Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0007345

Physical Location & Seq

Genomic Coordinates Reverse (-)

3546031 .. 3548568

Gene Structure 2538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG046100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGAGAGCGGAGAGATTCAGAGGGTTGGAATCCTTCAACGCCTCCCACTGCTTGTGATCAACTTCGTTGCTGGGACTCTGGTTCTGCTTTTTGCCCTTGCGGGATTTTTCGCAGGAGGCATTTTTGGTGCTTTAGCCGGTAAGGCTTCTGACAGTGGTATTATTCGTGGAGCAGGATTGGGTGCTGTTGCTGGGGCTGTTCTCTCTGTGGAGATTTTGGAAGCTTCACGTGAGTTATTGCGTCTTGGTCGGCCTGGCTCACGAAGATCTTCATTGATGGCAGAAATTACAGAGGAGCTTATTTGTTGGAGGTTTGAGGAGGAAAACTTACCACCGCCAGAAGTGCTAAGTGCTAGCCATTGGCAGCAGGTTAACTTCACTAATCTTAACCTTGATGAGATTCGTGATGGAGTAGTTGAAACCAGAGGGTTGTCAAGGGATTTGTTCAAGAAATTGCCATATCATGAGATTCTGGGGGATACCAAGGCAGCTCGGGTTTCCTGTTGTACAATATGTTTGCAGGTTATTACTCTTTCAGAGAAGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

182

Amino Acids

19.69

Weight (kDa)

5.49

Isoelectric Point (pI)

