Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007345

Physical Location & Seq

Genomic Coordinates Forward (+)

57605721 .. 57607124

Gene Structure 1404 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0444700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGATTTCGAAGATGAACAATACCTGAAGCAAAGACTAGACGAGTTGCAGAGAGACGTCTCCAAGAAGCAGAAGTTCGAACCCGCCGTCGCCGCTCTCGTCTCTCTCCTCCGCGACCGCTACTCCTCCGCCTCCCCGCCGCTTCGCAAGTCCTACTACACCGTCATCTCCCGCGTCGCCACCGTCTTGAAGACCCGCTACACCTCCCCCGGTTTCTGGGCCGCCGGGTTGGCCCTCTTCCGCCTCGCCCTAACCCTAGTTTCCGACCCGGCCGAGAAGAATCAATTACTCAATTACATTTCCGAGGCCGAGAAGGTCGTTCGCCAAGAAGACGAGCCTCCCAATCTCTCGCCGCCGAATCAAGGGTTTCTTTTCGAGGGGCATCTGACGGTGGATCGGGAGCCGCCGCAACCGCAGTGGCTGGTCCAGTCGAATCTCATGGCCTCCGCCGCCACTCTCTTCGCCTCCGAGTCTTCGCGTTCGGGTCGACCCGAACCCGAGAGCGCGGCGAATCTGCTGCAGTCGCTAATCGACGACCTTGACAGCGTTTTGCCGCCTGGGATTTTGGACGACGTGAGAGGAGCGCCGAGGGTGCCGCCGGCGAGTAAGAAAGTGGTGGCGAATCTTCCGGTGATTACGATTACGGAGGAGAAGCTGGGAGAGGAAGCAGACTGCTGCATTTGTAAAGAGGTTTTGGTTGTGAATGACAAGATGCAGGAATTGCCTTGCAAGCACACTTTTCACCCACCATGTTTGAAACCTTGGCTGGATGAGCACAATTCGTGTCCAATATGCCGGCATGAGTTGGAGACTGATGATCATGAATATGAGAGCTGGAAGGAGAGGGAGAGGGAGGCTGAAGAAGACAGAAAAGGCGCTGCCAATGCGGTTCGGGGTGGTGAATACATGTATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

305

Amino Acids

34.37

Weight (kDa)

5.01

Isoelectric Point (pI)

