Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0007345

Physical Location & Seq

Genomic Coordinates Reverse (-)

19021643 .. 19023663

Gene Structure 2021 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g16860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGTATCCCAAATATTTAATCTTTATTATTATTTCTGTTACCTGTACTGTATTTTGTACAAGCGGTTTTCTGGAGCAGCAGCAAAAAGCCCCCAACTTTCGAGCAATCCGACGCCCTTTTTGGCCGTTATGGAGAGCGGAGAGCTCCAAAGAGTCGGAGTCGTTCAACGCGTTCCGCTCCTCATCGTCAACTTCGTTGCTGGGGCTCTGGTTTTACTTTTTGCTCTTGCTGGATTTTTCACAGGAGGTATTGCTGGTGCTTTAGCTGGGAAGGCTTCTGATAGTGGTGTTGTCCGTGGAGCTGGATTGGGTGCTGTTGCTGGGGCGGTACTGTCTGTTGAGCTTTTAGAGGCGTCGCGCGATTTACTGTGTCTAGGCCGGCCTGGCGCTCGGAGATCTTCATTGATGGCAGAAATTACAGAGGAGCTTATCTGTTGGAGATTCGAGGAGGTAAACTTAGCACTGCCGGAAGTGGGACTTGCCAACCAGGTTACCCTTGCTGATCTTAACCATAATGTCTATGGAGGAGCTGAAACCAGGGGGTTGTCAAGGAATGTTATGAACAAACTACCATCTCATGTAGTTTCGGAGGATACCAAGGCAGCTCGGGGTTGCTGCTGTACGATATGTTTGCAGGATGTTGAAGTAGGAGAAATTGTGAGGACGCTGCCCCTGTGTCAGCATACGTTTCACTTGGCGTGCGTGGACAAGTGGCTCAGCAGACACGCTTTGTGCCCTCTATGCCGACGAGATGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

253

Amino Acids

27.17

Weight (kDa)

7.5

Isoelectric Point (pI)

