Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0007345

Physical Location & Seq

Genomic Coordinates Reverse (-)

29208161 .. 29210468

Gene Structure 2308 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1203800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGAGAGCGGAGAGCTCCAAAGGGTCGGAGTCGTTCAACGCGTTCCGCTCCTCATCGTCAACTTCGTTGCTGGGGCTCTGGTTTTGCTTTTTGCTCTTGCTGGATTTTTTACAGGAGGTATTGCTGGTGCTTTAGCTGGGAAGGCTTCTGATAGTGGTGTTGTCCGTGGAGCTGGATTGGGTGCTGTTGCTGGGGCGGTACTGTCCGTTGAGATTTTAGAGGCGTCGCGCGATTTACTGTGTCTTGGCCGGCCTGGCGCTCGGAGATCTTCATTGATGGCAGAAATTACAGAGGAGCTTATTTGTTGGAGATTCGAGGAGGTAAACTTAGCTACGTCGGAAGTGGTACTTGCCAACCAGGTTACCCTTGCTAATCTTCGCCATGATGTCTATGGAGGAGCTGAAACCAGAGGGCTGTCAAGGAATGTTTTGAACAAACTACCATCTCATGTGGTTTTGAAGGATACCAAGGCAGCTCGGGGTTGCTGCTGTACAATATGTTTGCAGGATGTTGAAGTAGGAGAAATTGCGAGGACGCTGCCCCTGTGTCAGCATACGTTTCACTTGGCGTGCGTGGACAAGTGGCTCAGCAAACACGCTTCGTGCCCTCTATGCCGACGAGATGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

210

Amino Acids

22.19

Weight (kDa)

7.55

Isoelectric Point (pI)

