CviAII	CATG	3 cut(s)	79, 754, 847
CviQI	GTAC	2 cut(s)	768, 883
DdeI	CTNAG	3 cut(s)	267, 426, 468
DpnI	GATC	4 cut(s)	131, 321, 341, 925
DpnII	GATC	4 cut(s)	129, 319, 339, 923
EaeI	YGGCCR	1 cut(s)	197
Eam1104I	CTCTTC	2 cut(s)	86, 510
EarI	CTCTTC	2 cut(s)	86, 510
Eco130I	CCWWGG	1 cut(s)	307
Eco24I	GRGCYC	1 cut(s)	723
Eco47I	GGWCC	4 cut(s)	193, 329, 401, 974
Eco47III	AGCGCT	1 cut(s)	162
Eco57I	CTGAAG	1 cut(s)	404
Eco81I	CCTNAGG	1 cut(s)	468
EcoO109I	RGGNCCY	1 cut(s)	719
EcoRII	CCWGG	7 cut(s)	168, 301, 325, 804, 991, 1003, 1015
EcoT14I	CCWWGG	1 cut(s)	307
EcoT22I	ATGCAT	1 cut(s)	870
EcoT38I	GRGCYC	1 cut(s)	723
ErhI	CCWWGG	1 cut(s)	307
FaeI	CATG	3 cut(s)	82, 757, 850
FaqI	GGGAC	2 cut(s)	486, 822
FatI	CATG	3 cut(s)	78, 753, 846
FauI	CCCGC	1 cut(s)	948
FauNDI	CATATG	1 cut(s)	639
Fnu4HI	GCNGC	6 cut(s)	116, 239, 288, 461, 464, 1009
FokI	GGATG	3 cut(s)	319, 726, 943
FriOI	GRGCYC	1 cut(s)	723
Fsp4HI	GCNGC	6 cut(s)	116, 239, 288, 461, 464, 1009
FspBI	CTAG	2 cut(s)	387, 783
GlaI	GCGC	2 cut(s)	162, 1151
GluI	GCNGC	6 cut(s)	116, 239, 288, 461, 464, 1009
GsaI	CCCAGC	1 cut(s)	460
GsuI	CTGGAG	2 cut(s)	480, 1092
HaeII	RGCGCY	1 cut(s)	164
HaeIII	GGCC	6 cut(s)	30, 199, 306, 721, 793, 939
HapII	CCGG	4 cut(s)	21, 35, 48, 196
HhaI	GCGC	2 cut(s)	163, 1152
Hin1I	GRCGYC	1 cut(s)	233
Hin1II	CATG	3 cut(s)	82, 757, 850
Hin6I	GCGC	2 cut(s)	161, 1150
HinP1I	GCGC	2 cut(s)	161, 1150
HincII	GTYRAC	1 cut(s)	1035
HindII	GTYRAC	1 cut(s)	1035
HinfI	GANTC	6 cut(s)	94, 142, 211, 481, 493, 1075
HpaI	GTTAAC	1 cut(s)	1035
HpaII	CCGG	4 cut(s)	21, 35, 48, 196
HphI	GGTGA	2 cut(s)	145, 821
Hpy166II	GTNNAC	1 cut(s)	1035
Hpy188I	TCNGA	3 cut(s)	99, 480, 880
Hpy188III	TCNNGA	3 cut(s)	317, 972, 1109
Hpy8I	GTNNAC	1 cut(s)	1035
Hpy99I	CGWCG	3 cut(s)	29, 238, 397
HpyAV	CCTTC	5 cut(s)	447, 687, 753, 804, 1045
HpyCH4III	ACNGT	2 cut(s)	382, 887
HpyCH4IV	ACGT	1 cut(s)	233
HpyCH4V	TGCA	7 cut(s)	259, 353, 451, 607, 649, 868, 910
HpyF10VI	GCNNNNNNNGC	7 cut(s)	44, 124, 247, 256, 287, 457, 1147
HpyF3I	CTNAG	3 cut(s)	267, 426, 468
HpySE526I	ACGT	1 cut(s)	233
Hsp92I	GRCGYC	1 cut(s)	233
Hsp92II	CATG	3 cut(s)	82, 757, 850
HspAI	GCGC	2 cut(s)	161, 1150
KspAI	GTTAAC	1 cut(s)	1035
Kzo9I	GATC	4 cut(s)	129, 319, 339, 923
LmnI	GCTCC	2 cut(s)	295, 352
Lsp1109I	GCAGC	6 cut(s)	127, 250, 299, 472, 475, 1020
MabI	ACCWGGT	1 cut(s)	325
MaeI	CTAG	2 cut(s)	387, 783
MaeII	ACGT	1 cut(s)	233
MaeIII	GTNAC	2 cut(s)	229, 827
MalI	GATC	4 cut(s)	131, 321, 341, 925
MboI	GATC	4 cut(s)	129, 319, 339, 923
MboII	GAAGA	5 cut(s)	70, 103, 410, 497, 546
MfeI	CAATTG	1 cut(s)	206
MflI	RGATCY	3 cut(s)	129, 339, 923
MhlI	GDGCHC	1 cut(s)	723
