Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007345

Physical Location & Seq

Genomic Coordinates Forward (+)

27965534 .. 27967926

Gene Structure 2393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G74410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGATACGACCCTTTCTCCCGCCGTGGAGGCGGAACAAATCGCCGACTCAACGATCGACACTGTTTCTCGTTTGATCGCCGGCGTTTTCTCCGGCGCACTTACTGGAATCTTCGCTATGGCTGGAGCTTTTACTGGAGCTGTAACTGGTGCGGTGGCAGGAAGAGCTGCACAGTATGGAGTTCTCCGTGGGGCTGCACTTGGCGCTGTTGCTGGAGCTATCCTCTCTGTTGAAGTGTTGGAGGCTTCTCGTGCGTATTGGTATTTAGAGCTGTCAGGATCAAGGGGTCCATCATCTATGGCAGATTTTGTAGAGCAACTGTTTCGTGGGAGACTGGTAGATGAACAACTTATGTCAACAATGATAAATTCACACCATTGGCAGTTAAGGATTTCCGATGTAAGTTATGAAGAGCGGGAGGATGTTTATGGTGAACTGGAAGCTAGAGGCTTATCGGGTGACTCTTTAAGGAAACTACCATGCTATATAATGTCAAGTGAAATGGTCAGGAGGCAGGTCACTCACTGCACAATTTGTCTGCAGGACATCAAAACAGGGGAAATCACACGAAGCTTACCGAAATGTGATCATACGTTTCATCTGGTATGTGTTGATAAATGGCTCATCAGACACGGGTCATGCCCCATTTGCAGACAGGCAGTTAAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

223

Amino Acids

24.26

Weight (kDa)

5.69

Isoelectric Point (pI)