41.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	163 - 206	1.4e-11	Ring finger domain
zf-RING_11	PF17123	164 - 192	8.8e-09	RING-like zinc finger
zf-C3HC4_2	PF13923	164 - 205	7.4e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	166 - 206	2.1e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007345)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74410
fragaria_vesca	FvH4_5g14620 FvH4_5g14620 FvH4_5g14620
malus_domestica	MD06G1196900.v1.1 MD12G1085200.v1.1 MD14G1203800.v1.1
prunus_persica	Prupe.5G197100_v2.0.a1 Prupe.5G197100_v2.0.a1 Prupe.5G197100_v2.0.a1
pyrus_communis	pycom04g11620 pycom14g16860
rosa_chinensis	RchiOBHm_Chr7g0181871
rosa_laevigata	RLG00000005167
rosa_multiflora	Rmu_sc0021327.1_g000006
rosa_roxburghii	Rroxscaffold_3G00271680
rosa_rugosa	Rorug06G0444400 Rorug06G0444500 Rorug06G0444600 Rorug06G0444700
rosa_samantha	Rh7AG046900 Rh7BG046500 Rh7CG047000 Rh7DG046100
rosa_wichuraiana	Rw7G003880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	9, 49
AccII	CGCG	3 cut(s)	42, 229, 231
AciI	CCGC	3 cut(s)	9, 47, 197
AcoI	YGGCCR	1 cut(s)	247
AcyI	GRCGYC	1 cut(s)	224
AfaI	GTAC	3 cut(s)	201, 348, 493
AflIII	ACRYGT	1 cut(s)	40
AgsI	TTSAA	4 cut(s)	38, 433, 460, 515
AjnI	CCWGG	2 cut(s)	253, 357
AluBI	AGCT	7 cut(s)	16, 137, 173, 298, 332, 401, 476
AluI	AGCT	7 cut(s)	16, 137, 173, 298, 332, 401, 476
Alw21I	GWGCWC	1 cut(s)	18
Ama87I	CYCGRG	1 cut(s)	477
AoxI	GGCC	2 cut(s)	247, 251
ApeKI	GCWGC	3 cut(s)	473, 486, 538
AspLEI	GCGC	2 cut(s)	231, 260
AvaI	CYCGRG	1 cut(s)	477
BaeGI	GKGCMC	1 cut(s)	608
BanII	GRGCYC	2 cut(s)	18, 79
Bbv12I	GWGCWC	1 cut(s)	18
BbvI	GCAGC	3 cut(s)	473, 485, 525
BccI	CCATC	2 cut(s)	271, 451
BcgI	CGANNNNNNTGC	2 cut(s)	520, 554
BciT130I	CCWGG	2 cut(s)	255, 359
BciVI	GTATCC	1 cut(s)	457
BfoI	RGCGCY	1 cut(s)	261
BfuI	GTATCC	1 cut(s)	457
BglI	GCCNNNNNGGC	1 cut(s)	255
BglII	AGATCT	1 cut(s)	266
BisI	GCNGC	3 cut(s)	474, 487, 539
BlpI	GCTNAGC	1 cut(s)	587
BlsI	GCNGC	3 cut(s)	475, 488, 540
Bme1390I	CCNGG	2 cut(s)	255, 359
BmeT110I	CYCGRG	1 cut(s)	477
BmrFI	CCNGG	2 cut(s)	255, 359
Bpu1102I	GCTNAGC	1 cut(s)	587
BsaHI	GRCGYC	1 cut(s)	224
BsaJI	CCNNGG	2 cut(s)	166, 468
Bse118I	RCCGGY	1 cut(s)	249
BseBI	CCWGG	2 cut(s)	255, 359
BseDI	CCNNGG	2 cut(s)	166, 468
BseGI	GGATG	1 cut(s)	514
BseMII	CTCAG	1 cut(s)	601
BseRI	GAGGAG	4 cut(s)	41, 308, 332, 411
BseSI	GKGCMC	1 cut(s)	608
BseXI	GCAGC	3 cut(s)	473, 485, 525
BseYI	CCCAGC	3 cut(s)	71, 137, 191
Bsh1236I	CGCG	3 cut(s)	42, 229, 231
BshFI	GGCC	2 cut(s)	249, 253
BsiHKAI	GWGCWC	1 cut(s)	18
BsiHKCI	CYCGRG	1 cut(s)	477
BsiSI	CCGG	1 cut(s)	250