43.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	206 - 249	3e-11	Ring finger domain
zf-RING_11	PF17123	207 - 235	3.2e-09	RING-like zinc finger
zf-rbx1	PF12678	207 - 249	2.4e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007345)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74410
fragaria_vesca	FvH4_5g14620 FvH4_5g14620 FvH4_5g14620
malus_domestica	MD06G1196900.v1.1 MD12G1085200.v1.1 MD14G1203800.v1.1
prunus_persica	Prupe.5G197100_v2.0.a1 Prupe.5G197100_v2.0.a1 Prupe.5G197100_v2.0.a1
pyrus_communis	pycom04g11620 pycom14g16860
rosa_chinensis	RchiOBHm_Chr7g0181871
rosa_laevigata	RLG00000005167
rosa_multiflora	Rmu_sc0021327.1_g000006
rosa_roxburghii	Rroxscaffold_3G00271680
rosa_rugosa	Rorug06G0444400 Rorug06G0444500 Rorug06G0444600 Rorug06G0444700
rosa_samantha	Rh7AG046900 Rh7BG046500 Rh7CG047000 Rh7DG046100
rosa_wichuraiana	Rw7G003880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	138, 178
AccII	CGCG	3 cut(s)	171, 358, 360
AciI	CCGC	4 cut(s)	64, 138, 176, 326
AcoI	YGGCCR	1 cut(s)	123
AcyI	GRCGYC	2 cut(s)	113, 353
AfaI	GTAC	4 cut(s)	47, 59, 330, 622
AfiI	CCNNNNNNNGG	1 cut(s)	473
AflIII	ACRYGT	1 cut(s)	169
AgsI	TTSAA	2 cut(s)	167, 644
AjnI	CCWGG	3 cut(s)	382, 486, 536
AluBI	AGCT	7 cut(s)	145, 266, 302, 343, 427, 530, 605
AluI	AGCT	7 cut(s)	145, 266, 302, 343, 427, 530, 605
Alw21I	GWGCWC	1 cut(s)	147
Ama87I	CYCGRG	1 cut(s)	606
AoxI	GGCC	3 cut(s)	123, 376, 380
ApeKI	GCWGC	5 cut(s)	77, 80, 602, 615, 667
ArsI	GACNNNNNNTTYG	2 cut(s)	103, 135
AspLEI	GCGC	2 cut(s)	360, 389
AvaI	CYCGRG	1 cut(s)	606
BaeGI	GKGCMC	1 cut(s)	737
BanII	GRGCYC	2 cut(s)	147, 208
Bbv12I	GWGCWC	1 cut(s)	147
BbvI	GCAGC	5 cut(s)	89, 92, 602, 614, 654
BccI	CCATC	2 cut(s)	400, 580
BceAI	ACGGC	1 cut(s)	110
BcgI	CGANNNNNNTGC	2 cut(s)	613, 647
BciT130I	CCWGG	3 cut(s)	384, 488, 538
BciVI	GTATCC	2 cut(s)	16, 586
BfaI	CTAG	1 cut(s)	374
BfoI	RGCGCY	1 cut(s)	390
BfuI	GTATCC	2 cut(s)	16, 586
BglI	GCCNNNNNGGC	1 cut(s)	384
BglII	AGATCT	1 cut(s)	395
BisI	GCNGC	5 cut(s)	78, 81, 603, 616, 668
BlpI	GCTNAGC	1 cut(s)	716
BlsI	GCNGC	5 cut(s)	79, 82, 604, 617, 669
Bme1390I	CCNGG	3 cut(s)	384, 488, 538
BmeT110I	CYCGRG	1 cut(s)	606
BmrFI	CCNGG	3 cut(s)	384, 488, 538
BpmI	CTGGAG	1 cut(s)	93
Bpu1102I	GCTNAGC	1 cut(s)	716
BsaHI	GRCGYC	2 cut(s)	113, 353
BsaJI	CCNNGG	3 cut(s)	295, 537, 597
BsaXI	ACNNNNNCTCC	2 cut(s)	642, 672
Bsc4I	CCNNNNNNNGG	1 cut(s)	473
Bse118I	RCCGGY	1 cut(s)	378
BseBI	CCWGG	3 cut(s)	384, 488, 538
BseDI	CCNNGG	3 cut(s)	295, 537, 597
BseGI	GGATG	1 cut(s)	643
BseLI	CCNNNNNNNGG	1 cut(s)	473
BseMII	CTCAG	1 cut(s)	730
BseRI	GAGGAG	4 cut(s)	170, 437, 461, 540
BseSI	GKGCMC	1 cut(s)	737
BseXI	GCAGC	5 cut(s)	89, 92, 602, 614, 654
BseYI	CCCAGC	3 cut(s)	200, 266, 320
Bsh1236I	CGCG	3 cut(s)	171, 358, 360
BshFI	GGCC	3 cut(s)	125, 378, 382
BsiHKAI	GWGCWC	1 cut(s)	147
BsiHKCI	CYCGRG	1 cut(s)	606
BsiSI	CCGG	2 cut(s)	379, 467
BslFI	GGGAC	1 cut(s)	489
BslI	CCNNNNNNNGG	1 cut(s)	473
BsmFI	GGGAC	1 cut(s)	489