47.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007345)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74410
fragaria_vesca	FvH4_5g14620 FvH4_5g14620 FvH4_5g14620
malus_domestica	MD06G1196900.v1.1 MD12G1085200.v1.1 MD14G1203800.v1.1
prunus_persica	Prupe.5G197100_v2.0.a1 Prupe.5G197100_v2.0.a1 Prupe.5G197100_v2.0.a1
pyrus_communis	pycom04g11620 pycom14g16860
rosa_chinensis	RchiOBHm_Chr7g0181871
rosa_laevigata	RLG00000005167
rosa_multiflora	Rmu_sc0021327.1_g000006
rosa_roxburghii	Rroxscaffold_3G00271680
rosa_rugosa	Rorug06G0444400 Rorug06G0444500 Rorug06G0444600 Rorug06G0444700
rosa_samantha	Rh7AG046900 Rh7BG046500 Rh7CG047000 Rh7DG046100
rosa_wichuraiana	Rw7G003880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	358, 511
AccBSI	CCGCTC	1 cut(s)	9
AciI	CCGC	3 cut(s)	9, 101, 335
AcvI	CACGTG	1 cut(s)	230
AfaI	GTAC	1 cut(s)	508
AgsI	TTSAA	3 cut(s)	38, 419, 448
AjnI	CCWGG	1 cut(s)	253
AluBI	AGCT	3 cut(s)	224, 298, 491
AluI	AGCT	3 cut(s)	224, 298, 491
Ama87I	CYCGRG	1 cut(s)	492
AoxI	GGCC	1 cut(s)	251
ApeKI	GCWGC	2 cut(s)	364, 488
Asp700I	GAANNNNTTC	1 cut(s)	268
AsuNHI	GCTAGC	1 cut(s)	353
AvaI	CYCGRG	1 cut(s)	492
BbrPI	CACGTG	1 cut(s)	230
BbvI	GCAGC	2 cut(s)	376, 500
BccI	CCATC	2 cut(s)	271, 401
BciT130I	CCWGG	1 cut(s)	255
BciVI	GTATCC	1 cut(s)	472
BclI	TGATCA	1 cut(s)	57
BfaI	CTAG	1 cut(s)	354
BfuAI	ACCTGC	2 cut(s)	358, 511
BfuI	GTATCC	1 cut(s)	472
BglI	GCCNNNNNGGC	1 cut(s)	143
BglII	AGATCT	1 cut(s)	266
BisI	GCNGC	2 cut(s)	365, 489
BlsI	GCNGC	2 cut(s)	366, 490
Bme1390I	CCNGG	1 cut(s)	255
BmeT110I	CYCGRG	1 cut(s)	492
BmrFI	CCNGG	1 cut(s)	255
BmtI	GCTAGC	1 cut(s)	357
BsaAI	YACGTR	1 cut(s)	230
BsaJI	CCNNGG	1 cut(s)	483
Bse118I	RCCGGY	1 cut(s)	137
BseBI	CCWGG	1 cut(s)	255
BseDI	CCNNGG	1 cut(s)	483
BseRI	GAGGAG	2 cut(s)	308, 332
BseXI	GCAGC	2 cut(s)	376, 500
BseYI	CCCAGC	2 cut(s)	71, 191
BshFI	GGCC	1 cut(s)	253
BsiHKCI	CYCGRG	1 cut(s)	492
BsiSI	CCGG	1 cut(s)	138
BslFI	GGGAC	1 cut(s)	88
BsmFI	GGGAC	1 cut(s)	88
BsnI	GGCC	1 cut(s)	253
BsoBI	CYCGRG	1 cut(s)	492
Bsp1407I	TGTACA	1 cut(s)	506
Bsp143I	GATC	2 cut(s)	57, 266
BspACI	CCGC	3 cut(s)	9, 101, 335
BspANI	GGCC	1 cut(s)	253
BspHI	TCATGA	1 cut(s)	463
BspMI	ACCTGC	2 cut(s)	358, 511
BspOI	GCTAGC	1 cut(s)	357
BsrBI	CCGCTC	1 cut(s)	9
BsrFI	RCCGGY	1 cut(s)	137
BsrGI	TGTACA	1 cut(s)	506
BssAI	RCCGGY	1 cut(s)	137
BssECI	CCNNGG	1 cut(s)	483
BssMI	GATC	2 cut(s)	57, 266
BssT1I	CCWWGG	1 cut(s)	483
Bst2UI	CCWGG	1 cut(s)	255
Bst4CI	ACNGT	1 cut(s)	155
BstAUI	TGTACA	1 cut(s)	506
BstBAI	YACGTR	1 cut(s)	230
BstC8I	GCNNGC	1 cut(s)	355
BstDEI	CTNAG	1 cut(s)	347
BstKTI	GATC	2 cut(s)	60, 269
BstMBI	GATC	2 cut(s)	57, 266
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 343
BstNI	CCWGG	1 cut(s)	255
BstSCI	CCNGG	1 cut(s)	253
BstV1I	GCAGC	2 cut(s)	376, 500
BstX2I	RGATCY	1 cut(s)	266
BstYI	RGATCY	1 cut(s)	266
BsuI	GTATCC	1 cut(s)	472
BsuRI	GGCC	1 cut(s)	253
BtsI	GCAGTG	1 cut(s)	47
BtsIMutI	CAGTG	2 cut(s)	47, 160
BveI	ACCTGC	2 cut(s)	358, 511
Cac8I	GCNNGC	1 cut(s)	355
CciI	TCATGA	1 cut(s)	463
Cfr10I	RCCGGY	1 cut(s)	137
CseI	GACGC	1 cut(s)	230
Csp6I	GTAC	1 cut(s)	507
CviAII	CATG	1 cut(s)	464
CviJI	RGCY	9 cut(s)	137, 146, 197, 224, 253, 258, 298, 357, 491
