Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0007345

Physical Location & Seq

Genomic Coordinates Forward (+)

64004483 .. 64006555

Gene Structure 2073 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00271680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGAGAGCGGAGAGATTCAGAGGGTTGGAGTCCTTCAACGCCTTCCACTGCTTGTGATCAACTTCGTTGCTGGGACTCTGGTTCTGCTTTTTGCCCTTGCGGGATTTTTCGCAGGAGGCATTTTTGGTGCTTTAGCCGGTAAGGCTTCTGACAGTGGTATTGTTCGTGGAGCTGGATTGGGTGCTGTTGCTGGGGCTGTTCTCTCTGTGGAGATTTTGGAAGCTTCACGTGAGTTATTGCGTCTTGGTCGGCCTGGCTCACGAAGATCTTCATTGATGGCAGAAATTACAGAGGAGCTTATTTGTTGGAGATTTGAGGAGGAAAACTTACCACCGCCAGAAGTGCTAAGTGCTAGCCATTGGCAGGTTAACTTCGCTAATCTTAACCTTGATGAGATTCGTGATGGAGTAGTTGCAACCAGAGGGTTGTCAAGGGATTTGTTCAAGAAATTGCCGTATCATGAGATTCTGGGGGATGCCAAGGCAGCTCCGGTTTCCTGTTGTACGATATGTTTGCAGGATCTTGAAGTGGGAGAAACTGTAAGGACCCTGACACTCTGTCAGCATACATTTCACTTGGCTTGTGTGGACAAGTGGCTTGTTAGACATGGTTCATGCCCTTTATGCAGACAAGATGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

213

Amino Acids

23.06

Weight (kDa)

5.75

Isoelectric Point (pI)