MluCI	AATT	4 cut(s)	177, 206, 724, 1092
MlyI	GAGTC	2 cut(s)	103, 487
MmeI	TCCRAC	3 cut(s)	560, 760, 877
Mph1103I	ATGCAT	1 cut(s)	870
MseI	TTAA	3 cut(s)	414, 1034, 1095
MspI	CCGG	4 cut(s)	21, 35, 48, 196
MspR9I	CCNGG	7 cut(s)	170, 303, 327, 806, 993, 1005, 1017
MunI	CAATTG	1 cut(s)	206
Mva1269I	GAATGC	1 cut(s)	241
MvaI	CCWGG	7 cut(s)	170, 303, 327, 806, 993, 1005, 1017
MwoI	GCNNNNNNNGC	7 cut(s)	44, 124, 247, 256, 287, 457, 1147
NdeI	CATATG	1 cut(s)	639
NdeII	GATC	4 cut(s)	129, 319, 339, 923
NlaIII	CATG	3 cut(s)	82, 757, 850
NlaIV	GGNNCC	2 cut(s)	720, 721
NmuCI	GTSAC	2 cut(s)	229, 827
NsiI	ATGCAT	1 cut(s)	870
PasI	CCCWGGG	1 cut(s)	805
PctI	GAATGC	1 cut(s)	241
PfeI	GAWTC	4 cut(s)	142, 211, 481, 1075
PkrI	GCNGC	6 cut(s)	117, 240, 289, 462, 465, 1010
PleI	GAGTC	2 cut(s)	102, 487
PpsI	GAGTC	2 cut(s)	102, 487
PshBI	ATTAAT	1 cut(s)	1095
Psp6I	CCWGG	7 cut(s)	168, 301, 325, 804, 991, 1003, 1015
PspFI	CCCAGC	1 cut(s)	456
PspGI	CCWGG	7 cut(s)	168, 301, 325, 804, 991, 1003, 1015
PspN4I	GGNNCC	2 cut(s)	720, 721
PspOMI	GGGCCC	1 cut(s)	719
PspPI	GGNCC	8 cut(s)	193, 329, 401, 719, 720, 791, 938, 974
PsrI	GAACNNNNNNTAC	2 cut(s)	53, 85
PstI	CTGCAG	1 cut(s)	453
PsuI	RGATCY	3 cut(s)	129, 339, 923
RsaI	GTAC	2 cut(s)	769, 884
RsaNI	GTAC	2 cut(s)	768, 883
SaqAI	TTAA	3 cut(s)	414, 1034, 1095
SatI	GCNGC	6 cut(s)	116, 239, 288, 461, 464, 1009
Sau3AI	GATC	4 cut(s)	129, 319, 339, 923
Sau96I	GGNCC	8 cut(s)	193, 329, 401, 719, 720, 791, 938, 974
SchI	GAGTC	2 cut(s)	103, 487
ScrFI	CCNGG	7 cut(s)	170, 303, 327, 806, 993, 1005, 1017
SduI	GDGCHC	1 cut(s)	723
SexAI	ACCWGGT	1 cut(s)	325
SfcI	CTRYAG	4 cut(s)	378, 449, 1130, 1136
SinI	GGWCC	4 cut(s)	193, 329, 401, 974
SpeI	ACTAGT	1 cut(s)	782
Sse9I	AATT	4 cut(s)	177, 206, 724, 1092
SsiI	CCGC	3 cut(s)	5, 146, 941
SspMI	CTAG	2 cut(s)	387, 783
StyD4I	CCNGG	7 cut(s)	168, 301, 325, 804, 991, 1003, 1015
StyI	CCWWGG	1 cut(s)	307
TaaI	ACNGT	2 cut(s)	382, 887
TaiI	ACGT	1 cut(s)	236
TaqI	TCGA	1 cut(s)	56
TasI	AATT	4 cut(s)	177, 206, 724, 1092
TatI	WGTACW	1 cut(s)	882
TfiI	GAWTC	4 cut(s)	142, 211, 481, 1075
Tru1I	TTAA	3 cut(s)	414, 1034, 1095
Tru9I	TTAA	3 cut(s)	414, 1034, 1095
TscAI	CASTG	4 cut(s)	234, 387, 963, 1062
TseFI	GTSAC	2 cut(s)	229, 827
TseI	GCWGC	6 cut(s)	115, 238, 287, 460, 463, 1008
Tsp45I	GTSAC	2 cut(s)	229, 827
TspDTI	ATGAA	5 cut(s)	104, 429, 563, 749, 786
TspRI	CASTG	4 cut(s)	234, 387, 963, 1062
VpaK11BI	GGWCC	4 cut(s)	193, 329, 401, 974
VspI	ATTAAT	1 cut(s)	1095
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1019
XspI	CTAG	2 cut(s)	387, 783
ZraI	GACGTC	1 cut(s)	234
Zsp2I	ATGCAT	1 cut(s)	870

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.