Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0007345

Physical Location & Seq

Genomic Coordinates Reverse (-)

15949370 .. 15951992

Gene Structure 2623 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G197100.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGAGACCGCTGAGCTACAAAGGGTTGGAGTCGTTCAACGTGTTCCTCTGCTTATCATTAACTTCGTTGCTGGAGCTCTGGTTTTGCTCTGTGCTCTTGCTGGATTTTTCACTGGAGGTATTGCTGGTGCTTTAGCTGGAAAAGCTTCTGATAAAGGTGTTGTTCGTGGAGCTGGACTGGGTGCTGTTGCTGGGGCTGTACTCTCTGTAGAGATTTTGGAGGCGTCACGTGATTTACTGCGACTAGGTCGGCCTGGTTCACGAAGATCTTCATTGATGGCAGAAATTACAGAGGAGCTTATTTGTTGGAGATTTGAGGAGGAAAACTTAGCACCACCAGAAGGGCACACTGCTAACCAGTGGCAGGTTACCTTCGCTAATCTTCGCCGTGATGAGATTTATGATGCCTTTGGAGGATCTGAAACTAAAGGGCTGTCAAGGGATGTGCTGAAGAAACTACCATCTCATGTGATTGTGGGGGATACCAGGGCAGCTCAAGGTTTCTGTTGTACGATATGTTTGCAGGATGTTGAAGTAGGAGAAATTGCAAGGACCCTGCCCCTGTGTCAGCATAAATTTCACCTGGCATGTGTGGACAAGTGGCTCATCAGACATGCTTCGTGCCCATTATGCAGACAAAATGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

216

Amino Acids

23.19

Weight (kDa)

6.94

Isoelectric Point (pI)

