Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0010390

Physical Location & Seq

Genomic Coordinates Reverse (-)

6818733 .. 6821418

Gene Structure 2686 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g12080.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGCGGGAAAGCAAATCGCCGGCGACGGCCTACCGGCGAACATAGCCGGAATGTCGAAGAACCAGCTCTACGAAATCATGTCTCAAATGAAGAGTCTGATAGAACAGAACCAGCAGCAAGCAAGGCAGATCCTTATCCAGAATCCGCTTCTCACCAAAGCGCTTTTCCAGGCGCAAATTATGCTTGGGATGGTCCGGCCACCGCAATCGATGCCCAACATTCAGCCAGTGATGTCGCAGCATTCGCAGCAGTTGGTACAACCTACTCAGCAGTCTAACACTCAGGTGGCTCCCTCATTGCCAGGCCTTGGTGTTCAGGACCAACCAGGTCCATCCCAGATGCAAGCTCCTGCAAGAAAGCAATACCAAAACCAACCTACAATGCCTAGCTCATCGGCTGCTCCTCCTGCATTTAATCTTCAGTCTCAGCCCATGTCTTCATATCCTCTTCAGACCCAGCAGCAGCCTAAGGGACATCTGAATCCGCAAATGACCCCGGCATCTCTACCACAGTCGTCTCAACTTCCTAATCCTCCAGCACACCCTCATCATTCTTCACACCACCACTTCCAAATCACCCACCACCTCAGTCCATGTATCAGGGAGGAGGTATGCATTTGGGTTCGGAGTACAGCCATCAAGTTGGAACTTCTATGCAAGCAGATAGAGGAACTTGGATGTCTGGCCCGCCGGAAAGTTCGTCAGTGCCACAGCTCTCAGGACCACCCTCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CSTF2_hinge CSTF_C

Protein Analysis

245

Amino Acids

27.1

Weight (kDa)

9.54

Isoelectric Point (pI)

