Rh7DG074600

Transcription termination and cleavage factor C-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0010390
Physical Location & Seq
Forward (+)
5786829 .. 5789808
2980 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG074600.1

Sequence Viewer

Length: 882 bp
ATGGCGGGAAAGCAAATCTCCGGCGACGGCCTACCGGCGAATATAGCCGGAATGTCGAAGAACCAGCTCTACGAAATCATGTCTCAAATGAAGAGTCTGATAGAACAGAACCAGCAGCAAGCGAGGCAGATCCTCATACAGAATCCGCTTCTCACCAAAGCGCTTTTCCAGGCACAAATTATGCTTGGAATGGTCCGGCCACCTCAATCGATTCCCACCATTCAGCCAGTGACGTCGCAGCATTCACAGCAGTCGGTGCAACCAACTCAGCAGTCTAATGCTCTGGCAGCTCCCTCATTGCCTGGCCTTGGTGTTCAGGATCAACCAGGTCCATCCCAGATCCAAGCTCCTGCAAGAAAGCAATACCAAAACCAATCTACAGTGCCTAGCTCGTCGGCTGGTCCTCCTGCGTTTAATCTTCAGTCTCAGCCTATGCCTTCATATCCCCTGCAGACCCAGCAGCAGCCTAAGGGACATCTGAATCCCCAAATGACTCCAGTATCTCTTCCACAATCCTCTCAACTTCCAAATCCTCCAACACACCCTCATCATTCTTCACAGCCACCTCAACTTCATCAAACCCAAATGGCTTCTTACAACCAGTTGCAACAGCCATTACAGACAAGTGGAGGTCATCATATGCCCCTGCAACCACCATTGCCACCACAACCAAGACCTTCAATGCCTAACTACCACCATCAGTATCCCCCACAAATGGGGCCCAATTCGGGTTTCCAACATCCTTCACAATCCATGTTTCATTCAAGTACGAAACCCCCTACTAGTGTTGGGCCTTCATTTCCCCTGGGACAGCCACCACTTCCAAGTCACCCACCACCTCAATCCATGTATCAGTTGCTGGTGACGCAATGTTTCCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CSTF2_hinge CSTF_C

Protein Analysis

293

Amino Acids

31.92

Weight (kDa)

9.76

Isoelectric Point (pI)