CviKI_1	RGCY	9 cut(s)	137, 146, 197, 224, 253, 258, 298, 357, 491
CviQI	GTAC	1 cut(s)	507
DdeI	CTNAG	1 cut(s)	347
DpnI	GATC	2 cut(s)	59, 268
DpnII	GATC	2 cut(s)	57, 266
Eco130I	CCWWGG	1 cut(s)	483
Eco72I	CACGTG	1 cut(s)	230
Eco88I	CYCGRG	1 cut(s)	492
EcoRII	CCWGG	1 cut(s)	253
EcoT14I	CCWWGG	1 cut(s)	483
ErhI	CCWWGG	1 cut(s)	483
FaeI	CATG	1 cut(s)	467
FaiI	YATR	3 cut(s)	460, 465, 514
FaqI	GGGAC	1 cut(s)	88
FatI	CATG	1 cut(s)	463
FauI	CCCGC	1 cut(s)	94
FbaI	TGATCA	1 cut(s)	57
Fnu4HI	GCNGC	2 cut(s)	365, 489
Fsp4HI	GCNGC	2 cut(s)	365, 489
FspBI	CTAG	1 cut(s)	354
GluI	GCNGC	2 cut(s)	365, 489
GsaI	CCCAGC	2 cut(s)	75, 195
HaeIII	GGCC	1 cut(s)	253
HapII	CCGG	1 cut(s)	138
HgaI	GACGC	1 cut(s)	230
Hin1II	CATG	1 cut(s)	467
HincII	GTYRAC	1 cut(s)	373
HindII	GTYRAC	1 cut(s)	373
HindIII	AAGCTT	1 cut(s)	222
HinfI	GANTC	5 cut(s)	16, 30, 76, 400, 469
HpaI	GTTAAC	1 cut(s)	373
HpaII	CCGG	1 cut(s)	138
Hpy166II	GTNNAC	1 cut(s)	373
Hpy188I	TCNGA	3 cut(s)	21, 151, 538
Hpy188III	TCNNGA	5 cut(s)	261, 404, 448, 464, 546
Hpy8I	GTNNAC	1 cut(s)	373
HpyAV	CCTTC	1 cut(s)	44
HpyCH4III	ACNGT	1 cut(s)	155
HpyCH4IV	ACGT	1 cut(s)	229
HpyCH4V	TGCA	1 cut(s)	520
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 343
HpyF3I	CTNAG	1 cut(s)	347
HpySE526I	ACGT	1 cut(s)	229
Hsp92II	CATG	1 cut(s)	467
Ksp22I	TGATCA	1 cut(s)	57
KspAI	GTTAAC	1 cut(s)	373
Kzo9I	GATC	2 cut(s)	57, 266
LmnI	GCTCC	2 cut(s)	170, 295
Lsp1109I	GCAGC	2 cut(s)	376, 500
MaeI	CTAG	1 cut(s)	354
MaeII	ACGT	1 cut(s)	229
MalI	GATC	2 cut(s)	59, 268
MbiI	CCGCTC	1 cut(s)	9
MboI	GATC	2 cut(s)	57, 266
MboII	GAAGA	2 cut(s)	261, 276
MflI	RGATCY	1 cut(s)	266
MluCI	AATT	2 cut(s)	285, 452
MlyI	GAGTC	1 cut(s)	70
MmeI	TCCRAC	2 cut(s)	7, 287
MnlI	CCTC	8 cut(s)	15, 53, 110, 286, 303, 310, 313, 419
MroXI	GAANNNNTTC	1 cut(s)	268
MseI	TTAA	2 cut(s)	372, 387
MspI	CCGG	1 cut(s)	138
MspR9I	CCNGG	1 cut(s)	255
MvaI	CCWGG	1 cut(s)	255
MwoI	GCNNNNNNNGC	2 cut(s)	143, 343
NdeII	GATC	2 cut(s)	57, 266
NheI	GCTAGC	1 cut(s)	353
NlaIII	CATG	1 cut(s)	467
PagI	TCATGA	1 cut(s)	463
PdmI	GAANNNNTTC	1 cut(s)	268
PfeI	GAWTC	4 cut(s)	16, 30, 400, 469
PkrI	GCNGC	2 cut(s)	366, 490
PleI	GAGTC	1 cut(s)	70
PmaCI	CACGTG	1 cut(s)	230
PmlI	CACGTG	1 cut(s)	230
PpsI	GAGTC	1 cut(s)	70
Ppu21I	YACGTR	1 cut(s)	230
Psp6I	CCWGG	1 cut(s)	253
PspCI	CACGTG	1 cut(s)	230
PspFI	CCCAGC	2 cut(s)	71, 191
PspGI	CCWGG	1 cut(s)	253
PsuI	RGATCY	1 cut(s)	266
RsaI	GTAC	1 cut(s)	508
RsaNI	GTAC	1 cut(s)	507
SaqAI	TTAA	2 cut(s)	372, 387
SatI	GCNGC	2 cut(s)	365, 489
Sau3AI	GATC	2 cut(s)	57, 266
SchI	GAGTC	1 cut(s)	70
ScrFI	CCNGG	1 cut(s)	255
SetI	ASST	8 cut(s)	226, 232, 300, 314, 372, 393, 493, 525
Sse9I	AATT	2 cut(s)	285, 452
SsiI	CCGC	3 cut(s)	9, 101, 335
SspMI	CTAG	1 cut(s)	354
StyD4I	CCNGG	1 cut(s)	253
StyI	CCWWGG	1 cut(s)	483
TaaI	ACNGT	1 cut(s)	155
TaiI	ACGT	1 cut(s)	232
TasI	AATT	2 cut(s)	285, 452
TatI	WGTACW	1 cut(s)	506
TfiI	GAWTC	4 cut(s)	16, 30, 400, 469
Tru1I	TTAA	2 cut(s)	372, 387
Tru9I	TTAA	2 cut(s)	372, 387
TscAI	CASTG	2 cut(s)	54, 160
TseI	GCWGC	2 cut(s)	364, 488
TspDTI	ATGAA	1 cut(s)	261
TspRI	CASTG	2 cut(s)	54, 160
XmnI	GAANNNNTTC	1 cut(s)	268
XspI	CTAG	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.