87.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CSTF2_hinge	PF14327	9 - 67	8.5e-17	Hinge domain of cleavage stimulation factor subunit 2
CSTF_C	PF14304	349 - 384	5.4e-08	Transcription termination and cleavage factor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73840 AT1G73840
fragaria_vesca	FvH4_5g12080 FvH4_5g12080 FvH4_5g12080 FvH4_5g12080
malus_domestica	MD14G1227000.v1.1
prunus_persica	Prupe.5G221700_v2.0.a1
pyrus_communis	pycom14g18840
rosa_chinensis	RchiOBHm_Chr7g0185491
rosa_laevigata	RLG00000004908
rosa_multiflora	Rmu_sc0010190.1_g000021 Rmu_sc0032992.1_g000001 Rmu_sc0042045.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268890
rosa_rugosa	Rorug06G0469800
rosa_samantha	Rh7AG073000 Rh7BG074600 Rh7CG074700 Rh7DG074600
rosa_wichuraiana	Rw7G006210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	308
AciI	CCGC	5 cut(s)	5, 146, 203, 485, 688
AclWI	GGATC	1 cut(s)	124
AcoI	YGGCCR	1 cut(s)	197
AcuI	CTGAAG	2 cut(s)	404, 434
AfaI	GTAC	2 cut(s)	258, 631
AfeI	AGCGCT	1 cut(s)	162
AfiI	CCNNNNNNNGG	1 cut(s)	308
AjnI	CCWGG	3 cut(s)	168, 301, 325
AjuI	GAANNNNNNNTTGG	2 cut(s)	149, 181
AleI	CACNNNNGTG	1 cut(s)	284
AluBI	AGCT	4 cut(s)	67, 347, 390, 714
AluI	AGCT	4 cut(s)	67, 347, 390, 714
Alw26I	GTCTC	3 cut(s)	87, 429, 522
AlwI	GGATC	1 cut(s)	124
Aor51HI	AGCGCT	1 cut(s)	162
AoxI	GGCC	4 cut(s)	28, 197, 304, 684
ApeKI	GCWGC	6 cut(s)	115, 238, 247, 398, 460, 463
ArsI	GACNNNNNNTTYG	2 cut(s)	79, 111
AspLEI	GCGC	2 cut(s)	163, 175
AspS9I	GGNCC	5 cut(s)	193, 319, 329, 685, 721
AsuC2I	CCSGG	1 cut(s)	497
AsuHPI	GGTGA	2 cut(s)	145, 568
AvaII	GGWCC	4 cut(s)	193, 319, 329, 721
AxyI	CCTNAGG	1 cut(s)	468
BbsI	GAAGAC	1 cut(s)	429
BbvI	GCAGC	6 cut(s)	127, 250, 259, 385, 472, 475
BccI	CCATC	3 cut(s)	184, 340, 644
BceAI	ACGGC	1 cut(s)	43
BciT130I	CCWGG	3 cut(s)	170, 303, 327
BcnI	CCSGG	1 cut(s)	497
BcoDI	GTCTC	3 cut(s)	87, 429, 522
BfaI	CTAG	1 cut(s)	387
BfoI	RGCGCY	1 cut(s)	164
BisI	GCNGC	6 cut(s)	116, 239, 248, 399, 461, 464
BlsI	GCNGC	6 cut(s)	117, 240, 249, 400, 462, 465
Bme1390I	CCNGG	4 cut(s)	170, 303, 327, 497
Bme18I	GGWCC	4 cut(s)	193, 319, 329, 721
BmgT120I	GGNCC	5 cut(s)	193, 319, 329, 685, 721
BmiI	GGNNCC	1 cut(s)	291
BmrFI	CCNGG	4 cut(s)	170, 303, 327, 497
BmsI	GCATC	3 cut(s)	201, 330, 509
BpiI	GAAGAC	1 cut(s)	429
BpmI	CTGGAG	1 cut(s)	519
BpuMI	CCSGG	1 cut(s)	497