48.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	167 - 210	7e-13	Ring finger domain
zf-rbx1	PF12678	167 - 210	6.5e-08	RING-H2 zinc finger domain
zf-RING_11	PF17123	168 - 196	2e-09	RING-like zinc finger
zf-C3HC4_2	PF13923	168 - 209	6.8e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	168 - 209	3.2e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	168 - 207	9.8e-06	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0007345)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74410
fragaria_vesca	FvH4_5g14620 FvH4_5g14620 FvH4_5g14620
malus_domestica	MD06G1196900.v1.1 MD12G1085200.v1.1 MD14G1203800.v1.1
prunus_persica	Prupe.5G197100_v2.0.a1 Prupe.5G197100_v2.0.a1 Prupe.5G197100_v2.0.a1
pyrus_communis	pycom04g11620 pycom14g16860
rosa_chinensis	RchiOBHm_Chr7g0181871
rosa_laevigata	RLG00000005167
rosa_multiflora	Rmu_sc0021327.1_g000006
rosa_roxburghii	Rroxscaffold_3G00271680
rosa_rugosa	Rorug06G0444400 Rorug06G0444500 Rorug06G0444600 Rorug06G0444700
rosa_samantha	Rh7AG046900 Rh7BG046500 Rh7CG047000 Rh7DG046100
rosa_wichuraiana	Rw7G003880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	355
AccBSI	CCGCTC	1 cut(s)	9
AciI	CCGC	3 cut(s)	9, 101, 335
AclWI	GGATC	1 cut(s)	528
AcvI	CACGTG	1 cut(s)	230
AfaI	GTAC	1 cut(s)	505
AfiI	CCNNNNNNNGG	1 cut(s)	364
AgsI	TTSAA	3 cut(s)	38, 445, 527
AhdI	GACNNNNNGTC	1 cut(s)	558
AjnI	CCWGG	1 cut(s)	253
AluBI	AGCT	4 cut(s)	173, 224, 298, 488
AluI	AGCT	4 cut(s)	173, 224, 298, 488
AlwI	GGATC	1 cut(s)	528
AoxI	GGCC	1 cut(s)	251
ApeKI	GCWGC	1 cut(s)	485
Asp700I	GAANNNNTTC	1 cut(s)	268
AspS9I	GGNCC	1 cut(s)	546
AsuNHI	GCTAGC	1 cut(s)	353
AvaII	GGWCC	1 cut(s)	546
BbrPI	CACGTG	1 cut(s)	230
BbvI	GCAGC	1 cut(s)	497
BccI	CCATC	2 cut(s)	271, 398
BceAI	ACGGC	1 cut(s)	439
BcgI	CGANNNNNNTGC	2 cut(s)	496, 530
BciT130I	CCWGG	1 cut(s)	255
BclI	TGATCA	1 cut(s)	57
BfaI	CTAG	1 cut(s)	354
BfuAI	ACCTGC	1 cut(s)	355
BglI	GCCNNNNNGGC	1 cut(s)	143
BglII	AGATCT	1 cut(s)	266
BisI	GCNGC	1 cut(s)	486
BlsI	GCNGC	1 cut(s)	487
Bme1390I	CCNGG	1 cut(s)	255
Bme18I	GGWCC	1 cut(s)	546
BmeRI	GACNNNNNGTC	1 cut(s)	558
BmgT120I	GGNCC	1 cut(s)	546
BmiI	GGNNCC	1 cut(s)	548
BmrFI	CCNGG	1 cut(s)	255
BmsI	GCATC	1 cut(s)	466
BmtI	GCTAGC	1 cut(s)	357
BsaAI	YACGTR	1 cut(s)	230
BsaJI	CCNNGG	1 cut(s)	480
BsaWI	WCCGGW	1 cut(s)	490
BsaXI	ACNNNNNCTCC	2 cut(s)	525, 555
Bsc4I	CCNNNNNNNGG	1 cut(s)	364
Bse118I	RCCGGY	1 cut(s)	137
BseBI	CCWGG	1 cut(s)	255
BseDI	CCNNGG	1 cut(s)	480
BseGI	GGATG	1 cut(s)	481
BseLI	CCNNNNNNNGG	1 cut(s)	364