BsnI	GGCC	2 cut(s)	249, 253
BsoBI	CYCGRG	1 cut(s)	477
Bsp1286I	GDGCHC	3 cut(s)	18, 79, 608
Bsp1407I	TGTACA	1 cut(s)	491
Bsp143I	GATC	1 cut(s)	266
Bsp1720I	GCTNAGC	1 cut(s)	587
BspACI	CCGC	3 cut(s)	9, 47, 197
BspANI	GGCC	2 cut(s)	249, 253
BspCNI	CTCAG	1 cut(s)	600
BspFNI	CGCG	3 cut(s)	42, 229, 231
BsrBI	CCGCTC	2 cut(s)	9, 49
BsrFI	RCCGGY	1 cut(s)	249
BsrGI	TGTACA	1 cut(s)	491
BssAI	RCCGGY	1 cut(s)	249
BssECI	CCNNGG	2 cut(s)	166, 468
BssMI	GATC	1 cut(s)	266
BssNI	GRCGYC	1 cut(s)	224
BssT1I	CCWWGG	1 cut(s)	468
Bst2UI	CCWGG	2 cut(s)	255, 359
Bst4CI	ACNGT	2 cut(s)	204, 240
BstACI	GRCGYC	1 cut(s)	224
BstAUI	TGTACA	1 cut(s)	491
BstC8I	GCNNGC	2 cut(s)	251, 571
BstDEI	CTNAG	2 cut(s)	328, 587
BstDSI	CCRYGG	1 cut(s)	166
BstEII	GGTNACC	1 cut(s)	361
BstF5I	GGATG	1 cut(s)	514
BstFNI	CGCG	3 cut(s)	42, 229, 231
BstH2I	RGCGCY	1 cut(s)	261
BstHHI	GCGC	2 cut(s)	231, 260
BstKTI	GATC	1 cut(s)	269
BstMBI	GATC	1 cut(s)	266
BstMWI	GCNNNNNNNGC	3 cut(s)	143, 255, 612
BstNI	CCWGG	2 cut(s)	255, 359
BstPI	GGTNACC	1 cut(s)	361
BstSCI	CCNGG	2 cut(s)	253, 357
BstSLI	GKGCMC	1 cut(s)	608
BstUI	CGCG	3 cut(s)	42, 229, 231
BstV1I	GCAGC	3 cut(s)	473, 485, 525
BstX2I	RGATCY	1 cut(s)	266
BstYI	RGATCY	1 cut(s)	266
BsuI	GTATCC	1 cut(s)	457
BsuRI	GGCC	2 cut(s)	249, 253
BtgI	CCRYGG	1 cut(s)	166
BtsCI	GGATG	1 cut(s)	514
Cac8I	GCNNGC	2 cut(s)	251, 571
CfoI	GCGC	2 cut(s)	231, 260
Cfr10I	RCCGGY	1 cut(s)	249
CseI	GACGC	2 cut(s)	213, 544
CsiI	ACCWGGT	1 cut(s)	357
Csp6I	GTAC	3 cut(s)	200, 347, 492
CviAII	CATG	2 cut(s)	383, 449
CviQI	GTAC	3 cut(s)	200, 347, 492
DdeI	CTNAG	2 cut(s)	328, 587
DpnI	GATC	1 cut(s)	268
DpnII	GATC	1 cut(s)	266
EaeI	YGGCCR	1 cut(s)	247
Ecl136II	GAGCTC	1 cut(s)	16
Eco130I	CCWWGG	1 cut(s)	468
Eco24I	GRGCYC	2 cut(s)	18, 79
Eco53kI	GAGCTC	1 cut(s)	16
Eco88I	CYCGRG	1 cut(s)	477
Eco91I	GGTNACC	1 cut(s)	361
EcoICRI	GAGCTC	1 cut(s)	16
EcoO65I	GGTNACC	1 cut(s)	361
EcoRII	CCWGG	2 cut(s)	253, 357
EcoT14I	CCWWGG	1 cut(s)	468
EcoT38I	GRGCYC	2 cut(s)	18, 79
ErhI	CCWWGG	1 cut(s)	468
FaeI	CATG	2 cut(s)	386, 452
FaiI	YATR	6 cut(s)	384, 393, 450, 499, 555, 613
FalI	AAGNNNNNCTT	2 cut(s)	333, 365
FatI	CATG	2 cut(s)	382, 448
Fnu4HI	GCNGC	3 cut(s)	474, 487, 539
FokI	GGATG	1 cut(s)	521
FriOI	GRGCYC	2 cut(s)	18, 79
FseI	GGCCGGCC	1 cut(s)	253
Fsp4HI	GCNGC	3 cut(s)	474, 487, 539
GlaI	GCGC	2 cut(s)	230, 259
GluI	GCNGC	3 cut(s)	474, 487, 539
GsaI	CCCAGC	3 cut(s)	75, 141, 195
HaeII	RGCGCY	1 cut(s)	261
HaeIII	GGCC	2 cut(s)	249, 253
HapII	CCGG	1 cut(s)	250
HgaI	GACGC	2 cut(s)	213, 544
HhaI	GCGC	2 cut(s)	231, 260
Hin1I	GRCGYC	1 cut(s)	224