54.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	224 - 266	3.7e-12	Ring finger domain
zf-RING_11	PF17123	224 - 252	1.9e-06	RING-like zinc finger
zf-C3HC4_2	PF13923	225 - 265	5.3e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007345)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74410
fragaria_vesca	FvH4_5g14620 FvH4_5g14620 FvH4_5g14620
malus_domestica	MD06G1196900.v1.1 MD12G1085200.v1.1 MD14G1203800.v1.1
prunus_persica	Prupe.5G197100_v2.0.a1 Prupe.5G197100_v2.0.a1 Prupe.5G197100_v2.0.a1
pyrus_communis	pycom04g11620 pycom14g16860
rosa_chinensis	RchiOBHm_Chr7g0181871
rosa_laevigata	RLG00000005167
rosa_multiflora	Rmu_sc0021327.1_g000006
rosa_roxburghii	Rroxscaffold_3G00271680
rosa_rugosa	Rorug06G0444400 Rorug06G0444500 Rorug06G0444600 Rorug06G0444700
rosa_samantha	Rh7AG046900 Rh7BG046500 Rh7CG047000 Rh7DG046100
rosa_wichuraiana	Rw7G003880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	60
AccB1I	GGYRCC	1 cut(s)	592
AccBSI	CCGCTC	1 cut(s)	95
AccI	GTMKAC	1 cut(s)	487
AccII	CGCG	4 cut(s)	114, 174, 478, 506
AclWI	GGATC	1 cut(s)	402
AcoI	YGGCCR	1 cut(s)	270
AcuI	CTGAAG	2 cut(s)	47, 879
AcyI	GRCGYC	1 cut(s)	57
AfiI	CCNNNNNNNGG	2 cut(s)	216, 362
AflIII	ACRYGT	1 cut(s)	906
AgsI	TTSAA	2 cut(s)	190, 757
AjiI	CACGTC	1 cut(s)	574
AjnI	CCWGG	1 cut(s)	556
AluBI	AGCT	2 cut(s)	655, 834
AluI	AGCT	2 cut(s)	655, 834
Alw21I	GWGCWC	1 cut(s)	777
Alw26I	GTCTC	4 cut(s)	48, 64, 106, 803
AlwI	GGATC	1 cut(s)	402
AlwNI	CAGNNNCTG	1 cut(s)	421
Ama87I	CYCGRG	1 cut(s)	497
AoxI	GGCC	5 cut(s)	219, 231, 270, 306, 441
ApeKI	GCWGC	3 cut(s)	517, 675, 878
ArsI	GACNNNNNNTTYG	2 cut(s)	72, 104
AspLEI	GCGC	3 cut(s)	506, 586, 878
AspS9I	GGNCC	3 cut(s)	219, 232, 424
AsuC2I	CCSGG	3 cut(s)	210, 226, 269
AsuHPI	GGTGA	3 cut(s)	643, 734, 911
AsuII	TTCGAA	2 cut(s)	9, 78
AvaI	CYCGRG	1 cut(s)	497
AvaII	GGWCC	1 cut(s)	424
BanI	GGYRCC	1 cut(s)	592
BarI	GAAGNNNNNNTAC	2 cut(s)	182, 214
BbsI	GAAGAC	4 cut(s)	197, 336, 465, 870
Bbv12I	GWGCWC	1 cut(s)	777
BbvI	GCAGC	3 cut(s)	504, 662, 865
BceAI	ACGGC	1 cut(s)	71
BcgI	CGANNNNNNTGC	2 cut(s)	499, 533
BciT130I	CCWGG	1 cut(s)	558
BclI	TGATCA	1 cut(s)	817
BcnI	CCSGG	3 cut(s)	210, 226, 269
BcoDI	GTCTC	4 cut(s)	48, 64, 106, 803
BfaI	CTAG	2 cut(s)	38, 257
BfmI	CTRYAG	1 cut(s)	518
BfoI	RGCGCY	2 cut(s)	587, 879
BglI	GCCNNNNNGGC	1 cut(s)	230
Bme1390I	CCNGG	4 cut(s)	210, 226, 269, 558
Bme18I	GGWCC	1 cut(s)	424
BmeT110I	CYCGRG	1 cut(s)	497
BmgBI	CACGTC	1 cut(s)	574
BmgT120I	GGNCC	3 cut(s)	219, 232, 424