35.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	170 - 218	2.1e-08	RING-H2 zinc finger domain
zf-RING_2	PF13639	175 - 218	9.4e-13	Ring finger domain
zf-RING_11	PF17123	176 - 204	3e-07	RING-like zinc finger
zf-C3HC4_2	PF13923	176 - 217	6e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007345)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74410
fragaria_vesca	FvH4_5g14620 FvH4_5g14620 FvH4_5g14620
malus_domestica	MD06G1196900.v1.1 MD12G1085200.v1.1 MD14G1203800.v1.1
prunus_persica	Prupe.5G197100_v2.0.a1 Prupe.5G197100_v2.0.a1 Prupe.5G197100_v2.0.a1
pyrus_communis	pycom04g11620 pycom14g16860
rosa_chinensis	RchiOBHm_Chr7g0181871
rosa_laevigata	RLG00000005167
rosa_multiflora	Rmu_sc0021327.1_g000006
rosa_roxburghii	Rroxscaffold_3G00271680
rosa_rugosa	Rorug06G0444400 Rorug06G0444500 Rorug06G0444600 Rorug06G0444700
rosa_samantha	Rh7AG046900 Rh7BG046500 Rh7CG047000 Rh7DG046100
rosa_wichuraiana	Rw7G003880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	505
AccBSI	CCGCTC	1 cut(s)	415
AciI	CCGC	4 cut(s)	21, 32, 152, 415
AclWI	GGATC	1 cut(s)	286
AcsI	RAATTY	1 cut(s)	367
AgsI	TTSAA	1 cut(s)	233
AluBI	AGCT	7 cut(s)	128, 140, 167, 218, 271, 443, 573
AluI	AGCT	7 cut(s)	128, 140, 167, 218, 271, 443, 573
Alw26I	GTCTC	1 cut(s)	325
AlwI	GGATC	1 cut(s)	286
ApeKI	GCWGC	2 cut(s)	167, 194
ApoI	RAATTY	1 cut(s)	367
AspLEI	GCGC	2 cut(s)	98, 206
AspS9I	GGNCC	1 cut(s)	287
AsuHPI	GGTGA	2 cut(s)	443, 470
AvaII	GGWCC	1 cut(s)	287
BauI	CACGAG	1 cut(s)	249
BbvI	GCAGC	2 cut(s)	154, 181
BccI	CCATC	1 cut(s)	298
BceAI	ACGGC	1 cut(s)	8
BcgI	CGANNNNNNTGC	2 cut(s)	305, 339
BclI	TGATCA	1 cut(s)	586
BcoDI	GTCTC	1 cut(s)	325
BfaI	CTAG	1 cut(s)	444
BfmI	CTRYAG	1 cut(s)	539
BfoI	RGCGCY	1 cut(s)	207
BfuAI	ACCTGC	1 cut(s)	505
BglI	GCCNNNNNGGC	1 cut(s)	29
BisI	GCNGC	2 cut(s)	168, 195
BlsI	GCNGC	2 cut(s)	169, 196
Bme18I	GGWCC	1 cut(s)	287
BmgT120I	GGNCC	1 cut(s)	287
BmiI	GGNNCC	1 cut(s)	288
BoxI	GACNNNNGTC	1 cut(s)	634
BplI	GAGNNNNNCTC	2 cut(s)	207, 239
BpmI	CTGGAG	3 cut(s)	144, 156, 234
BsaJI	CCNNGG	2 cut(s)	24, 187
BsaXI	ACNNNNNCTCC	1 cut(s)	31
Bse118I	RCCGGY	1 cut(s)	80
Bse1I	ACTGG	5 cut(s)	109, 139, 151, 339, 441
BseDI	CCNNGG	2 cut(s)	24, 187
BseGI	GGATG	1 cut(s)	427
BseNI	ACTGG	5 cut(s)	109, 139, 151, 339, 441
BseXI	GCAGC	2 cut(s)	154, 181
BsgI	GTGCAG	3 cut(s)	153, 180, 511
Bsh1285I	CGRYCG	1 cut(s)	57
BsiEI	CGRYCG	1 cut(s)	57
BsiSI	CCGG	2 cut(s)	81, 93
BsmAI	GTCTC	1 cut(s)	325
Bsp143I	GATC	4 cut(s)	54, 75, 278, 586
BspACI	CCGC	4 cut(s)	21, 32, 152, 415
BspLI	GGNNCC	1 cut(s)	288
BspMAI	CTGCAG	1 cut(s)	543
BspMI	ACCTGC	1 cut(s)	505
BspPI	GGATC	1 cut(s)	286
BspQI	GCTCTTC	2 cut(s)	157, 405
BsrBI	CCGCTC	1 cut(s)	415
BsrFI	RCCGGY	1 cut(s)	80
BsrI	ACTGG	5 cut(s)	109, 139, 151, 339, 441
BssAI	RCCGGY	1 cut(s)	80
BssECI	CCNNGG	2 cut(s)	24, 187
BssMI	GATC	4 cut(s)	54, 75, 278, 586
BssSI	CACGAG	1 cut(s)	249
Bst2BI	CACGAG	1 cut(s)	249
Bst4CI	ACNGT	3 cut(s)	64, 174, 321
Bst6I	CTCTTC	2 cut(s)	157, 405
BstC8I	GCNNGC	1 cut(s)	82
BstDSI	CCRYGG	2 cut(s)	24, 187
BstF5I	GGATG	1 cut(s)	427
BstH2I	RGCGCY	1 cut(s)	207
BstHHI	GCGC	2 cut(s)	98, 206
BstKTI	GATC	4 cut(s)	57, 78, 281, 589
BstMAI	GTCTC	1 cut(s)	325
BstMBI	GATC	4 cut(s)	54, 75, 278, 586
BstMCI	CGRYCG	1 cut(s)	57
BstMWI	GCNNNNNNNGC	5 cut(s)	29, 164, 203, 251, 648
BstPAI	GACNNNNGTC	1 cut(s)	634
BstSFI	CTRYAG	1 cut(s)	539
BstV1I	GCAGC	2 cut(s)	154, 181
BtgI	CCRYGG	2 cut(s)	24, 187
BtsCI	GGATG	1 cut(s)	427
BtsI	GCAGTG	1 cut(s)	523
BtsIMutI	CAGTG	2 cut(s)	60, 523
BveI	ACCTGC	1 cut(s)	505
Cac8I	GCNNGC	1 cut(s)	82
