Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0007345

Physical Location & Seq

Genomic Coordinates Reverse (-)

10412421 .. 10414935

Gene Structure 2515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1085200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGACAAATCAAAAGCACTATGGATTCGAATTGGATTGGGTGCTTGGTGCTGTACTTTCCATGGATATTTTGGAGGCGTCGTGTGATTTACAGCGTCTAGGCCGGCCTAGCTCACAGAGATCTTCGTTGATGTGTTTAGGCAGAAATTACAGAGGAGCTTATTTGTTGGAGATTCGAGGAGGAAAACTTAGCACCGTGGCACCACTGGAAGTGGTAATTGCTAATCAGGTGTTGATTTGTGGATGTGCGATTGATCTAAAGGGCCGTTGGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

92

Amino Acids

10.04

Weight (kDa)

8.45

Isoelectric Point (pI)

39.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007345)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74410
fragaria_vesca	FvH4_5g14620 FvH4_5g14620 FvH4_5g14620
malus_domestica	MD06G1196900.v1.1 MD12G1085200.v1.1 MD14G1203800.v1.1
prunus_persica	Prupe.5G197100_v2.0.a1 Prupe.5G197100_v2.0.a1 Prupe.5G197100_v2.0.a1
pyrus_communis	pycom04g11620 pycom14g16860
rosa_chinensis	RchiOBHm_Chr7g0181871
rosa_laevigata	RLG00000005167
rosa_multiflora	Rmu_sc0021327.1_g000006
rosa_roxburghii	Rroxscaffold_3G00271680
rosa_rugosa	Rorug06G0444400 Rorug06G0444500 Rorug06G0444600 Rorug06G0444700
rosa_samantha	Rh7AG046900 Rh7BG046500 Rh7CG047000 Rh7DG046100
rosa_wichuraiana	Rw7G003880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	199
AcyI	GRCGYC	1 cut(s)	77
AfaI	GTAC	1 cut(s)	54
AluBI	AGCT	2 cut(s)	111, 158
AluI	AGCT	2 cut(s)	111, 158
AoxI	GGCC	3 cut(s)	100, 104, 262
AspS9I	GGNCC	1 cut(s)	262
AsuII	TTCGAA	1 cut(s)	27
BanI	GGYRCC	1 cut(s)	199
BceAI	ACGGC	1 cut(s)	249
BfaI	CTAG	2 cut(s)	98, 108
BglII	AGATCT	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	262
BmiI	GGNNCC	1 cut(s)	201
Bpu14I	TTCGAA	1 cut(s)	27
BsaHI	GRCGYC	1 cut(s)	77
BsaJI	CCNNGG	2 cut(s)	60, 195
BsaXI	ACNNNNNCTCC	2 cut(s)	65, 95
Bse118I	RCCGGY	1 cut(s)	102
Bse1I	ACTGG	1 cut(s)	210
BseDI	CCNNGG	2 cut(s)	60, 195
BseGI	GGATG	1 cut(s)	248
BseNI	ACTGG	1 cut(s)	210
BseRI	GAGGAG	2 cut(s)	168, 192
BshFI	GGCC	3 cut(s)	102, 106, 264
BshNI	GGYRCC	1 cut(s)	199
BsiSI	CCGG	1 cut(s)	103
BsnI	GGCC	3 cut(s)	102, 106, 264
Bsp119I	TTCGAA	1 cut(s)	27
Bsp143I	GATC	2 cut(s)	119, 253
Bsp19I	CCATGG	1 cut(s)	60
BspANI	GGCC	3 cut(s)	102, 106, 264
BspLI	GGNNCC	1 cut(s)	201
BspT104I	TTCGAA	1 cut(s)	27
BspT107I	GGYRCC	1 cut(s)	199
BsrFI	RCCGGY	1 cut(s)	102
BsrI	ACTGG	1 cut(s)	210
BssAI	RCCGGY	1 cut(s)	102
BssECI	CCNNGG	2 cut(s)	60, 195
BssMI	GATC	2 cut(s)	119, 253
BssNI	GRCGYC	1 cut(s)	77
BssT1I	CCWWGG	1 cut(s)	60
Bst4CI	ACNGT	1 cut(s)	196
BstACI	GRCGYC	1 cut(s)	77
BstBI	TTCGAA	1 cut(s)	27