88.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CSTF2_hinge PF14327 12 - 67 5.2e-17 Hinge domain of cleavage stimulation factor subunit 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 236
AciI CCGC 2 cut(s) 5, 146
AclWI GGATC 3 cut(s) 124, 327, 334
AcoI YGGCCR 1 cut(s) 197
AcuI CTGAAG 1 cut(s) 404
AcyI GRCGYC 1 cut(s) 233
AfaI GTAC 1 cut(s) 769
AfeI AGCGCT 1 cut(s) 162
AfiI CCNNNNNNNGG 4 cut(s) 308, 715, 716, 728
AgsI TTSAA 2 cut(s) 681, 765
AhlI ACTAGT 1 cut(s) 782
AjnI CCWGG 4 cut(s) 168, 301, 325, 804
AjuI GAANNNNNNNTTGG 4 cut(s) 149, 181, 716, 748
AluBI AGCT 4 cut(s) 67, 290, 347, 390
AluI AGCT 4 cut(s) 67, 290, 347, 390
Alw26I GTCTC 2 cut(s) 87, 429
AlwI GGATC 3 cut(s) 124, 327, 334
AlwNI CAGNNNCTG 1 cut(s) 859
Aor51HI AGCGCT 1 cut(s) 162
AoxI GGCC 5 cut(s) 28, 197, 304, 719, 791
ApaI GGGCCC 1 cut(s) 723
ApeKI GCWGC 5 cut(s) 115, 238, 287, 460, 463
ArsI GACNNNNNNTTYG 2 cut(s) 79, 111
AspLEI GCGC 1 cut(s) 163
AspS9I GGNCC 6 cut(s) 193, 329, 401, 719, 720, 791
AsuHPI GGTGA 3 cut(s) 145, 821, 874
AvaII GGWCC 3 cut(s) 193, 329, 401
AxyI CCTNAGG 1 cut(s) 468
BaeGI GKGCMC 1 cut(s) 723
BaeI ACNNNNGTAYC 2 cut(s) 483, 516
BanII GRGCYC 1 cut(s) 723
BbvI GCAGC 5 cut(s) 127, 250, 299, 472, 475
BccI CCATC 2 cut(s) 340, 705
BceAI ACGGC 1 cut(s) 43
BciT130I CCWGG 4 cut(s) 170, 303, 327, 806
BciVI GTATCC 1 cut(s) 714
BcoDI GTCTC 2 cut(s) 87, 429
BcuI ACTAGT 1 cut(s) 782
BfaI CTAG 2 cut(s) 387, 783
BfmI CTRYAG 2 cut(s) 378, 449
BfoI RGCGCY 1 cut(s) 164
BfuI GTATCC 1 cut(s) 714
BisI GCNGC 5 cut(s) 116, 239, 288, 461, 464
BlsI GCNGC 5 cut(s) 117, 240, 289, 462, 465
Bme1390I CCNGG 4 cut(s) 170, 303, 327, 806
Bme18I GGWCC 3 cut(s) 193, 329, 401
BmgT120I GGNCC 6 cut(s) 193, 329, 401, 719, 720, 791
BmiI GGNNCC 2 cut(s) 720, 721
BmrFI CCNGG 4 cut(s) 170, 303, 327, 806
BpmI CTGGAG 1 cut(s) 480
Bsa29I ATCGAT 1 cut(s) 209
BsaHI GRCGYC 1 cut(s) 233
BsaJI CCNNGG 3 cut(s) 307, 804, 805
Bsc4I CCNNNNNNNGG 4 cut(s) 308, 715, 716, 728
Bse118I RCCGGY 1 cut(s) 34
Bse1I ACTGG 3 cut(s) 227, 497, 601
Bse21I CCTNAGG 1 cut(s) 468
Bse3DI GCAATG 3 cut(s) 296, 656, 875
BseBI CCWGG 4 cut(s) 170, 303, 327, 806
BseCI ATCGAT 1 cut(s) 209
BseDI CCNNGG 3 cut(s) 307, 804, 805
BseGI GGATG 2 cut(s) 332, 739
BseLI CCNNNNNNNGG 4 cut(s) 308, 715, 716, 728
BseMI GCAATG 3 cut(s) 296, 656, 875
BseMII CTCAG 2 cut(s) 281, 440
BseNI ACTGG 3 cut(s) 227, 497, 601
BseSI GKGCMC 1 cut(s) 723
BseXI GCAGC 5 cut(s) 127, 250, 299, 472, 475
BseYI CCCAGC 1 cut(s) 456
BshFI GGCC 5 cut(s) 30, 199, 306, 721, 793
BshVI ATCGAT 1 cut(s) 209
BsiSI CCGG 4 cut(s) 21, 35, 48, 196
BslFI GGGAC 2 cut(s) 486, 822
BslI CCNNNNNNNGG 4 cut(s) 308, 715, 716, 728
BsmAI GTCTC 2 cut(s) 87, 429
BsmFI GGGAC 2 cut(s) 486, 822
BsmI GAATGC 1 cut(s) 241
BsnI GGCC 5 cut(s) 30, 199, 306, 721, 793
Bsp120I GGGCCC 1 cut(s) 719
Bsp1286I GDGCHC 1 cut(s) 723
Bsp143I GATC 3 cut(s) 129, 319, 339
BspACI CCGC 2 cut(s) 5, 146
BspANI GGCC 5 cut(s) 30, 199, 306, 721, 793