BsnI	GGCC	3 cut(s)	125, 378, 382
BsoBI	CYCGRG	1 cut(s)	606
Bsp1286I	GDGCHC	3 cut(s)	147, 208, 737
Bsp1407I	TGTACA	1 cut(s)	57
Bsp143I	GATC	2 cut(s)	395, 502
Bsp1720I	GCTNAGC	1 cut(s)	716
BspACI	CCGC	4 cut(s)	64, 138, 176, 326
BspANI	GGCC	3 cut(s)	125, 378, 382
BspCNI	CTCAG	1 cut(s)	729
BspFNI	CGCG	3 cut(s)	171, 358, 360
BsrBI	CCGCTC	2 cut(s)	138, 178
BsrFI	RCCGGY	1 cut(s)	378
BsrGI	TGTACA	1 cut(s)	57
BssAI	RCCGGY	1 cut(s)	378
BssECI	CCNNGG	3 cut(s)	295, 537, 597
BssMI	GATC	2 cut(s)	395, 502
BssNI	GRCGYC	2 cut(s)	113, 353
BssT1I	CCWWGG	1 cut(s)	597
Bst2UI	CCWGG	3 cut(s)	384, 488, 538
Bst4CI	ACNGT	3 cut(s)	50, 333, 369
BstACI	GRCGYC	2 cut(s)	113, 353
BstAUI	TGTACA	1 cut(s)	57
BstC8I	GCNNGC	2 cut(s)	380, 700
BstDEI	CTNAG	2 cut(s)	457, 716
BstDSI	CCRYGG	1 cut(s)	295
BstEII	GGTNACC	1 cut(s)	490
BstF5I	GGATG	1 cut(s)	643
BstFNI	CGCG	3 cut(s)	171, 358, 360
BstH2I	RGCGCY	1 cut(s)	390
BstHHI	GCGC	2 cut(s)	360, 389
BstKTI	GATC	2 cut(s)	398, 505
BstMBI	GATC	2 cut(s)	395, 502
BstMWI	GCNNNNNNNGC	3 cut(s)	272, 384, 741
BstNI	CCWGG	3 cut(s)	384, 488, 538
BstPI	GGTNACC	1 cut(s)	490
BstSCI	CCNGG	3 cut(s)	382, 486, 536
BstSLI	GKGCMC	1 cut(s)	737
BstUI	CGCG	3 cut(s)	171, 358, 360
BstV1I	GCAGC	5 cut(s)	89, 92, 602, 614, 654
BstX2I	RGATCY	1 cut(s)	395
BstYI	RGATCY	1 cut(s)	395
BsuI	GTATCC	2 cut(s)	16, 586
BsuRI	GGCC	3 cut(s)	125, 378, 382
BtgI	CCRYGG	1 cut(s)	295
BtsCI	GGATG	1 cut(s)	643
BtsI	GCAGTG	1 cut(s)	461
BtsIMutI	CAGTG	1 cut(s)	461
Cac8I	GCNNGC	2 cut(s)	380, 700
CfoI	GCGC	2 cut(s)	360, 389
Cfr10I	RCCGGY	1 cut(s)	378
CseI	GACGC	3 cut(s)	121, 342, 673
CsiI	ACCWGGT	1 cut(s)	486
Csp6I	GTAC	4 cut(s)	46, 58, 329, 621
CviAII	CATG	1 cut(s)	578
CviQI	GTAC	4 cut(s)	46, 58, 329, 621
DdeI	CTNAG	2 cut(s)	457, 716
DpnI	GATC	2 cut(s)	397, 504
DpnII	GATC	2 cut(s)	395, 502
EaeI	YGGCCR	1 cut(s)	123
Ecl136II	GAGCTC	1 cut(s)	145
Eco130I	CCWWGG	1 cut(s)	597
Eco24I	GRGCYC	2 cut(s)	147, 208
Eco53kI	GAGCTC	1 cut(s)	145
Eco88I	CYCGRG	1 cut(s)	606
Eco91I	GGTNACC	1 cut(s)	490
EcoICRI	GAGCTC	1 cut(s)	145
EcoO65I	GGTNACC	1 cut(s)	490
EcoRII	CCWGG	3 cut(s)	382, 486, 536
EcoT14I	CCWWGG	1 cut(s)	597
EcoT38I	GRGCYC	2 cut(s)	147, 208
ErhI	CCWWGG	1 cut(s)	597
FaeI	CATG	1 cut(s)	581
FaiI	YATR	8 cut(s)	131, 513, 522, 560, 579, 628, 684, 742
FalI	AAGNNNNNCTT	2 cut(s)	462, 494
FaqI	GGGAC	1 cut(s)	489
FatI	CATG	1 cut(s)	577
Fnu4HI	GCNGC	5 cut(s)	78, 81, 603, 616, 668
FokI	GGATG	1 cut(s)	650
FriOI	GRGCYC	2 cut(s)	147, 208
FseI	GGCCGGCC	1 cut(s)	382
Fsp4HI	GCNGC	5 cut(s)	78, 81, 603, 616, 668
FspBI	CTAG	1 cut(s)	374
GlaI	GCGC	2 cut(s)	359, 388
GluI	GCNGC	5 cut(s)	78, 81, 603, 616, 668
GsaI	CCCAGC	3 cut(s)	204, 270, 324
GsuI	CTGGAG	1 cut(s)	93
HaeII	RGCGCY	1 cut(s)	390
HaeIII	GGCC	3 cut(s)	125, 378, 382
HapII	CCGG	2 cut(s)	379, 467
HgaI	GACGC	3 cut(s)	121, 342, 673
HhaI	GCGC	2 cut(s)	360, 389
Hin1I	GRCGYC	2 cut(s)	113, 353
Hin1II	CATG	1 cut(s)	581
Hin6I	GCGC	2 cut(s)	358, 387
HinP1I	GCGC	2 cut(s)	358, 387
