Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007345

Physical Location & Seq

Genomic Coordinates Reverse (-)

57603402 .. 57605246

Gene Structure 1845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0444600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGCGTGTTCAGACCGGCAAGAAGAAAAGGGTAGAAAAAATGGGTTCGATTGATAGGATCAGTGCATTGCCTGATGAACTAGTTCGTCACATACTTGCCCACATTAGATTCTGTGAGGACCTCCGTTTTGTAACAACTTGTGGACCTCGGTTCCCAATCTGGACTTGTACGACCGAAGAGATTTTCCTGCTGATGATGATGTTCGGCTTCGTCGCCCTCGTTGTGATCGTTTTGCAAGGTTACAATTTCAATGTTTCTGTGCCTCAAGTGAAGACGCTGAACATAAGTCTTCAACTGGGGATGGCAAGGCCAAGAAGAGGTCATGAGTATGAACAGTTTGAGACTCGTATCAATGTTTATATCGATGCCCCAAAGCTTGAAAAACTTGATCTCAAAAAGGATGGTTTCACAAATTATGTTCTCATGGGGAGAGCCAAGTCCCTAGTTAATGCCAGTATTGATGTCAGAGATTCTAGAGCCAAAAATCCACCTCACTTTCCCTCTTGTGCAACTGCGCTTCTGGTTGGAATTTCTAATGTGAAATATCTGTCTCTTTTGGCTCCTTGGTCAAAGGTAACTGAATGTGTGAGACAATATCCAAAGTGTGAATGGGATCTACCAAAGGATGTGCCTATTTGCTTGTTGTCACACCTGAAGACTATCTCCATAAGTGGATTCAAGGGACAGTGGGCTGAGAGGGAGATAGCCAAGTATCTCTTGAAGAATGGTTCTTTTTTGGATAAGATGCTGATTTACACAGACGGTGTGTATGCGGTACGAGACTTTCACAAGGAGTTTTCAATGTTCCATAGGATGGTTAAGTTCATTCAGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

278

Amino Acids

32.06

Weight (kDa)

9.45

Isoelectric Point (pI)