Bsa29I	ATCGAT	1 cut(s)	209
BsaBI	GATNNNNATC	1 cut(s)	134
BsaJI	CCNNGG	2 cut(s)	307, 495
Bsc4I	CCNNNNNNNGG	1 cut(s)	308
Bse118I	RCCGGY	2 cut(s)	20, 34
Bse1I	ACTGG	1 cut(s)	227
Bse21I	CCTNAGG	1 cut(s)	468
Bse3DI	GCAATG	1 cut(s)	296
Bse8I	GATNNNNATC	1 cut(s)	134
BseBI	CCWGG	3 cut(s)	170, 303, 327
BseCI	ATCGAT	1 cut(s)	209
BseDI	CCNNGG	2 cut(s)	307, 495
BseGI	GGATG	3 cut(s)	195, 332, 683
BseJI	GATNNNNATC	1 cut(s)	134
BseLI	CCNNNNNNNGG	1 cut(s)	308
BseMI	GCAATG	1 cut(s)	296
BseMII	CTCAG	5 cut(s)	281, 296, 440, 601, 731
BseNI	ACTGG	1 cut(s)	227
BseRI	GAGGAG	2 cut(s)	393, 620
BseXI	GCAGC	6 cut(s)	127, 250, 259, 385, 472, 475
BseYI	CCCAGC	1 cut(s)	456
BshFI	GGCC	4 cut(s)	30, 199, 306, 686
BshVI	ATCGAT	1 cut(s)	209
BsiSI	CCGG	6 cut(s)	21, 35, 48, 196, 497, 691
BslFI	GGGAC	1 cut(s)	486
BslI	CCNNNNNNNGG	1 cut(s)	308
BsmAI	GTCTC	3 cut(s)	87, 429, 522
BsmBI	CGTCTC	1 cut(s)	522
BsmFI	GGGAC	1 cut(s)	486
BsmI	GAATGC	1 cut(s)	241
BsnI	GGCC	4 cut(s)	30, 199, 306, 686
Bsp143I	GATC	1 cut(s)	129
BspACI	CCGC	5 cut(s)	5, 146, 203, 485, 688
BspANI	GGCC	4 cut(s)	30, 199, 306, 686
BspCNI	CTCAG	5 cut(s)	280, 295, 439, 600, 730
BspDI	ATCGAT	1 cut(s)	209
BspLI	GGNNCC	1 cut(s)	291
BspPI	GGATC	1 cut(s)	124
BsrDI	GCAATG	1 cut(s)	296
BsrFI	RCCGGY	2 cut(s)	20, 34
BsrI	ACTGG	1 cut(s)	227
BssAI	RCCGGY	2 cut(s)	20, 34
BssECI	CCNNGG	2 cut(s)	307, 495
BssMI	GATC	1 cut(s)	129
BssT1I	CCWWGG	1 cut(s)	307
Bst2UI	CCWGG	3 cut(s)	170, 303, 327
Bst4CI	ACNGT	1 cut(s)	513
Bst6I	CTCTTC	2 cut(s)	86, 453
BstAPI	GCANNNNNTGC	2 cut(s)	181, 211
BstC8I	GCNNGC	5 cut(s)	22, 120, 345, 659, 688
BstDEI	CTNAG	6 cut(s)	267, 282, 426, 468, 587, 717
BstF5I	GGATG	3 cut(s)	195, 332, 683
BstH2I	RGCGCY	1 cut(s)	164
BstHHI	GCGC	2 cut(s)	163, 175
BstKTI	GATC	1 cut(s)	132
BstMAI	GTCTC	3 cut(s)	87, 429, 522
BstMBI	GATC	1 cut(s)	129
BstMWI	GCNNNNNNNGC	7 cut(s)	44, 124, 181, 211, 244, 247, 407
BstNI	CCWGG	3 cut(s)	170, 303, 327
BstSCI	CCNGG	4 cut(s)	168, 301, 325, 495
BstV1I	GCAGC	6 cut(s)	127, 250, 259, 385, 472, 475
BstV2I	GAAGAC	1 cut(s)	429
BstX2I	RGATCY	1 cut(s)	129
BstXI	CCANNNNNNTGG	1 cut(s)	643
BstYI	RGATCY	1 cut(s)	129
Bsu15I	ATCGAT	1 cut(s)	209
Bsu36I	CCTNAGG	1 cut(s)	468
BsuRI	GGCC	4 cut(s)	30, 199, 306, 686
BsuTUI	ATCGAT	1 cut(s)	209
BtsCI	GGATG	3 cut(s)	195, 332, 683
BtsIMutI	CAGTG	2 cut(s)	234, 710