BspCNI CTCAG 2 cut(s) 280, 439
BspDI ATCGAT 1 cut(s) 209
BspLI GGNNCC 2 cut(s) 720, 721
BspMAI CTGCAG 1 cut(s) 453
BspPI GGATC 3 cut(s) 124, 327, 334
BsrDI GCAATG 3 cut(s) 296, 656, 875
BsrFI RCCGGY 1 cut(s) 34
BsrI ACTGG 3 cut(s) 227, 497, 601
BssAI RCCGGY 1 cut(s) 34
BssECI CCNNGG 3 cut(s) 307, 804, 805
BssMI GATC 3 cut(s) 129, 319, 339
BssNI GRCGYC 1 cut(s) 233
BssT1I CCWWGG 1 cut(s) 307
Bst2UI CCWGG 4 cut(s) 170, 303, 327, 806
Bst4CI ACNGT 1 cut(s) 382
Bst6I CTCTTC 2 cut(s) 86, 510
BstACI GRCGYC 1 cut(s) 233
BstAPI GCANNNNNTGC 1 cut(s) 256
BstC8I GCNNGC 1 cut(s) 120
BstDEI CTNAG 3 cut(s) 267, 426, 468
BstF5I GGATG 2 cut(s) 332, 739
BstH2I RGCGCY 1 cut(s) 164
BstHHI GCGC 1 cut(s) 163
BstKTI GATC 3 cut(s) 132, 322, 342
BstMAI GTCTC 2 cut(s) 87, 429
BstMBI GATC 3 cut(s) 129, 319, 339
BstMWI GCNNNNNNNGC 7 cut(s) 44, 124, 247, 256, 287, 457, 865
BstNI CCWGG 4 cut(s) 170, 303, 327, 806
BstSCI CCNGG 4 cut(s) 168, 301, 325, 804
BstSFI CTRYAG 2 cut(s) 378, 449
BstSLI GKGCMC 1 cut(s) 723
BstV1I GCAGC 5 cut(s) 127, 250, 299, 472, 475
BstX2I RGATCY 2 cut(s) 129, 339
BstYI RGATCY 2 cut(s) 129, 339
Bsu15I ATCGAT 1 cut(s) 209
Bsu36I CCTNAGG 1 cut(s) 468
BsuI GTATCC 1 cut(s) 714
BsuRI GGCC 5 cut(s) 30, 199, 306, 721, 793
BsuTUI ATCGAT 1 cut(s) 209
BtsCI GGATG 2 cut(s) 332, 739
BtsIMutI CAGTG 2 cut(s) 234, 387
Cac8I GCNNGC 1 cut(s) 120
CaiI CAGNNNCTG 1 cut(s) 859
CfoI GCGC 1 cut(s) 163
Cfr10I RCCGGY 1 cut(s) 34
Cfr13I GGNCC 6 cut(s) 193, 329, 401, 719, 720, 791
ClaI ATCGAT 1 cut(s) 209
CseI GACGC 1 cut(s) 874
CsiI ACCWGGT 1 cut(s) 325
Csp6I GTAC 1 cut(s) 768
CviAII CATG 3 cut(s) 79, 754, 847
CviQI GTAC 1 cut(s) 768
DdeI CTNAG 3 cut(s) 267, 426, 468
DpnI GATC 3 cut(s) 131, 321, 341
DpnII GATC 3 cut(s) 129, 319, 339
EaeI YGGCCR 1 cut(s) 197
Eam1104I CTCTTC 2 cut(s) 86, 510
EarI CTCTTC 2 cut(s) 86, 510
Eco130I CCWWGG 1 cut(s) 307
Eco24I GRGCYC 1 cut(s) 723
Eco47I GGWCC 3 cut(s) 193, 329, 401
Eco47III AGCGCT 1 cut(s) 162
Eco57I CTGAAG 1 cut(s) 404
Eco81I CCTNAGG 1 cut(s) 468
EcoO109I RGGNCCY 1 cut(s) 719
EcoRII CCWGG 4 cut(s) 168, 301, 325, 804
EcoT14I CCWWGG 1 cut(s) 307
EcoT38I GRGCYC 1 cut(s) 723
ErhI CCWWGG 1 cut(s) 307
FaeI CATG 3 cut(s) 82, 757, 850
FaqI GGGAC 2 cut(s) 486, 822
FatI CATG 3 cut(s) 78, 753, 846
FauNDI CATATG 1 cut(s) 639
Fnu4HI GCNGC 5 cut(s) 116, 239, 288, 461, 464
FokI GGATG 2 cut(s) 319, 726
FriOI GRGCYC 1 cut(s) 723
Fsp4HI GCNGC 5 cut(s) 116, 239, 288, 461, 464
FspBI CTAG 2 cut(s) 387, 783
GlaI GCGC 1 cut(s) 162
GluI GCNGC 5 cut(s) 116, 239, 288, 461, 464
GsaI CCCAGC 1 cut(s) 460
GsuI CTGGAG 1 cut(s) 480
HaeII RGCGCY 1 cut(s) 164
HaeIII GGCC 5 cut(s) 30, 199, 306, 721, 793
HapII CCGG 4 cut(s) 21, 35, 48, 196
HgaI GACGC 1 cut(s) 874
HhaI GCGC 1 cut(s) 163
Hin1I GRCGYC 1 cut(s) 233
Hin1II CATG 3 cut(s) 82, 757, 850
Hin6I GCGC 1 cut(s) 161
HinP1I GCGC 1 cut(s) 161
HinfI GANTC 5 cut(s) 94, 142, 211, 481, 493
HpaII CCGG 4 cut(s) 21, 35, 48, 196
HphI GGTGA 3 cut(s) 145, 821, 874