BmiI	GGNNCC	2 cut(s)	402, 594
BmrFI	CCNGG	4 cut(s)	210, 226, 269, 558
BmsI	GCATC	2 cut(s)	391, 702
BpiI	GAAGAC	4 cut(s)	197, 336, 465, 870
Bpu14I	TTCGAA	2 cut(s)	9, 78
BpuMI	CCSGG	3 cut(s)	210, 226, 269
BsaHI	GRCGYC	1 cut(s)	57
BsaJI	CCNNGG	5 cut(s)	208, 303, 557, 587, 761
BsaWI	WCCGGW	1 cut(s)	628
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	2 cut(s)	216, 362
Bse118I	RCCGGY	2 cut(s)	598, 795
Bse1I	ACTGG	1 cut(s)	427
BseBI	CCWGG	1 cut(s)	558
BseDI	CCNNGG	5 cut(s)	208, 303, 557, 587, 761
BseGI	GGATG	1 cut(s)	775
BseLI	CCNNNNNNNGG	2 cut(s)	216, 362
BseNI	ACTGG	1 cut(s)	427
BseRI	GAGGAG	4 cut(s)	98, 115, 594, 662
BseX3I	CGGCCG	1 cut(s)	270
BseXI	GCAGC	3 cut(s)	504, 662, 865
BseYI	CCCAGC	1 cut(s)	655
Bsh1236I	CGCG	4 cut(s)	114, 174, 478, 506
Bsh1285I	CGRYCG	2 cut(s)	118, 273
BshFI	GGCC	5 cut(s)	221, 233, 272, 308, 443
BshNI	GGYRCC	1 cut(s)	592
BsiEI	CGRYCG	2 cut(s)	118, 273
BsiHKAI	GWGCWC	1 cut(s)	777
BsiHKCI	CYCGRG	1 cut(s)	497
BsiSI	CCGG	6 cut(s)	210, 225, 269, 599, 629, 796
BslI	CCNNNNNNNGG	2 cut(s)	216, 362
BsmAI	GTCTC	4 cut(s)	48, 64, 106, 803
BsmBI	CGTCTC	3 cut(s)	48, 64, 106
BsnI	GGCC	5 cut(s)	221, 233, 272, 308, 443
BsoBI	CYCGRG	1 cut(s)	497
Bsp119I	TTCGAA	2 cut(s)	9, 78
Bsp1286I	GDGCHC	1 cut(s)	777
Bsp143I	GATC	2 cut(s)	394, 817
BspANI	GGCC	5 cut(s)	221, 233, 272, 308, 443
BspFNI	CGCG	4 cut(s)	114, 174, 478, 506
BspHI	TCATGA	1 cut(s)	820
BspLI	GGNNCC	2 cut(s)	402, 594
BspMAI	CTGCAG	1 cut(s)	522
BspPI	GGATC	1 cut(s)	402
BspT104I	TTCGAA	2 cut(s)	9, 78
BspT107I	GGYRCC	1 cut(s)	592
BsrBI	CCGCTC	1 cut(s)	95
BsrFI	RCCGGY	2 cut(s)	598, 795
BsrI	ACTGG	1 cut(s)	427
BssAI	RCCGGY	2 cut(s)	598, 795
BssECI	CCNNGG	5 cut(s)	208, 303, 557, 587, 761
BssMI	GATC	2 cut(s)	394, 817
BssNI	GRCGYC	1 cut(s)	57
BssT1I	CCWWGG	1 cut(s)	761
Bst2UI	CCWGG	1 cut(s)	558
Bst4CI	ACNGT	3 cut(s)	163, 184, 391
Bst6I	CTCTTC	2 cut(s)	242, 464
BstACI	GRCGYC	1 cut(s)	57
BstAPI	GCANNNNNTGC	1 cut(s)	721
BstBI	TTCGAA	2 cut(s)	9, 78
BstC8I	GCNNGC	3 cut(s)	600, 731, 797
BstF5I	GGATG	1 cut(s)	775
BstFNI	CGCG	4 cut(s)	114, 174, 478, 506
BstH2I	RGCGCY	2 cut(s)	587, 879
BstHHI	GCGC	3 cut(s)	506, 586, 878
BstKTI	GATC	2 cut(s)	397, 820
BstMAI	GTCTC	4 cut(s)	48, 64, 106, 803
BstMBI	GATC	2 cut(s)	394, 817
BstMCI	CGRYCG	2 cut(s)	118, 273
BstNI	CCWGG	1 cut(s)	558
BstNSI	RCATGY	1 cut(s)	910
BstSCI	CCNGG	4 cut(s)	208, 224, 267, 556
BstSFI	CTRYAG	1 cut(s)	518
BstUI	CGCG	4 cut(s)	114, 174, 478, 506
BstV1I	GCAGC	3 cut(s)	504, 662, 865