47.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007345)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74410
fragaria_vesca	FvH4_5g14620 FvH4_5g14620 FvH4_5g14620
malus_domestica	MD06G1196900.v1.1 MD12G1085200.v1.1 MD14G1203800.v1.1
prunus_persica	Prupe.5G197100_v2.0.a1 Prupe.5G197100_v2.0.a1 Prupe.5G197100_v2.0.a1
pyrus_communis	pycom04g11620 pycom14g16860
rosa_chinensis	RchiOBHm_Chr7g0181871
rosa_laevigata	RLG00000005167
rosa_multiflora	Rmu_sc0021327.1_g000006
rosa_roxburghii	Rroxscaffold_3G00271680
rosa_rugosa	Rorug06G0444400 Rorug06G0444500 Rorug06G0444600 Rorug06G0444700
rosa_samantha	Rh7AG046900 Rh7BG046500 Rh7CG047000 Rh7DG046100
rosa_wichuraiana	Rw7G003880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	355
AciI	CCGC	1 cut(s)	9
AclWI	GGATC	1 cut(s)	424
AcsI	RAATTY	1 cut(s)	575
AcuI	CTGAAG	1 cut(s)	470
AcvI	CACGTG	1 cut(s)	230
AcyI	GRCGYC	1 cut(s)	224
AfaI	GTAC	2 cut(s)	201, 511
AfiI	CCNNNNNNNGG	2 cut(s)	341, 364
AflIII	ACRYGT	1 cut(s)	40
AgsI	TTSAA	2 cut(s)	38, 533
AjnI	CCWGG	3 cut(s)	253, 485, 582
AluBI	AGCT	7 cut(s)	16, 77, 137, 146, 173, 298, 494
AluI	AGCT	7 cut(s)	16, 77, 137, 146, 173, 298, 494
Alw21I	GWGCWC	2 cut(s)	79, 97
AlwI	GGATC	1 cut(s)	424
AoxI	GGCC	1 cut(s)	251
ApeKI	GCWGC	1 cut(s)	491
ApoI	RAATTY	1 cut(s)	575
Asp700I	GAANNNNTTC	2 cut(s)	145, 268
AspS9I	GGNCC	1 cut(s)	552
AsuHPI	GGTGA	1 cut(s)	572
AvaII	GGWCC	1 cut(s)	552
BaeGI	GKGCMC	2 cut(s)	348, 626
BanII	GRGCYC	1 cut(s)	79
BbrPI	CACGTG	1 cut(s)	230
Bbv12I	GWGCWC	2 cut(s)	79, 97
BbvI	GCAGC	1 cut(s)	503
BccI	CCATC	2 cut(s)	271, 469
BceAI	ACGGC	1 cut(s)	372
BcgI	CGANNNNNNTGC	2 cut(s)	502, 536
BciT130I	CCWGG	3 cut(s)	255, 487, 584
BciVI	GTATCC	1 cut(s)	475
BfaI	CTAG	1 cut(s)	245
BfmI	CTRYAG	1 cut(s)	207
BfuAI	ACCTGC	1 cut(s)	355
BfuI	GTATCC	1 cut(s)	475
BglII	AGATCT	1 cut(s)	266
BisI	GCNGC	1 cut(s)	492
BlpI	GCTNAGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	493
Bme1390I	CCNGG	3 cut(s)	255, 487, 584
Bme18I	GGWCC	1 cut(s)	552
BmgT120I	GGNCC	1 cut(s)	552
BmiI	GGNNCC	1 cut(s)	554
BmrFI	CCNGG	3 cut(s)	255, 487, 584
BmrI	ACTGGG	1 cut(s)	188
BmsI	GCATC	1 cut(s)	394
BmuI	ACTGGG	1 cut(s)	188
BpmI	CTGGAG	2 cut(s)	93, 135
Bpu1102I	GCTNAGC	1 cut(s)	12
BpuEI	CTTGAG	1 cut(s)	480
BsaAI	YACGTR	1 cut(s)	230
BsaHI	GRCGYC	1 cut(s)	224
BsaJI	CCNNGG	1 cut(s)	486
BsaXI	ACNNNNNCTCC	2 cut(s)	66, 96
Bsc4I	CCNNNNNNNGG	2 cut(s)	341, 364
Bse1I	ACTGG	3 cut(s)	118, 183, 358
BseBI	CCWGG	3 cut(s)	255, 487, 584
BseDI	CCNNGG	1 cut(s)	486
BseGI	GGATG	2 cut(s)	448, 532
BseLI	CCNNNNNNNGG	2 cut(s)	341, 364
BseNI	ACTGG	3 cut(s)	118, 183, 358
BseRI	GAGGAG	2 cut(s)	308, 332
BseSI	GKGCMC	2 cut(s)	348, 626