CfoI	GCGC	2 cut(s)	98, 206
Cfr10I	RCCGGY	1 cut(s)	80
Cfr13I	GGNCC	1 cut(s)	287
CviAII	CATG	2 cut(s)	480, 639
DpnI	GATC	4 cut(s)	56, 77, 280, 588
DpnII	GATC	4 cut(s)	54, 75, 278, 586
Eam1104I	CTCTTC	2 cut(s)	157, 405
EarI	CTCTTC	2 cut(s)	157, 405
EciI	GGCGGA	1 cut(s)	47
Eco47I	GGWCC	1 cut(s)	287
FaeI	CATG	2 cut(s)	483, 642
FatI	CATG	2 cut(s)	479, 638
FauI	CCCGC	2 cut(s)	28, 408
FbaI	TGATCA	1 cut(s)	586
Fnu4HI	GCNGC	2 cut(s)	168, 195
FokI	GGATG	1 cut(s)	434
Fsp4HI	GCNGC	2 cut(s)	168, 195
FspBI	CTAG	1 cut(s)	444
GlaI	GCGC	2 cut(s)	97, 205
GluI	GCNGC	2 cut(s)	168, 195
GsuI	CTGGAG	3 cut(s)	144, 156, 234
HaeII	RGCGCY	1 cut(s)	207
HapII	CCGG	2 cut(s)	81, 93
HhaI	GCGC	2 cut(s)	98, 206
Hin1II	CATG	2 cut(s)	483, 642
Hin6I	GCGC	2 cut(s)	96, 204
HinP1I	GCGC	2 cut(s)	96, 204
HincII	GTYRAC	1 cut(s)	357
HindII	GTYRAC	1 cut(s)	357
HindIII	AAGCTT	1 cut(s)	571
HinfI	GANTC	3 cut(s)	47, 108, 461
HpaII	CCGG	2 cut(s)	81, 93
HphI	GGTGA	2 cut(s)	443, 470
Hpy166II	GTNNAC	2 cut(s)	357, 434
Hpy188I	TCNGA	2 cut(s)	397, 629
Hpy188III	TCNNGA	2 cut(s)	276, 508
Hpy8I	GTNNAC	2 cut(s)	357, 434
HpyCH4III	ACNGT	3 cut(s)	64, 174, 321
HpyCH4IV	ACGT	1 cut(s)	593
HpyCH4V	TGCA	5 cut(s)	170, 197, 528, 541, 651
HpyF10VI	GCNNNNNNNGC	5 cut(s)	29, 164, 203, 251, 648
HpySE526I	ACGT	1 cut(s)	593
Hsp92II	CATG	2 cut(s)	483, 642
HspAI	GCGC	2 cut(s)	96, 204
KroI	GCCGGC	1 cut(s)	80
KroNI	GCCGGC	1 cut(s)	82
Ksp22I	TGATCA	1 cut(s)	586
Kzo9I	GATC	4 cut(s)	54, 75, 278, 586
LguI	GCTCTTC	2 cut(s)	157, 405
LmnI	GCTCC	3 cut(s)	125, 137, 215
Lsp1109I	GCAGC	2 cut(s)	154, 181
MaeI	CTAG	1 cut(s)	444
MaeII	ACGT	1 cut(s)	593
MaeIII	GTNAC	3 cut(s)	142, 458, 517
MalI	GATC	4 cut(s)	56, 77, 280, 588
MbiI	CCGCTC	1 cut(s)	415
MboI	GATC	4 cut(s)	54, 75, 278, 586
MboII	GAAGA	3 cut(s)	103, 174, 422
MluCI	AATT	2 cut(s)	367, 531
MlyI	GAGTC	2 cut(s)	41, 455
MmeI	TCCRAC	1 cut(s)	219
MnlI	CCTC	6 cut(s)	22, 233, 235, 412, 440, 504
MreI	CGCCGGCG	1 cut(s)	80
MroNI	GCCGGC	1 cut(s)	80
MseI	TTAA	4 cut(s)	386, 467, 663, 670
MspI	CCGG	2 cut(s)	81, 93
MwoI	GCNNNNNNNGC	5 cut(s)	29, 164, 203, 251, 648
NaeI	GCCGGC	1 cut(s)	82
NdeII	GATC	4 cut(s)	54, 75, 278, 586
NgoMIV	GCCGGC	1 cut(s)	80
NlaIII	CATG	2 cut(s)	483, 642
NlaIV	GGNNCC	1 cut(s)	288
NmuCI	GTSAC	2 cut(s)	458, 517
PciSI	GCTCTTC	2 cut(s)	157, 405
PdiI	GCCGGC	1 cut(s)	82
PfeI	GAWTC	1 cut(s)	108
PkrI	GCNGC	2 cut(s)	169, 196
Ple19I	CGATCG	1 cut(s)	57
PleI	GAGTC	2 cut(s)	41, 455
PpsI	GAGTC	2 cut(s)	41, 455
PshAI	GACNNNNGTC	1 cut(s)	634
PspN4I	GGNNCC	1 cut(s)	288
PspPI	GGNCC	1 cut(s)	287
PstI	CTGCAG	1 cut(s)	543
PvuI	CGATCG	1 cut(s)	57
SapI	GCTCTTC	2 cut(s)	157, 405
SaqAI	TTAA	4 cut(s)	386, 467, 663, 670
SatI	GCNGC	2 cut(s)	168, 195
Sau3AI	GATC	4 cut(s)	54, 75, 278, 586
Sau96I	GGNCC	1 cut(s)	287
SchI	GAGTC	2 cut(s)	41, 455
SetI	ASST	9 cut(s)	130, 142, 169, 220, 273, 445, 519, 575, 596
SfcI	CTRYAG	1 cut(s)	539
SgrAI	CRCCGGYG	1 cut(s)	80
SinI	GGWCC	1 cut(s)	287
Sse9I	AATT	2 cut(s)	367, 531
SsiI	CCGC	4 cut(s)	21, 32, 152, 415
SspMI	CTAG	1 cut(s)	444
TaaI	ACNGT	3 cut(s)	64, 174, 321
TaiI	ACGT	1 cut(s)	596
TaqI	TCGA	1 cut(s)	57
TasI	AATT	2 cut(s)	367, 531
TfiI	GAWTC	1 cut(s)	108
Tru1I	TTAA	4 cut(s)	386, 467, 663, 670
Tru9I	TTAA	4 cut(s)	386, 467, 663, 670
TscAI	CASTG	2 cut(s)	67, 530
TseFI	GTSAC	2 cut(s)	458, 517
TseI	GCWGC	2 cut(s)	167, 194
Tsp45I	GTSAC	2 cut(s)	458, 517
TspDTI	ATGAA	3 cut(s)	357, 423, 587
TspGWI	ACGGA	1 cut(s)	176
TspRI	CASTG	2 cut(s)	67, 530
VpaK11BI	GGWCC	1 cut(s)	287
XapI	RAATTY	1 cut(s)	367
XspI	CTAG	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.