BseRI	GAGGAG	2 cut(s)	308, 332
BseXI	GCAGC	1 cut(s)	497
BseYI	CCCAGC	2 cut(s)	71, 191
BshFI	GGCC	1 cut(s)	253
BsiSI	CCGG	2 cut(s)	138, 491
BslFI	GGGAC	1 cut(s)	88
BslI	CCNNNNNNNGG	1 cut(s)	364
BsmFI	GGGAC	1 cut(s)	88
BsnI	GGCC	1 cut(s)	253
Bsp143I	GATC	3 cut(s)	57, 266, 520
BspACI	CCGC	3 cut(s)	9, 101, 335
BspANI	GGCC	1 cut(s)	253
BspHI	TCATGA	1 cut(s)	460
BspLI	GGNNCC	1 cut(s)	548
BspMI	ACCTGC	1 cut(s)	355
BspOI	GCTAGC	1 cut(s)	357
BspPI	GGATC	1 cut(s)	528
BsrBI	CCGCTC	1 cut(s)	9
BsrFI	RCCGGY	1 cut(s)	137
BssAI	RCCGGY	1 cut(s)	137
BssECI	CCNNGG	1 cut(s)	480
BssMI	GATC	3 cut(s)	57, 266, 520
BssT1I	CCWWGG	1 cut(s)	480
Bst2UI	CCWGG	1 cut(s)	255
Bst4CI	ACNGT	2 cut(s)	155, 541
BstBAI	YACGTR	1 cut(s)	230
BstC8I	GCNNGC	1 cut(s)	355
BstDEI	CTNAG	1 cut(s)	347
BstF5I	GGATG	1 cut(s)	481
BstKTI	GATC	3 cut(s)	60, 269, 523
BstMBI	GATC	3 cut(s)	57, 266, 520
BstMWI	GCNNNNNNNGC	4 cut(s)	143, 343, 485, 624
BstNI	CCWGG	1 cut(s)	255
BstSCI	CCNGG	1 cut(s)	253
BstV1I	GCAGC	1 cut(s)	497
BstX2I	RGATCY	2 cut(s)	266, 520
BstYI	RGATCY	2 cut(s)	266, 520
BsuRI	GGCC	1 cut(s)	253
BtsCI	GGATG	1 cut(s)	481
BtsI	GCAGTG	1 cut(s)	47
BtsIMutI	CAGTG	2 cut(s)	47, 160
BveI	ACCTGC	1 cut(s)	355
Cac8I	GCNNGC	1 cut(s)	355
CciI	TCATGA	1 cut(s)	460
Cfr10I	RCCGGY	1 cut(s)	137
Cfr13I	GGNCC	1 cut(s)	546
CseI	GACGC	1 cut(s)	230
Csp6I	GTAC	1 cut(s)	504
CviAII	CATG	3 cut(s)	461, 608, 615
CviQI	GTAC	1 cut(s)	504
DdeI	CTNAG	1 cut(s)	347
DpnI	GATC	3 cut(s)	59, 268, 522
DpnII	GATC	3 cut(s)	57, 266, 520
DriI	GACNNNNNGTC	1 cut(s)	558
Eam1105I	GACNNNNNGTC	1 cut(s)	558
Eco130I	CCWWGG	1 cut(s)	480
Eco47I	GGWCC	1 cut(s)	546
Eco72I	CACGTG	1 cut(s)	230
EcoO109I	RGGNCCY	1 cut(s)	546
EcoRII	CCWGG	1 cut(s)	253
EcoT14I	CCWWGG	1 cut(s)	480
ErhI	CCWWGG	1 cut(s)	480
FaeI	CATG	3 cut(s)	464, 611, 618
FaiI	YATR	6 cut(s)	462, 511, 567, 609, 616, 625
FaqI	GGGAC	1 cut(s)	88
FatI	CATG	3 cut(s)	460, 607, 614
FauI	CCCGC	1 cut(s)	94
FbaI	TGATCA	1 cut(s)	57
Fnu4HI	GCNGC	1 cut(s)	486
FokI	GGATG	1 cut(s)	488
Fsp4HI	GCNGC	1 cut(s)	486
FspBI	CTAG	1 cut(s)	354
GluI	GCNGC	1 cut(s)	486
GsaI	CCCAGC	2 cut(s)	75, 195
HaeIII	GGCC	1 cut(s)	253
HapII	CCGG	2 cut(s)	138, 491
HgaI	GACGC	1 cut(s)	230
Hin1II	CATG	3 cut(s)	464, 611, 618
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HindIII	AAGCTT	1 cut(s)	222
HinfI	GANTC	5 cut(s)	16, 30, 76, 397, 466
HpaI	GTTAAC	1 cut(s)	370
HpaII	CCGG	2 cut(s)	138, 491
Hpy166II	GTNNAC	2 cut(s)	370, 589
Hpy188I	TCNGA	2 cut(s)	21, 151
Hpy188III	TCNNGA	5 cut(s)	261, 401, 445, 461, 524