Cac8I	GCNNGC	5 cut(s)	22, 120, 345, 659, 688
CfoI	GCGC	2 cut(s)	163, 175
Cfr10I	RCCGGY	2 cut(s)	20, 34
Cfr13I	GGNCC	5 cut(s)	193, 319, 329, 685, 721
ClaI	ATCGAT	1 cut(s)	209
CsiI	ACCWGGT	1 cut(s)	325
Csp6I	GTAC	2 cut(s)	257, 630
CviAII	CATG	3 cut(s)	79, 433, 594
CviQI	GTAC	2 cut(s)	257, 630
DdeI	CTNAG	6 cut(s)	267, 282, 426, 468, 587, 717
DpnI	GATC	1 cut(s)	131
DpnII	GATC	1 cut(s)	129
EaeI	YGGCCR	1 cut(s)	197
Eam1104I	CTCTTC	2 cut(s)	86, 453
EarI	CTCTTC	2 cut(s)	86, 453
Eco130I	CCWWGG	1 cut(s)	307
Eco147I	AGGCCT	1 cut(s)	306
Eco47I	GGWCC	4 cut(s)	193, 319, 329, 721
Eco47III	AGCGCT	1 cut(s)	162
Eco57I	CTGAAG	2 cut(s)	404, 434
Eco81I	CCTNAGG	1 cut(s)	468
EcoRII	CCWGG	3 cut(s)	168, 301, 325
EcoT14I	CCWWGG	1 cut(s)	307
EcoT22I	ATGCAT	1 cut(s)	617
ErhI	CCWWGG	1 cut(s)	307
Esp3I	CGTCTC	1 cut(s)	522
FaeI	CATG	3 cut(s)	82, 436, 597
FaiI	YATR	8 cut(s)	44, 80, 182, 434, 442, 595, 613, 655
FaqI	GGGAC	1 cut(s)	486
FatI	CATG	3 cut(s)	78, 432, 593
FauI	CCCGC	1 cut(s)	695
Fnu4HI	GCNGC	6 cut(s)	116, 239, 248, 399, 461, 464
FokI	GGATG	3 cut(s)	202, 319, 690
Fsp4HI	GCNGC	6 cut(s)	116, 239, 248, 399, 461, 464
FspBI	CTAG	1 cut(s)	387
GlaI	GCGC	2 cut(s)	162, 174
GluI	GCNGC	6 cut(s)	116, 239, 248, 399, 461, 464
GsaI	CCCAGC	1 cut(s)	460
GsuI	CTGGAG	1 cut(s)	519
HaeII	RGCGCY	1 cut(s)	164
HaeIII	GGCC	4 cut(s)	30, 199, 306, 686
HapII	CCGG	6 cut(s)	21, 35, 48, 196, 497, 691
HhaI	GCGC	2 cut(s)	163, 175
Hin1II	CATG	3 cut(s)	82, 436, 597
Hin6I	GCGC	2 cut(s)	161, 173
HinP1I	GCGC	2 cut(s)	161, 173
HinfI	GANTC	3 cut(s)	94, 142, 481
HpaII	CCGG	6 cut(s)	21, 35, 48, 196, 497, 691
HphI	GGTGA	2 cut(s)	145, 568
Hpy188I	TCNGA	4 cut(s)	99, 453, 480, 627
Hpy188III	TCNNGA	3 cut(s)	139, 317, 719
Hpy99I	CGWCG	1 cut(s)	29
HpyCH4III	ACNGT	1 cut(s)	513
HpyCH4V	TGCA	5 cut(s)	343, 353, 410, 615, 657
HpyF10VI	GCNNNNNNNGC	7 cut(s)	44, 124, 181, 211, 244, 247, 407
HpyF3I	CTNAG	6 cut(s)	267, 282, 426, 468, 587, 717
Hsp92II	CATG	3 cut(s)	82, 436, 597
HspAI	GCGC	2 cut(s)	161, 173
KroI	GCCGGC	1 cut(s)	20
KroNI	GCCGGC	1 cut(s)	22
Kzo9I	GATC	1 cut(s)	129
LmnI	GCTCC	3 cut(s)	295, 352, 406
Lsp1109I	GCAGC	6 cut(s)	127, 250, 259, 385, 472, 475
LweI	GCATC	3 cut(s)	201, 330, 509
MabI	ACCWGGT	1 cut(s)	325
MaeI	CTAG	1 cut(s)	387
MalI	GATC	1 cut(s)	131
MboI	GATC	1 cut(s)	129
MboII	GAAGA	6 cut(s)	70, 103, 410, 429, 440, 546
MflI	RGATCY	1 cut(s)	129