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HinfI	GANTC	3 cut(s)	153, 159, 441
HpaII	CCGG	2 cut(s)	379, 467
Hpy166II	GTNNAC	3 cut(s)	190, 454, 706
Hpy188I	TCNGA	5 cut(s)	111, 158, 280, 393, 589
Hpy188III	TCNNGA	1 cut(s)	72
Hpy8I	GTNNAC	3 cut(s)	190, 454, 706
Hpy99I	CGWCG	3 cut(s)	115, 358, 750
HpyAV	CCTTC	1 cut(s)	265
HpyCH4III	ACNGT	3 cut(s)	50, 333, 369
HpyCH4IV	ACGT	1 cut(s)	686
HpyCH4V	TGCA	1 cut(s)	634
HpyF10VI	GCNNNNNNNGC	3 cut(s)	272, 384, 741
HpyF3I	CTNAG	2 cut(s)	457, 716
HpySE526I	ACGT	1 cut(s)	686
Hsp92I	GRCGYC	2 cut(s)	113, 353
Hsp92II	CATG	1 cut(s)	581
HspAI	GCGC	2 cut(s)	358, 387
KroI	GCCGGC	1 cut(s)	378
KroNI	GCCGGC	1 cut(s)	380
Kzo9I	GATC	2 cut(s)	395, 502
LmnI	GCTCC	6 cut(s)	74, 150, 183, 299, 424, 527
Lsp1109I	GCAGC	5 cut(s)	89, 92, 602, 614, 654
MabI	ACCWGGT	1 cut(s)	486
MaeI	CTAG	1 cut(s)	374
MaeII	ACGT	1 cut(s)	686
MaeIII	GTNAC	2 cut(s)	38, 490
MalI	GATC	2 cut(s)	397, 504
MbiI	CCGCTC	2 cut(s)	138, 178
MboI	GATC	2 cut(s)	395, 502
MboII	GAAGA	1 cut(s)	390
MflI	RGATCY	1 cut(s)	395
MhlI	GDGCHC	3 cut(s)	147, 208, 737
MluCI	AATT	2 cut(s)	414, 654
MluI	ACGCGT	1 cut(s)	169
MlyI	GAGTC	2 cut(s)	162, 168
MmeI	TCCRAC	3 cut(s)	134, 136, 416
MroNI	GCCGGC	1 cut(s)	378
MseI	TTAA	2 cut(s)	18, 507
MspI	CCGG	2 cut(s)	379, 467
MspR9I	CCNGG	3 cut(s)	384, 488, 538
MvaI	CCWGG	3 cut(s)	384, 488, 538
MvnI	CGCG	3 cut(s)	171, 358, 360
MwoI	GCNNNNNNNGC	3 cut(s)	272, 384, 741
NaeI	GCCGGC	1 cut(s)	380
NdeII	GATC	2 cut(s)	395, 502
NgoMIV	GCCGGC	1 cut(s)	378
NlaIII	CATG	1 cut(s)	581
PcsI	WCGNNNNNNNCGW	3 cut(s)	107, 168, 192
PdiI	GCCGGC	1 cut(s)	380
PfeI	GAWTC	1 cut(s)	441
PkrI	GCNGC	5 cut(s)	79, 82, 604, 617, 669
PleI	GAGTC	2 cut(s)	161, 167
PpsI	GAGTC	2 cut(s)	161, 167
Psp124BI	GAGCTC	1 cut(s)	147
Psp6I	CCWGG	3 cut(s)	382, 486, 536
PspEI	GGTNACC	1 cut(s)	490
PspFI	CCCAGC	3 cut(s)	200, 266, 320
PspGI	CCWGG	3 cut(s)	382, 486, 536
PsuI	RGATCY	1 cut(s)	395
RigI	GGCCGGCC	1 cut(s)	382
RsaI	GTAC	4 cut(s)	47, 59, 330, 622
RsaNI	GTAC	4 cut(s)	46, 58, 329, 621
SacI	GAGCTC	1 cut(s)	147
SaqAI	TTAA	2 cut(s)	18, 507
SatI	GCNGC	5 cut(s)	78, 81, 603, 616, 668
Sau3AI	GATC	2 cut(s)	395, 502
SchI	GAGTC	2 cut(s)	162, 168
ScrFI	CCNGG	3 cut(s)	384, 488, 538
SduI	GDGCHC	3 cut(s)	147, 208, 737
SexAI	ACCWGGT	1 cut(s)	486
Sse9I	AATT	2 cut(s)	414, 654
SsiI	CCGC	4 cut(s)	64, 138, 176, 326
SspI	AATATT	1 cut(s)	15
SspMI	CTAG	1 cut(s)	374
SstI	GAGCTC	1 cut(s)	147
StyD4I	CCNGG	3 cut(s)	382, 486, 536
StyI	CCWWGG	1 cut(s)	597
TaaI	ACNGT	3 cut(s)	50, 333, 369
TaiI	ACGT	1 cut(s)	689
TaqI	TCGA	2 cut(s)	101, 444
TasI	AATT	2 cut(s)	414, 654
TatI	WGTACW	2 cut(s)	45, 57
TfiI	GAWTC	1 cut(s)	441
Tru1I	TTAA	2 cut(s)	18, 507
Tru9I	TTAA	2 cut(s)	18, 507
TscAI	CASTG	1 cut(s)	468
TseI	GCWGC	5 cut(s)	77, 80, 602, 615, 667
TspDTI	ATGAA	2 cut(s)	390, 575
TspGWI	ACGGA	1 cut(s)	284
TspRI	CASTG	1 cut(s)	468
XcmI	CCANNNNNNNNNTGG	1 cut(s)	518
XspI	CTAG	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.