BstV2I	GAAGAC	4 cut(s)	197, 336, 465, 870
BstZI	CGGCCG	1 cut(s)	270
BsuRI	GGCC	5 cut(s)	221, 233, 272, 308, 443
BtrI	CACGTC	1 cut(s)	574
BtsCI	GGATG	1 cut(s)	775
BtsI	GCAGTG	1 cut(s)	422
BtsIMutI	CAGTG	1 cut(s)	422
Cac8I	GCNNGC	3 cut(s)	600, 731, 797
CaiI	CAGNNNCTG	1 cut(s)	421
CciI	TCATGA	1 cut(s)	820
CfoI	GCGC	3 cut(s)	506, 586, 878
Cfr10I	RCCGGY	2 cut(s)	598, 795
Cfr13I	GGNCC	3 cut(s)	219, 232, 424
CseI	GACGC	1 cut(s)	163
CspCI	CAANNNNNGTGG	4 cut(s)	398, 433, 735, 770
CviAII	CATG	5 cut(s)	439, 750, 800, 821, 907
DpnI	GATC	2 cut(s)	396, 819
DpnII	GATC	2 cut(s)	394, 817
EaeI	YGGCCR	1 cut(s)	270
EagI	CGGCCG	1 cut(s)	270
Eam1104I	CTCTTC	2 cut(s)	242, 464
EarI	CTCTTC	2 cut(s)	242, 464
EciI	GGCGGA	3 cut(s)	118, 230, 436
EclXI	CGGCCG	1 cut(s)	270
Eco130I	CCWWGG	1 cut(s)	761
Eco47I	GGWCC	1 cut(s)	424
Eco52I	CGGCCG	1 cut(s)	270
Eco57I	CTGAAG	2 cut(s)	47, 879
Eco88I	CYCGRG	1 cut(s)	497
EcoRII	CCWGG	1 cut(s)	556
EcoT14I	CCWWGG	1 cut(s)	761
ErhI	CCWWGG	1 cut(s)	761
Esp3I	CGTCTC	3 cut(s)	48, 64, 106
FaeI	CATG	5 cut(s)	442, 753, 803, 824, 910
FaiI	YATR	8 cut(s)	440, 751, 793, 801, 822, 828, 908, 912
FalI	AAGNNNNNCTT	2 cut(s)	354, 386
FatI	CATG	5 cut(s)	438, 749, 799, 820, 906
FauI	CCCGC	4 cut(s)	91, 144, 179, 203
FbaI	TGATCA	1 cut(s)	817
FblI	GTMKAC	1 cut(s)	487
FokI	GGATG	1 cut(s)	782
FspBI	CTAG	2 cut(s)	38, 257
GlaI	GCGC	3 cut(s)	505, 585, 877
GsaI	CCCAGC	1 cut(s)	659
HaeII	RGCGCY	2 cut(s)	587, 879
HaeIII	GGCC	5 cut(s)	221, 233, 272, 308, 443
HapII	CCGG	6 cut(s)	210, 225, 269, 599, 629, 796
HgaI	GACGC	1 cut(s)	163
HhaI	GCGC	3 cut(s)	506, 586, 878
Hin1I	GRCGYC	1 cut(s)	57
Hin1II	CATG	5 cut(s)	442, 753, 803, 824, 910
Hin6I	GCGC	3 cut(s)	504, 584, 876
HinP1I	GCGC	3 cut(s)	504, 584, 876
HincII	GTYRAC	1 cut(s)	488
HindII	GTYRAC	1 cut(s)	488
HinfI	GANTC	6 cut(s)	280, 358, 433, 470, 511, 622
HpaII	CCGG	6 cut(s)	210, 225, 269, 599, 629, 796
HphI	GGTGA	3 cut(s)	643, 734, 911
Hpy166II	GTNNAC	1 cut(s)	488
Hpy188I	TCNGA	4 cut(s)	265, 304, 387, 469
Hpy188III	TCNNGA	3 cut(s)	187, 398, 821
Hpy8I	GTNNAC	1 cut(s)	488
Hpy99I	CGWCG	4 cut(s)	92, 179, 536, 575
HpyAV	CCTTC	2 cut(s)	307, 832
HpyCH4III	ACNGT	3 cut(s)	163, 184, 391
HpyCH4IV	ACGT	2 cut(s)	57, 573
HpyCH4V	TGCA	5 cut(s)	49, 520, 678, 715, 729
HpySE526I	ACGT	2 cut(s)	57, 573
Hsp92I	GRCGYC	1 cut(s)	57
Hsp92II	CATG	5 cut(s)	442, 753, 803, 824, 910
HspAI	GCGC	3 cut(s)	504, 584, 876
KroI	GCCGGC	2 cut(s)	598, 795
KroNI	GCCGGC	2 cut(s)	600, 797
Ksp22I	TGATCA	1 cut(s)	817