MluCI	AATT	1 cut(s)	177
MlyI	GAGTC	1 cut(s)	103
MmeI	TCCRAC	1 cut(s)	624
MnlI	CCTC	9 cut(s)	304, 414, 456, 543, 555, 596, 598, 601, 661
Mph1103I	ATGCAT	1 cut(s)	617
MreI	CGCCGGCG	1 cut(s)	20
MroNI	GCCGGC	1 cut(s)	20
MseI	TTAA	1 cut(s)	414
MslI	CAYNNNNRTG	1 cut(s)	284
MspI	CCGG	6 cut(s)	21, 35, 48, 196, 497, 691
MspR9I	CCNGG	4 cut(s)	170, 303, 327, 497
Mva1269I	GAATGC	1 cut(s)	241
MvaI	CCWGG	3 cut(s)	170, 303, 327
MwoI	GCNNNNNNNGC	7 cut(s)	44, 124, 181, 211, 244, 247, 407
NaeI	GCCGGC	1 cut(s)	22
NciI	CCSGG	1 cut(s)	497
NdeII	GATC	1 cut(s)	129
NgoMIV	GCCGGC	1 cut(s)	20
NlaIII	CATG	3 cut(s)	82, 436, 597
NlaIV	GGNNCC	1 cut(s)	291
NsiI	ATGCAT	1 cut(s)	617
OliI	CACNNNNGTG	1 cut(s)	284
PceI	AGGCCT	1 cut(s)	306
PctI	GAATGC	1 cut(s)	241
PdiI	GCCGGC	1 cut(s)	22
PfeI	GAWTC	2 cut(s)	142, 481
PflMI	CCANNNNNTGG	1 cut(s)	308
PkrI	GCNGC	6 cut(s)	117, 240, 249, 400, 462, 465
PleI	GAGTC	1 cut(s)	102
PpsI	GAGTC	1 cut(s)	102
Psp6I	CCWGG	3 cut(s)	168, 301, 325
PspFI	CCCAGC	1 cut(s)	456
PspGI	CCWGG	3 cut(s)	168, 301, 325
PspN4I	GGNNCC	1 cut(s)	291
PspPI	GGNCC	5 cut(s)	193, 319, 329, 685, 721
PsrI	GAACNNNNNNTAC	2 cut(s)	53, 85
PsuI	RGATCY	1 cut(s)	129
RsaI	GTAC	2 cut(s)	258, 631
RsaNI	GTAC	2 cut(s)	257, 630
RseI	CAYNNNNRTG	1 cut(s)	284
SaqAI	TTAA	1 cut(s)	414
SatI	GCNGC	6 cut(s)	116, 239, 248, 399, 461, 464
Sau3AI	GATC	1 cut(s)	129
Sau96I	GGNCC	5 cut(s)	193, 319, 329, 685, 721
SchI	GAGTC	1 cut(s)	103
ScrFI	CCNGG	4 cut(s)	170, 303, 327, 497
SexAI	ACCWGGT	1 cut(s)	325
SfaNI	GCATC	3 cut(s)	201, 330, 509
SgrAI	CRCCGGYG	1 cut(s)	20
SinI	GGWCC	4 cut(s)	193, 319, 329, 721
SmiMI	CAYNNNNRTG	1 cut(s)	284
Sse9I	AATT	1 cut(s)	177
SseBI	AGGCCT	1 cut(s)	306
SsiI	CCGC	5 cut(s)	5, 146, 203, 485, 688
SspMI	CTAG	1 cut(s)	387
StuI	AGGCCT	1 cut(s)	306
StyD4I	CCNGG	4 cut(s)	168, 301, 325, 495
StyI	CCWWGG	1 cut(s)	307
TaaI	ACNGT	1 cut(s)	513
TaqI	TCGA	2 cut(s)	56, 209
TasI	AATT	1 cut(s)	177
TatI	WGTACW	1 cut(s)	629
TfiI	GAWTC	2 cut(s)	142, 481
Tru1I	TTAA	1 cut(s)	414
Tru9I	TTAA	1 cut(s)	414
TscAI	CASTG	2 cut(s)	234, 710
TseI	GCWGC	6 cut(s)	115, 238, 247, 398, 460, 463
TspDTI	ATGAA	2 cut(s)	104, 429
TspRI	CASTG	2 cut(s)	234, 710
Van91I	CCANNNNNTGG	1 cut(s)	308
VpaK11BI	GGWCC	4 cut(s)	193, 319, 329, 721
XspI	CTAG	1 cut(s)	387
Zsp2I	ATGCAT	1 cut(s)	617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.