Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0007345

Physical Location & Seq

Genomic Coordinates Reverse (-)

33117482 .. 33120005

Gene Structure 2524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1196900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGAGAGCGTTGGGCTTCAAAGAGTTGGAGTCGTTCAACGTCTTCCGCTCCTCGTCGTCAACTTAGTTGCTGGGGCTCTGGTTTTGCTTTTTGCTCTTGCTGGATTTTTCACAGGAGGTATTGCTGGTGCTTTAGCTGGGAAGGCTTCTGATAGAGGTGTTGTACGTGGAGCTGGATTGGGTGCTGTTGCTGGGGCTGTGCTCTCCGTCGAGATTTTGGAGGCGTCGCGTGATCTACTGCGGCTAGGCCGCCCTGGCTGGCGGAGATCTTCATTGATGGTGAGCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

97

Amino Acids

9.82

Weight (kDa)

11.47

Isoelectric Point (pI)

31.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007345)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74410
fragaria_vesca	FvH4_5g14620 FvH4_5g14620 FvH4_5g14620
malus_domestica	MD06G1196900.v1.1 MD12G1085200.v1.1 MD14G1203800.v1.1
prunus_persica	Prupe.5G197100_v2.0.a1 Prupe.5G197100_v2.0.a1 Prupe.5G197100_v2.0.a1
pyrus_communis	pycom04g11620 pycom14g16860
rosa_chinensis	RchiOBHm_Chr7g0181871
rosa_laevigata	RLG00000005167
rosa_multiflora	Rmu_sc0021327.1_g000006
rosa_roxburghii	Rroxscaffold_3G00271680
rosa_rugosa	Rorug06G0444400 Rorug06G0444500 Rorug06G0444600 Rorug06G0444700
rosa_samantha	Rh7AG046900 Rh7BG046500 Rh7CG047000 Rh7DG046100
rosa_wichuraiana	Rw7G003880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	49
AccII	CGCG	1 cut(s)	229
AciI	CCGC	4 cut(s)	47, 241, 250, 262
AcyI	GRCGYC	1 cut(s)	224
AfaI	GTAC	1 cut(s)	165
AgsI	TTSAA	2 cut(s)	20, 38
AjnI	CCWGG	1 cut(s)	253
AluBI	AGCT	3 cut(s)	137, 173, 285
AluI	AGCT	3 cut(s)	137, 173, 285
Alw21I	GWGCWC	1 cut(s)	204
AoxI	GGCC	1 cut(s)	247
BanII	GRGCYC	1 cut(s)	79
BbsI	GAAGAC	1 cut(s)	35
Bbv12I	GWGCWC	1 cut(s)	204
BccI	CCATC	1 cut(s)	271
BciT130I	CCWGG	1 cut(s)	255
BfaI	CTAG	1 cut(s)	245
BglI	GCCNNNNNGGC	1 cut(s)	255
BglII	AGATCT	1 cut(s)	266
BisI	GCNGC	2 cut(s)	242, 250
BlsI	GCNGC	2 cut(s)	243, 251
Bme1390I	CCNGG	1 cut(s)	255
BmrFI	CCNGG	1 cut(s)	255
BpiI	GAAGAC	1 cut(s)	35
BsaAI	YACGTR	1 cut(s)	167
BsaHI	GRCGYC	1 cut(s)	224
BsaJI	CCNNGG	1 cut(s)	253
BseBI	CCWGG	1 cut(s)	255
BseDI	CCNNGG	1 cut(s)	253
BseRI	GAGGAG	1 cut(s)	41
BseYI	CCCAGC	3 cut(s)	71, 137, 191
Bsh1236I	CGCG	1 cut(s)	229
BshFI	GGCC	1 cut(s)	249
BsiHKAI	GWGCWC	1 cut(s)	204
BsnI	GGCC	1 cut(s)	249
Bsp1286I	GDGCHC	2 cut(s)	79, 204
Bsp143I	GATC	2 cut(s)	232, 266
BspACI	CCGC	4 cut(s)	47, 241, 250, 262
BspANI	GGCC	1 cut(s)	249
BspFNI	CGCG	1 cut(s)	229
BsrBI	CCGCTC	1 cut(s)	49
BssECI	CCNNGG	1 cut(s)	253
BssMI	GATC	2 cut(s)	232, 266
BssNI	GRCGYC	1 cut(s)	224
Bst2UI	CCWGG	1 cut(s)	255
BstACI	GRCGYC	1 cut(s)	224
BstBAI	YACGTR	1 cut(s)	167