BseXI	GCAGC	1 cut(s)	503
BseYI	CCCAGC	1 cut(s)	191
BshFI	GGCC	1 cut(s)	253
BsiHKAI	GWGCWC	2 cut(s)	79, 97
BslI	CCNNNNNNNGG	2 cut(s)	341, 364
BsnI	GGCC	1 cut(s)	253
Bsp1286I	GDGCHC	4 cut(s)	79, 97, 348, 626
Bsp143I	GATC	2 cut(s)	266, 416
Bsp1720I	GCTNAGC	1 cut(s)	12
BspACI	CCGC	1 cut(s)	9
BspANI	GGCC	1 cut(s)	253
BspCNI	CTCAG	1 cut(s)	4
BspLI	GGNNCC	1 cut(s)	554
BspMI	ACCTGC	1 cut(s)	355
BspPI	GGATC	1 cut(s)	424
BsrI	ACTGG	3 cut(s)	118, 183, 358
BssECI	CCNNGG	1 cut(s)	486
BssMI	GATC	2 cut(s)	266, 416
BssNI	GRCGYC	1 cut(s)	224
Bst2UI	CCWGG	3 cut(s)	255, 487, 584
BstACI	GRCGYC	1 cut(s)	224
BstBAI	YACGTR	1 cut(s)	230
BstDEI	CTNAG	2 cut(s)	12, 328
BstEII	GGTNACC	1 cut(s)	367
BstF5I	GGATG	2 cut(s)	448, 532
BstKTI	GATC	2 cut(s)	269, 419
BstMBI	GATC	2 cut(s)	266, 416
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 630
BstNI	CCWGG	3 cut(s)	255, 487, 584
BstNSI	RCATGY	2 cut(s)	591, 617
BstPI	GGTNACC	1 cut(s)	367
BstSCI	CCNGG	3 cut(s)	253, 485, 582
BstSFI	CTRYAG	1 cut(s)	207
BstSLI	GKGCMC	2 cut(s)	348, 626
BstV1I	GCAGC	1 cut(s)	503
BstX2I	RGATCY	2 cut(s)	266, 416
BstYI	RGATCY	2 cut(s)	266, 416
BsuI	GTATCC	1 cut(s)	475
BsuRI	GGCC	1 cut(s)	253
BtsCI	GGATG	2 cut(s)	448, 532
BtsI	GCAGTG	1 cut(s)	348
BtsIMutI	CAGTG	3 cut(s)	111, 348, 365
BveI	ACCTGC	1 cut(s)	355
Cfr13I	GGNCC	1 cut(s)	552
CseI	GACGC	1 cut(s)	213
Csp6I	GTAC	2 cut(s)	200, 510
CviAII	CATG	3 cut(s)	467, 588, 614
CviQI	GTAC	2 cut(s)	200, 510
DdeI	CTNAG	2 cut(s)	12, 328
DpnI	GATC	2 cut(s)	268, 418
DpnII	GATC	2 cut(s)	266, 416
Ecl136II	GAGCTC	1 cut(s)	77
Eco24I	GRGCYC	1 cut(s)	79
Eco47I	GGWCC	1 cut(s)	552
Eco53kI	GAGCTC	1 cut(s)	77
Eco57I	CTGAAG	1 cut(s)	470
Eco72I	CACGTG	1 cut(s)	230
Eco91I	GGTNACC	1 cut(s)	367
EcoICRI	GAGCTC	1 cut(s)	77
EcoO109I	RGGNCCY	1 cut(s)	552
EcoO65I	GGTNACC	1 cut(s)	367
EcoRII	CCWGG	3 cut(s)	253, 485, 582
EcoT38I	GRGCYC	1 cut(s)	79
FaeI	CATG	3 cut(s)	470, 591, 617
FaiI	YATR	7 cut(s)	402, 468, 517, 573, 589, 615, 631
FatI	CATG	3 cut(s)	466, 587, 613
Fnu4HI	GCNGC	1 cut(s)	492
FokI	GGATG	2 cut(s)	455, 539
FriOI	GRGCYC	1 cut(s)	79
Fsp4HI	GCNGC	1 cut(s)	492
FspBI	CTAG	1 cut(s)	245
GluI	GCNGC	1 cut(s)	492
GsaI	CCCAGC	1 cut(s)	195
GsuI	CTGGAG	2 cut(s)	93, 135
HaeIII	GGCC	1 cut(s)	253
HgaI	GACGC	1 cut(s)	213
Hin1I	GRCGYC	1 cut(s)	224
Hin1II	CATG	3 cut(s)	470, 591, 617
HindIII	AAGCTT	1 cut(s)	144
HinfI	GANTC	1 cut(s)	30
HphI	GGTGA	1 cut(s)	572
Hpy166II	GTNNAC	2 cut(s)	260, 595
Hpy188I	TCNGA	3 cut(s)	151, 421, 611
Hpy188III	TCNNGA	1 cut(s)	261
Hpy8I	GTNNAC	2 cut(s)	260, 595
HpyAV	CCTTC	2 cut(s)	335, 382
HpyCH4IV	ACGT	2 cut(s)	40, 229
HpyCH4V	TGCA	3 cut(s)	523, 548, 633
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 630