BstC8I	GCNNGC	1 cut(s)	104
BstDEI	CTNAG	1 cut(s)	188
BstDSI	CCRYGG	2 cut(s)	60, 195
BstF5I	GGATG	1 cut(s)	248
BstKTI	GATC	2 cut(s)	122, 256
BstMBI	GATC	2 cut(s)	119, 253
BstMWI	GCNNNNNNNGC	1 cut(s)	108
BstX2I	RGATCY	1 cut(s)	119
BstYI	RGATCY	1 cut(s)	119
BsuRI	GGCC	3 cut(s)	102, 106, 264
BtgI	CCRYGG	2 cut(s)	60, 195
BtsCI	GGATG	1 cut(s)	248
BtsIMutI	CAGTG	1 cut(s)	203
Cac8I	GCNNGC	1 cut(s)	104
Cfr10I	RCCGGY	1 cut(s)	102
Cfr13I	GGNCC	1 cut(s)	262
CseI	GACGC	2 cut(s)	66, 83
Csp6I	GTAC	1 cut(s)	53
CviAII	CATG	1 cut(s)	61
CviJI	RGCY	6 cut(s)	102, 106, 111, 158, 264, 272
CviKI_1	RGCY	6 cut(s)	102, 106, 111, 158, 264, 272
CviQI	GTAC	1 cut(s)	53
DdeI	CTNAG	1 cut(s)	188
DpnI	GATC	2 cut(s)	121, 255
DpnII	GATC	2 cut(s)	119, 253
Eco130I	CCWWGG	1 cut(s)	60
EcoT14I	CCWWGG	1 cut(s)	60
ErhI	CCWWGG	1 cut(s)	60
FaeI	CATG	1 cut(s)	64
FaiI	YATR	2 cut(s)	21, 62
FatI	CATG	1 cut(s)	60
FokI	GGATG	1 cut(s)	255
FseI	GGCCGGCC	1 cut(s)	106
FspBI	CTAG	2 cut(s)	98, 108
HaeIII	GGCC	3 cut(s)	102, 106, 264
HapII	CCGG	1 cut(s)	103
HgaI	GACGC	2 cut(s)	66, 83
Hin1I	GRCGYC	1 cut(s)	77
Hin1II	CATG	1 cut(s)	64
HinfI	GANTC	2 cut(s)	24, 172
HpaII	CCGG	1 cut(s)	103
Hpy99I	CGWCG	1 cut(s)	82
HpyCH4III	ACNGT	1 cut(s)	196
HpyF10VI	GCNNNNNNNGC	1 cut(s)	108
HpyF3I	CTNAG	1 cut(s)	188
Hsp92I	GRCGYC	1 cut(s)	77
Hsp92II	CATG	1 cut(s)	64
KroI	GCCGGC	1 cut(s)	102
KroNI	GCCGGC	1 cut(s)	104
Kzo9I	GATC	2 cut(s)	119, 253
LmnI	GCTCC	1 cut(s)	155
LpnPI	CCDG	3 cut(s)	116, 191, 212
MaeI	CTAG	2 cut(s)	98, 108
MalI	GATC	2 cut(s)	121, 255
MboI	GATC	2 cut(s)	119, 253
MboII	GAAGA	1 cut(s)	114
MflI	RGATCY	1 cut(s)	119
MluCI	AATT	3 cut(s)	29, 145, 216
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	4 cut(s)	67, 146, 170, 173
MroNI	GCCGGC	1 cut(s)	102
MspI	CCGG	1 cut(s)	103
MwoI	GCNNNNNNNGC	1 cut(s)	108
NaeI	GCCGGC	1 cut(s)	104
NcoI	CCATGG	1 cut(s)	60
NdeII	GATC	2 cut(s)	119, 253
NgoMIV	GCCGGC	1 cut(s)	102
NlaIII	CATG	1 cut(s)	64
NlaIV	GGNNCC	1 cut(s)	201
NspV	TTCGAA	1 cut(s)	27
PdiI	GCCGGC	1 cut(s)	104
PfeI	GAWTC	2 cut(s)	24, 172
PspN4I	GGNNCC	1 cut(s)	201
PspPI	GGNCC	1 cut(s)	262
PsuI	RGATCY	1 cut(s)	119
RigI	GGCCGGCC	1 cut(s)	106
RsaI	GTAC	1 cut(s)	54
RsaNI	GTAC	1 cut(s)	53
Sau3AI	GATC	2 cut(s)	119, 253
Sau96I	GGNCC	1 cut(s)	262
SetI	ASST	3 cut(s)	113, 160, 231
SfuI	TTCGAA	1 cut(s)	27
Sse9I	AATT	3 cut(s)	29, 145, 216
SspMI	CTAG	2 cut(s)	98, 108
StyI	CCWWGG	1 cut(s)	60
TaaI	ACNGT	1 cut(s)	196
TaqI	TCGA	2 cut(s)	27, 175
TasI	AATT	3 cut(s)	29, 145, 216
TatI	WGTACW	1 cut(s)	52
TfiI	GAWTC	2 cut(s)	24, 172
TscAI	CASTG	1 cut(s)	210
TspRI	CASTG	1 cut(s)	210
XcmI	CCANNNNNNNNNTGG	1 cut(s)	67
XspI	CTAG	2 cut(s)	98, 108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.