Hpy188I TCNGA 2 cut(s) 99, 480
Hpy188III TCNNGA 1 cut(s) 317
Hpy99I CGWCG 3 cut(s) 29, 238, 397
HpyAV CCTTC 4 cut(s) 447, 687, 753, 804
HpyCH4III ACNGT 1 cut(s) 382
HpyCH4IV ACGT 1 cut(s) 233
HpyCH4V TGCA 5 cut(s) 259, 353, 451, 607, 649
HpyF10VI GCNNNNNNNGC 7 cut(s) 44, 124, 247, 256, 287, 457, 865
HpyF3I CTNAG 3 cut(s) 267, 426, 468
HpySE526I ACGT 1 cut(s) 233
Hsp92I GRCGYC 1 cut(s) 233
Hsp92II CATG 3 cut(s) 82, 757, 850
HspAI GCGC 1 cut(s) 161
Kzo9I GATC 3 cut(s) 129, 319, 339
LmnI GCTCC 2 cut(s) 295, 352
Lsp1109I GCAGC 5 cut(s) 127, 250, 299, 472, 475
MabI ACCWGGT 1 cut(s) 325
MaeI CTAG 2 cut(s) 387, 783
MaeII ACGT 1 cut(s) 233
MaeIII GTNAC 3 cut(s) 229, 827, 862
MalI GATC 3 cut(s) 131, 321, 341
MboI GATC 3 cut(s) 129, 319, 339
MboII GAAGA 5 cut(s) 70, 103, 410, 497, 546
MflI RGATCY 2 cut(s) 129, 339
MhlI GDGCHC 1 cut(s) 723
MluCI AATT 2 cut(s) 177, 724
MlyI GAGTC 2 cut(s) 103, 487
MmeI TCCRAC 2 cut(s) 560, 760
MseI TTAA 1 cut(s) 414
MspI CCGG 4 cut(s) 21, 35, 48, 196
MspR9I CCNGG 4 cut(s) 170, 303, 327, 806
Mva1269I GAATGC 1 cut(s) 241
MvaI CCWGG 4 cut(s) 170, 303, 327, 806
MwoI GCNNNNNNNGC 7 cut(s) 44, 124, 247, 256, 287, 457, 865
NdeI CATATG 1 cut(s) 639
NdeII GATC 3 cut(s) 129, 319, 339
NlaIII CATG 3 cut(s) 82, 757, 850
NlaIV GGNNCC 2 cut(s) 720, 721
NmuCI GTSAC 3 cut(s) 229, 827, 862
PasI CCCWGGG 1 cut(s) 805
PctI GAATGC 1 cut(s) 241
PfeI GAWTC 3 cut(s) 142, 211, 481
PkrI GCNGC 5 cut(s) 117, 240, 289, 462, 465
PleI GAGTC 2 cut(s) 102, 487
PpsI GAGTC 2 cut(s) 102, 487
Psp6I CCWGG 4 cut(s) 168, 301, 325, 804
PspFI CCCAGC 1 cut(s) 456
PspGI CCWGG 4 cut(s) 168, 301, 325, 804
PspN4I GGNNCC 2 cut(s) 720, 721
PspOMI GGGCCC 1 cut(s) 719
PspPI GGNCC 6 cut(s) 193, 329, 401, 719, 720, 791
PsrI GAACNNNNNNTAC 2 cut(s) 53, 85
PstI CTGCAG 1 cut(s) 453
PstNI CAGNNNCTG 1 cut(s) 859
PsuI RGATCY 2 cut(s) 129, 339
RsaI GTAC 1 cut(s) 769
RsaNI GTAC 1 cut(s) 768
SaqAI TTAA 1 cut(s) 414
SatI GCNGC 5 cut(s) 116, 239, 288, 461, 464
Sau3AI GATC 3 cut(s) 129, 319, 339
Sau96I GGNCC 6 cut(s) 193, 329, 401, 719, 720, 791
SchI GAGTC 2 cut(s) 103, 487
ScrFI CCNGG 4 cut(s) 170, 303, 327, 806
SduI GDGCHC 1 cut(s) 723
SexAI ACCWGGT 1 cut(s) 325
SfcI CTRYAG 2 cut(s) 378, 449
SinI GGWCC 3 cut(s) 193, 329, 401
SpeI ACTAGT 1 cut(s) 782
Sse9I AATT 2 cut(s) 177, 724
SsiI CCGC 2 cut(s) 5, 146
SspMI CTAG 2 cut(s) 387, 783
StyD4I CCNGG 4 cut(s) 168, 301, 325, 804
StyI CCWWGG 1 cut(s) 307
TaaI ACNGT 1 cut(s) 382
TaiI ACGT 1 cut(s) 236
TaqI TCGA 2 cut(s) 56, 209
TasI AATT 2 cut(s) 177, 724
TfiI GAWTC 3 cut(s) 142, 211, 481
Tru1I TTAA 1 cut(s) 414
Tru9I TTAA 1 cut(s) 414
TscAI CASTG 2 cut(s) 234, 387
TseFI GTSAC 3 cut(s) 229, 827, 862
TseI GCWGC 5 cut(s) 115, 238, 287, 460, 463
Tsp45I GTSAC 3 cut(s) 229, 827, 862
TspDTI ATGAA 5 cut(s) 104, 429, 563, 749, 786
TspRI CASTG 2 cut(s) 234, 387
VpaK11BI GGWCC 3 cut(s) 193, 329, 401
XspI CTAG 2 cut(s) 387, 783
ZraI GACGTC 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.