Hin1II	CATG	2 cut(s)	386, 452
Hin6I	GCGC	2 cut(s)	229, 258
HinP1I	GCGC	2 cut(s)	229, 258
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HinfI	GANTC	2 cut(s)	30, 312
HpaII	CCGG	1 cut(s)	250
Hpy166II	GTNNAC	3 cut(s)	61, 325, 577
Hpy188I	TCNGA	4 cut(s)	29, 151, 264, 340
Hpy8I	GTNNAC	3 cut(s)	61, 325, 577
Hpy99I	CGWCG	3 cut(s)	229, 340, 621
HpyAV	CCTTC	2 cut(s)	136, 454
HpyCH4III	ACNGT	2 cut(s)	204, 240
HpyCH4IV	ACGT	2 cut(s)	335, 557
HpyCH4V	TGCA	1 cut(s)	505
HpyF10VI	GCNNNNNNNGC	3 cut(s)	143, 255, 612
HpyF3I	CTNAG	2 cut(s)	328, 587
HpySE526I	ACGT	2 cut(s)	335, 557
Hsp92I	GRCGYC	1 cut(s)	224
Hsp92II	CATG	2 cut(s)	386, 452
HspAI	GCGC	2 cut(s)	229, 258
KroI	GCCGGC	1 cut(s)	249
KroNI	GCCGGC	1 cut(s)	251
Kzo9I	GATC	1 cut(s)	266
LmnI	GCTCC	5 cut(s)	21, 54, 170, 295, 398
Lsp1109I	GCAGC	3 cut(s)	473, 485, 525
MabI	ACCWGGT	1 cut(s)	357
MaeII	ACGT	2 cut(s)	335, 557
MaeIII	GTNAC	1 cut(s)	361
MalI	GATC	1 cut(s)	268
MbiI	CCGCTC	2 cut(s)	9, 49
MboI	GATC	1 cut(s)	266
MboII	GAAGA	2 cut(s)	261, 368
MflI	RGATCY	1 cut(s)	266
MhlI	GDGCHC	3 cut(s)	18, 79, 608
MluCI	AATT	2 cut(s)	285, 525
MluI	ACGCGT	1 cut(s)	40
MlyI	GAGTC	1 cut(s)	39
MmeI	TCCRAC	3 cut(s)	7, 287, 318
MroNI	GCCGGC	1 cut(s)	249
MspI	CCGG	1 cut(s)	250
MspR9I	CCNGG	2 cut(s)	255, 359
MvaI	CCWGG	2 cut(s)	255, 359
MvnI	CGCG	3 cut(s)	42, 229, 231
MwoI	GCNNNNNNNGC	3 cut(s)	143, 255, 612
NaeI	GCCGGC	1 cut(s)	251
NdeII	GATC	1 cut(s)	266
NgoMIV	GCCGGC	1 cut(s)	249
NlaIII	CATG	2 cut(s)	386, 452
PcsI	WCGNNNNNNNCGW	2 cut(s)	39, 63
PdiI	GCCGGC	1 cut(s)	251
PfeI	GAWTC	1 cut(s)	312
PkrI	GCNGC	3 cut(s)	475, 488, 540
PleI	GAGTC	1 cut(s)	38
PpsI	GAGTC	1 cut(s)	38
Psp124BI	GAGCTC	1 cut(s)	18
Psp6I	CCWGG	2 cut(s)	253, 357
PspEI	GGTNACC	1 cut(s)	361
PspFI	CCCAGC	3 cut(s)	71, 137, 191
PspGI	CCWGG	2 cut(s)	253, 357
PsuI	RGATCY	1 cut(s)	266
RigI	GGCCGGCC	1 cut(s)	253
RsaI	GTAC	3 cut(s)	201, 348, 493
RsaNI	GTAC	3 cut(s)	200, 347, 492
SacI	GAGCTC	1 cut(s)	18
SatI	GCNGC	3 cut(s)	474, 487, 539
Sau3AI	GATC	1 cut(s)	266
SchI	GAGTC	1 cut(s)	39
ScrFI	CCNGG	2 cut(s)	255, 359
SduI	GDGCHC	3 cut(s)	18, 79, 608
SexAI	ACCWGGT	1 cut(s)	357
Sse9I	AATT	2 cut(s)	285, 525
SsiI	CCGC	3 cut(s)	9, 47, 197
SstI	GAGCTC	1 cut(s)	18
StyD4I	CCNGG	2 cut(s)	253, 357
StyI	CCWWGG	1 cut(s)	468
TaaI	ACNGT	2 cut(s)	204, 240
TaiI	ACGT	2 cut(s)	338, 560
TaqI	TCGA	1 cut(s)	315
TasI	AATT	2 cut(s)	285, 525
TatI	WGTACW	1 cut(s)	491
TfiI	GAWTC	1 cut(s)	312
TseI	GCWGC	3 cut(s)	473, 486, 538
TspDTI	ATGAA	1 cut(s)	261
TspGWI	ACGGA	2 cut(s)	155, 196
XcmI	CCANNNNNNNNNTGG	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.