HpyF3I	CTNAG	2 cut(s)	12, 328
HpySE526I	ACGT	2 cut(s)	40, 229
Hsp92I	GRCGYC	1 cut(s)	224
Hsp92II	CATG	3 cut(s)	470, 591, 617
Kzo9I	GATC	2 cut(s)	266, 416
LmnI	GCTCC	3 cut(s)	74, 170, 295
Lsp1109I	GCAGC	1 cut(s)	503
LweI	GCATC	1 cut(s)	394
MaeI	CTAG	1 cut(s)	245
MaeII	ACGT	2 cut(s)	40, 229
MaeIII	GTNAC	2 cut(s)	225, 367
MalI	GATC	2 cut(s)	268, 418
MboI	GATC	2 cut(s)	266, 416
MboII	GAAGA	4 cut(s)	261, 276, 374, 463
MflI	RGATCY	2 cut(s)	266, 416
MhlI	GDGCHC	4 cut(s)	79, 97, 348, 626
MluCI	AATT	3 cut(s)	285, 543, 575
MlyI	GAGTC	1 cut(s)	39
MmeI	TCCRAC	2 cut(s)	7, 287
MnlI	CCTC	7 cut(s)	57, 110, 214, 286, 310, 313, 407
MroXI	GAANNNNTTC	2 cut(s)	145, 268
MseI	TTAA	1 cut(s)	60
MspA1I	CMGCKG	1 cut(s)	11
MspR9I	CCNGG	3 cut(s)	255, 487, 584
MvaI	CCWGG	3 cut(s)	255, 487, 584
MwoI	GCNNNNNNNGC	2 cut(s)	143, 630
NdeII	GATC	2 cut(s)	266, 416
NlaIII	CATG	3 cut(s)	470, 591, 617
NlaIV	GGNNCC	1 cut(s)	554
NmuCI	GTSAC	1 cut(s)	225
NspI	RCATGY	2 cut(s)	591, 617
PdmI	GAANNNNTTC	2 cut(s)	145, 268
PflFI	GACNNNGTC	1 cut(s)	246
PkrI	GCNGC	1 cut(s)	493
PleI	GAGTC	1 cut(s)	38
PmaCI	CACGTG	1 cut(s)	230
PmlI	CACGTG	1 cut(s)	230
PpsI	GAGTC	1 cut(s)	38
Ppu21I	YACGTR	1 cut(s)	230
PpuMI	RGGWCCY	1 cut(s)	552
Psp124BI	GAGCTC	1 cut(s)	79
Psp5II	RGGWCCY	1 cut(s)	552
Psp6I	CCWGG	3 cut(s)	253, 485, 582
PspCI	CACGTG	1 cut(s)	230
PspEI	GGTNACC	1 cut(s)	367
PspFI	CCCAGC	1 cut(s)	191
PspGI	CCWGG	3 cut(s)	253, 485, 582
PspN4I	GGNNCC	1 cut(s)	554
PspPI	GGNCC	1 cut(s)	552
PspPPI	RGGWCCY	1 cut(s)	552
PsuI	RGATCY	2 cut(s)	266, 416
PsyI	GACNNNGTC	1 cut(s)	246
RsaI	GTAC	2 cut(s)	201, 511
RsaNI	GTAC	2 cut(s)	200, 510
SacI	GAGCTC	1 cut(s)	79
SaqAI	TTAA	1 cut(s)	60
SatI	GCNGC	1 cut(s)	492
Sau3AI	GATC	2 cut(s)	266, 416
Sau96I	GGNCC	1 cut(s)	552
SchI	GAGTC	1 cut(s)	39
ScrFI	CCNGG	3 cut(s)	255, 487, 584
SduI	GDGCHC	4 cut(s)	79, 97, 348, 626
SfaNI	GCATC	1 cut(s)	394
SfcI	CTRYAG	1 cut(s)	207
SinI	GGWCC	1 cut(s)	552
SmlI	CTYRAG	1 cut(s)	495
SmoI	CTYRAG	1 cut(s)	495
Sse9I	AATT	3 cut(s)	285, 543, 575
SsiI	CCGC	1 cut(s)	9
SspMI	CTAG	1 cut(s)	245
SstI	GAGCTC	1 cut(s)	79
StyD4I	CCNGG	3 cut(s)	253, 485, 582
TaiI	ACGT	2 cut(s)	43, 232
TasI	AATT	3 cut(s)	285, 543, 575
TatI	WGTACW	1 cut(s)	199
Tru1I	TTAA	1 cut(s)	60
Tru9I	TTAA	1 cut(s)	60
TscAI	CASTG	3 cut(s)	118, 355, 365
TseFI	GTSAC	1 cut(s)	225
TseI	GCWGC	1 cut(s)	491
Tsp45I	GTSAC	1 cut(s)	225
TspDTI	ATGAA	1 cut(s)	261
TspRI	CASTG	3 cut(s)	118, 355, 365
Tth111I	GACNNNGTC	1 cut(s)	246
VpaK11BI	GGWCC	1 cut(s)	552
XapI	RAATTY	1 cut(s)	575
XceI	RCATGY	2 cut(s)	591, 617
XmnI	GAANNNNTTC	2 cut(s)	145, 268
XspI	CTAG	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.