Hpy8I	GTNNAC	2 cut(s)	370, 589
HpyAV	CCTTC	2 cut(s)	44, 53
HpyCH4III	ACNGT	2 cut(s)	155, 541
HpyCH4IV	ACGT	1 cut(s)	229
HpyCH4V	TGCA	3 cut(s)	416, 517, 627
HpyF10VI	GCNNNNNNNGC	4 cut(s)	143, 343, 485, 624
HpyF3I	CTNAG	1 cut(s)	347
HpySE526I	ACGT	1 cut(s)	229
Hsp92II	CATG	3 cut(s)	464, 611, 618
Ksp22I	TGATCA	1 cut(s)	57
KspAI	GTTAAC	1 cut(s)	370
Kzo9I	GATC	3 cut(s)	57, 266, 520
LmnI	GCTCC	3 cut(s)	170, 295, 493
Lsp1109I	GCAGC	1 cut(s)	497
LweI	GCATC	1 cut(s)	466
MaeI	CTAG	1 cut(s)	354
MaeII	ACGT	1 cut(s)	229
MalI	GATC	3 cut(s)	59, 268, 522
MbiI	CCGCTC	1 cut(s)	9
MboI	GATC	3 cut(s)	57, 266, 520
MboII	GAAGA	2 cut(s)	261, 276
MflI	RGATCY	2 cut(s)	266, 520
MluCI	AATT	2 cut(s)	285, 449
MlyI	GAGTC	2 cut(s)	39, 70
MmeI	TCCRAC	2 cut(s)	7, 287
MnlI	CCTC	6 cut(s)	15, 110, 286, 310, 313, 416
MroXI	GAANNNNTTC	1 cut(s)	268
MseI	TTAA	2 cut(s)	369, 384
MspI	CCGG	2 cut(s)	138, 491
MspR9I	CCNGG	1 cut(s)	255
MvaI	CCWGG	1 cut(s)	255
MwoI	GCNNNNNNNGC	4 cut(s)	143, 343, 485, 624
NdeII	GATC	3 cut(s)	57, 266, 520
NheI	GCTAGC	1 cut(s)	353
NlaIII	CATG	3 cut(s)	464, 611, 618
NlaIV	GGNNCC	1 cut(s)	548
PagI	TCATGA	1 cut(s)	460
PdmI	GAANNNNTTC	1 cut(s)	268
PfeI	GAWTC	3 cut(s)	16, 397, 466
PkrI	GCNGC	1 cut(s)	487
PleI	GAGTC	2 cut(s)	38, 70
PmaCI	CACGTG	1 cut(s)	230
PmlI	CACGTG	1 cut(s)	230
PpsI	GAGTC	2 cut(s)	38, 70
Ppu21I	YACGTR	1 cut(s)	230
PpuMI	RGGWCCY	1 cut(s)	546
Psp5II	RGGWCCY	1 cut(s)	546
Psp6I	CCWGG	1 cut(s)	253
PspCI	CACGTG	1 cut(s)	230
PspFI	CCCAGC	2 cut(s)	71, 191
PspGI	CCWGG	1 cut(s)	253
PspN4I	GGNNCC	1 cut(s)	548
PspPI	GGNCC	1 cut(s)	546
PspPPI	RGGWCCY	1 cut(s)	546
PsuI	RGATCY	2 cut(s)	266, 520
RsaI	GTAC	1 cut(s)	505
RsaNI	GTAC	1 cut(s)	504
SaqAI	TTAA	2 cut(s)	369, 384
SatI	GCNGC	1 cut(s)	486
Sau3AI	GATC	3 cut(s)	57, 266, 520
Sau96I	GGNCC	1 cut(s)	546
SchI	GAGTC	2 cut(s)	39, 70
ScrFI	CCNGG	1 cut(s)	255
SetI	ASST	7 cut(s)	175, 226, 232, 300, 369, 390, 490
SfaNI	GCATC	1 cut(s)	466
SinI	GGWCC	1 cut(s)	546
Sse9I	AATT	2 cut(s)	285, 449
SsiI	CCGC	3 cut(s)	9, 101, 335
SspMI	CTAG	1 cut(s)	354
StyD4I	CCNGG	1 cut(s)	253
StyI	CCWWGG	1 cut(s)	480
TaaI	ACNGT	2 cut(s)	155, 541
TaiI	ACGT	1 cut(s)	232
TasI	AATT	2 cut(s)	285, 449
TfiI	GAWTC	3 cut(s)	16, 397, 466
Tru1I	TTAA	2 cut(s)	369, 384
Tru9I	TTAA	2 cut(s)	369, 384
TscAI	CASTG	2 cut(s)	54, 160
TseI	GCWGC	1 cut(s)	485
TspDTI	ATGAA	2 cut(s)	261, 603
TspRI	CASTG	2 cut(s)	54, 160
VpaK11BI	GGWCC	1 cut(s)	546
XmnI	GAANNNNTTC	1 cut(s)	268
XspI	CTAG	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.