BstC8I	GCNNGC	1 cut(s)	260
BstDEI	CTNAG	1 cut(s)	64
BstFNI	CGCG	1 cut(s)	229
BstKTI	GATC	2 cut(s)	235, 269
BstMBI	GATC	2 cut(s)	232, 266
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 255
BstNI	CCWGG	1 cut(s)	255
BstSCI	CCNGG	1 cut(s)	253
BstUI	CGCG	1 cut(s)	229
BstV2I	GAAGAC	1 cut(s)	35
BstX2I	RGATCY	1 cut(s)	266
BstYI	RGATCY	1 cut(s)	266
BsuRI	GGCC	1 cut(s)	249
Cac8I	GCNNGC	1 cut(s)	260
CseI	GACGC	1 cut(s)	213
Csp6I	GTAC	1 cut(s)	164
CviQI	GTAC	1 cut(s)	164
DdeI	CTNAG	1 cut(s)	64
DpnI	GATC	2 cut(s)	234, 268
DpnII	GATC	2 cut(s)	232, 266
EciI	GGCGGA	1 cut(s)	277
Eco24I	GRGCYC	1 cut(s)	79
EcoRII	CCWGG	1 cut(s)	253
EcoT38I	GRGCYC	1 cut(s)	79
Fnu4HI	GCNGC	2 cut(s)	242, 250
FriOI	GRGCYC	1 cut(s)	79
Fsp4HI	GCNGC	2 cut(s)	242, 250
FspBI	CTAG	1 cut(s)	245
GluI	GCNGC	2 cut(s)	242, 250
GsaI	CCCAGC	3 cut(s)	75, 141, 195
HaeIII	GGCC	1 cut(s)	249
HgaI	GACGC	1 cut(s)	213
Hin1I	GRCGYC	1 cut(s)	224
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HinfI	GANTC	1 cut(s)	30
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188I	TCNGA	1 cut(s)	151
Hpy188III	TCNNGA	1 cut(s)	211
Hpy8I	GTNNAC	1 cut(s)	61
Hpy99I	CGWCG	3 cut(s)	59, 212, 229
HpyAV	CCTTC	1 cut(s)	136
HpyCH4IV	ACGT	2 cut(s)	40, 166
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 255
HpyF3I	CTNAG	1 cut(s)	64
HpySE526I	ACGT	2 cut(s)	40, 166
Hsp92I	GRCGYC	1 cut(s)	224
Kzo9I	GATC	2 cut(s)	232, 266
LmnI	GCTCC	2 cut(s)	54, 170
MaeI	CTAG	1 cut(s)	245
MaeII	ACGT	2 cut(s)	40, 166
MalI	GATC	2 cut(s)	234, 268
MbiI	CCGCTC	1 cut(s)	49
MboI	GATC	2 cut(s)	232, 266
MboII	GAAGA	2 cut(s)	35, 261
MflI	RGATCY	1 cut(s)	266
MhlI	GDGCHC	2 cut(s)	79, 204
MlyI	GAGTC	1 cut(s)	39
MmeI	TCCRAC	1 cut(s)	7
MnlI	CCTC	4 cut(s)	62, 110, 149, 214
MseI	TTAA	1 cut(s)	289
MspR9I	CCNGG	1 cut(s)	255
MvaI	CCWGG	1 cut(s)	255
MvnI	CGCG	1 cut(s)	229
MwoI	GCNNNNNNNGC	2 cut(s)	143, 255
NdeII	GATC	2 cut(s)	232, 266
PkrI	GCNGC	2 cut(s)	243, 251
PleI	GAGTC	1 cut(s)	38
PpsI	GAGTC	1 cut(s)	38
Ppu21I	YACGTR	1 cut(s)	167
Psp6I	CCWGG	1 cut(s)	253
PspFI	CCCAGC	3 cut(s)	71, 137, 191
PspGI	CCWGG	1 cut(s)	253
PsuI	RGATCY	1 cut(s)	266
RsaI	GTAC	1 cut(s)	165
RsaNI	GTAC	1 cut(s)	164
SaqAI	TTAA	1 cut(s)	289
SatI	GCNGC	2 cut(s)	242, 250
Sau3AI	GATC	2 cut(s)	232, 266
SchI	GAGTC	1 cut(s)	39
ScrFI	CCNGG	1 cut(s)	255
SduI	GDGCHC	2 cut(s)	79, 204
SetI	ASST	7 cut(s)	43, 121, 139, 160, 169, 175, 287
SsiI	CCGC	4 cut(s)	47, 241, 250, 262
SspMI	CTAG	1 cut(s)	245
StyD4I	CCNGG	1 cut(s)	253
TaiI	ACGT	2 cut(s)	43, 169
TaqI	TCGA	1 cut(s)	210
TauI	GCSGC	2 cut(s)	244, 252
Tru1I	TTAA	1 cut(s)	289
Tru9I	TTAA	1 cut(s)	289
TspDTI	ATGAA	1 cut(s)	261
TspGWI	ACGGA	1 cut(s)	196
XspI	CTAG	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.