Kzo9I	GATC	2 cut(s)	394, 817
LmnI	GCTCC	2 cut(s)	400, 581
Lsp1109I	GCAGC	3 cut(s)	504, 662, 865
LweI	GCATC	2 cut(s)	391, 702
MaeI	CTAG	2 cut(s)	38, 257
MaeII	ACGT	2 cut(s)	57, 573
MalI	GATC	2 cut(s)	396, 819
MbiI	CCGCTC	1 cut(s)	95
MboI	GATC	2 cut(s)	394, 817
MhlI	GDGCHC	1 cut(s)	777
MluCI	AATT	4 cut(s)	284, 292, 719, 778
MlyI	GAGTC	1 cut(s)	479
MmeI	TCCRAC	2 cut(s)	288, 786
MreI	CGCCGGCG	1 cut(s)	598
MroNI	GCCGGC	2 cut(s)	598, 795
MseI	TTAA	1 cut(s)	916
MslI	CAYNNNNRTG	1 cut(s)	825
MspI	CCGG	6 cut(s)	210, 225, 269, 599, 629, 796
MspR9I	CCNGG	4 cut(s)	210, 226, 269, 558
MvaI	CCWGG	1 cut(s)	558
MvnI	CGCG	4 cut(s)	114, 174, 478, 506
NaeI	GCCGGC	2 cut(s)	600, 797
NciI	CCSGG	3 cut(s)	210, 226, 269
NdeII	GATC	2 cut(s)	394, 817
NgoMIV	GCCGGC	2 cut(s)	598, 795
NlaIII	CATG	5 cut(s)	442, 753, 803, 824, 910
NlaIV	GGNNCC	2 cut(s)	402, 594
NmeAIII	GCCGAG	3 cut(s)	298, 334, 612
NspI	RCATGY	1 cut(s)	910
NspV	TTCGAA	2 cut(s)	9, 78
PagI	TCATGA	1 cut(s)	820
PciI	ACATGT	1 cut(s)	906
PcsI	WCGNNNNNNNCGW	2 cut(s)	84, 96
PdiI	GCCGGC	2 cut(s)	600, 797
PfeI	GAWTC	5 cut(s)	280, 358, 433, 511, 622
PleI	GAGTC	1 cut(s)	478
PpsI	GAGTC	1 cut(s)	478
PscI	ACATGT	1 cut(s)	906
Psp6I	CCWGG	1 cut(s)	556
PspFI	CCCAGC	1 cut(s)	655
PspGI	CCWGG	1 cut(s)	556
PspN4I	GGNNCC	2 cut(s)	402, 594
PspPI	GGNCC	3 cut(s)	219, 232, 424
PstI	CTGCAG	1 cut(s)	522
PstNI	CAGNNNCTG	1 cut(s)	421
RseI	CAYNNNNRTG	1 cut(s)	825
SalI	GTCGAC	1 cut(s)	486
SaqAI	TTAA	1 cut(s)	916
Sau3AI	GATC	2 cut(s)	394, 817
Sau96I	GGNCC	3 cut(s)	219, 232, 424
SchI	GAGTC	1 cut(s)	479
ScrFI	CCNGG	4 cut(s)	210, 226, 269, 558
SduI	GDGCHC	1 cut(s)	777
SfaNI	GCATC	2 cut(s)	391, 702
SfcI	CTRYAG	1 cut(s)	518
SfuI	TTCGAA	2 cut(s)	9, 78
SgrAI	CRCCGGYG	1 cut(s)	598
SinI	GGWCC	1 cut(s)	424
SmiMI	CAYNNNNRTG	1 cut(s)	825
Sse9I	AATT	4 cut(s)	284, 292, 719, 778
SspMI	CTAG	2 cut(s)	38, 257
StyD4I	CCNGG	4 cut(s)	208, 224, 267, 556
StyI	CCWWGG	1 cut(s)	761
TaaI	ACNGT	3 cut(s)	163, 184, 391
TaiI	ACGT	2 cut(s)	60, 576
TaqI	TCGA	6 cut(s)	9, 78, 375, 431, 487, 531
TasI	AATT	4 cut(s)	284, 292, 719, 778
TfiI	GAWTC	5 cut(s)	280, 358, 433, 511, 622
Tru1I	TTAA	1 cut(s)	916
Tru9I	TTAA	1 cut(s)	916
TscAI	CASTG	1 cut(s)	422
TseI	GCWGC	3 cut(s)	517, 675, 878
TspDTI	ATGAA	2 cut(s)	30, 837
TspGWI	ACGGA	1 cut(s)	659
TspRI	CASTG	1 cut(s)	422
VpaK11BI	GGWCC	1 cut(s)	424
XceI	RCATGY	1 cut(s)	910
XmiI	GTMKAC	1 cut(s)	487
XspI	CTAG	2 cut(s)	38, 257
ZraI	GACGTC	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.