33.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBD	PF08387	207 - 251	1.5e-12	FBD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007345)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74410
fragaria_vesca	FvH4_5g14620 FvH4_5g14620 FvH4_5g14620
malus_domestica	MD06G1196900.v1.1 MD12G1085200.v1.1 MD14G1203800.v1.1
prunus_persica	Prupe.5G197100_v2.0.a1 Prupe.5G197100_v2.0.a1 Prupe.5G197100_v2.0.a1
pyrus_communis	pycom04g11620 pycom14g16860
rosa_chinensis	RchiOBHm_Chr7g0181871
rosa_laevigata	RLG00000005167
rosa_multiflora	Rmu_sc0021327.1_g000006
rosa_roxburghii	Rroxscaffold_3G00271680
rosa_rugosa	Rorug06G0444400 Rorug06G0444500 Rorug06G0444600 Rorug06G0444700
rosa_samantha	Rh7AG046900 Rh7BG046500 Rh7CG047000 Rh7DG046100
rosa_wichuraiana	Rw7G003880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	814
AciI	CCGC	1 cut(s)	773
AclWI	GGATC	2 cut(s)	65, 621
AcsI	RAATTY	1 cut(s)	528
AcuI	CTGAAG	1 cut(s)	674
AfaI	GTAC	2 cut(s)	169, 777
AfiI	CCNNNNNNNGG	2 cut(s)	317, 814
AgsI	TTSAA	6 cut(s)	250, 293, 380, 679, 721, 801
AhlI	ACTAGT	1 cut(s)	79
AluBI	AGCT	1 cut(s)	376
AluI	AGCT	1 cut(s)	376
Alw26I	GTCTC	4 cut(s)	335, 555, 583, 774
AlwI	GGATC	2 cut(s)	65, 621
AoxI	GGCC	1 cut(s)	308
ApoI	RAATTY	1 cut(s)	528
ArsI	GACNNNNNNTTYG	2 cut(s)	110, 142
Asp700I	GAANNNNTTC	1 cut(s)	81
AspLEI	GCGC	1 cut(s)	517
AspS9I	GGNCC	2 cut(s)	118, 143
AvaII	GGWCC	2 cut(s)	118, 143
BbsI	GAAGAC	3 cut(s)	278, 281, 662
BccI	CCATC	3 cut(s)	295, 395, 808
BcoDI	GTCTC	4 cut(s)	335, 555, 583, 774
BcuI	ACTAGT	1 cut(s)	79
BfaI	CTAG	3 cut(s)	80, 443, 474
Bme18I	GGWCC	2 cut(s)	118, 143
BmgT120I	GGNCC	2 cut(s)	118, 143
BmiI	GGNNCC	2 cut(s)	152, 561
BmrI	ACTGGG	1 cut(s)	305
BmsI	GCATC	2 cut(s)	355, 735
BmuI	ACTGGG	1 cut(s)	305
BpiI	GAAGAC	3 cut(s)	278, 281, 662
BpuEI	CTTGAG	1 cut(s)	249
Bsa29I	ATCGAT	1 cut(s)	363
BsaJI	CCNNGG	2 cut(s)	146, 563
Bsc4I	CCNNNNNNNGG	2 cut(s)	317, 814
Bse118I	RCCGGY	1 cut(s)	14
Bse1I	ACTGG	2 cut(s)	300, 453
Bse3DI	GCAATG	1 cut(s)	65
BseCI	ATCGAT	1 cut(s)	363
BseDI	CCNNGG	2 cut(s)	146, 563
BseGI	GGATG	4 cut(s)	306, 406, 631, 819
BseLI	CCNNNNNNNGG	2 cut(s)	317, 814
BseMI	GCAATG	1 cut(s)	65
BseMII	CTCAG	1 cut(s)	684
BseNI	ACTGG	2 cut(s)	300, 453
Bsh1285I	CGRYCG	1 cut(s)	174
BshFI	GGCC	1 cut(s)	310
BshVI	ATCGAT	1 cut(s)	363
BsiEI	CGRYCG	1 cut(s)	174
BsiSI	CCGG	1 cut(s)	15
BslFI	GGGAC	2 cut(s)	424, 696
BslI	CCNNNNNNNGG	2 cut(s)	317, 814
BsmAI	GTCTC	4 cut(s)	335, 555, 583, 774
BsmFI	GGGAC	2 cut(s)	424, 696
BsnI	GGCC	1 cut(s)	310
Bsp143I	GATC	4 cut(s)	57, 225, 388, 613
BspACI	CCGC	1 cut(s)	773
BspANI	GGCC	1 cut(s)	310
BspCNI	CTCAG	1 cut(s)	685
BspDI	ATCGAT	1 cut(s)	363
BspHI	TCATGA	1 cut(s)	322
BspLI	GGNNCC	2 cut(s)	152, 561
BspPI	GGATC	2 cut(s)	65, 621
BsrDI	GCAATG	1 cut(s)	65
BsrFI	RCCGGY	1 cut(s)	14
BsrI	ACTGG	2 cut(s)	300, 453
BssAI	RCCGGY	1 cut(s)	14
BssECI	CCNNGG	2 cut(s)	146, 563
BssMI	GATC	4 cut(s)	57, 225, 388, 613
BssT1I	CCWWGG	1 cut(s)	563
Bst4CI	ACNGT	3 cut(s)	336, 687, 764
Bst6I	CTCTTC	2 cut(s)	171, 310
BstDEI	CTNAG	1 cut(s)	693
BstF5I	GGATG	4 cut(s)	306, 406, 631, 819
BstHHI	GCGC	1 cut(s)	517
BstKTI	GATC	4 cut(s)	60, 228, 391, 616
BstMAI	GTCTC	4 cut(s)	335, 555, 583, 774
BstMBI	GATC	4 cut(s)	57, 225, 388, 613
BstMCI	CGRYCG	1 cut(s)	174
BstV2I	GAAGAC	3 cut(s)	278, 281, 662
BstX2I	RGATCY	1 cut(s)	613
BstYI	RGATCY	1 cut(s)	613
Bsu15I	ATCGAT	1 cut(s)	363
BsuRI	GGCC	1 cut(s)	310
BsuTUI	ATCGAT	1 cut(s)	363
BtsCI	GGATG	4 cut(s)	306, 406, 631, 819
BtsIMutI	CAGTG	2 cut(s)	67, 692
CciI	TCATGA	1 cut(s)	322
CfoI	GCGC	1 cut(s)	517
Cfr10I	RCCGGY	1 cut(s)	14
Cfr13I	GGNCC	2 cut(s)	118, 143
ClaI	ATCGAT	1 cut(s)	363
CseI	GACGC	1 cut(s)	283
Csp6I	GTAC	2 cut(s)	168, 776
CviAII	CATG	2 cut(s)	323, 424
CviJI	RGCY	8 cut(s)	207, 310, 376, 434, 479, 560, 692, 707
CviKI_1	RGCY	8 cut(s)	207, 310, 376, 434, 479, 560, 692, 707
CviQI	GTAC	2 cut(s)	168, 776
DdeI	CTNAG	1 cut(s)	693
DpnI	GATC	4 cut(s)	59, 227, 390, 615
DpnII	GATC	4 cut(s)	57, 225, 388, 613
Eam1104I	CTCTTC	2 cut(s)	171, 310
EarI	CTCTTC	2 cut(s)	171, 310
Eco130I	CCWWGG	1 cut(s)	563
Eco47I	GGWCC	2 cut(s)	118, 143
Eco57I	CTGAAG	1 cut(s)	674
EcoO109I	RGGNCCY	1 cut(s)	118
EcoT14I	CCWWGG	1 cut(s)	563
ErhI	CCWWGG	1 cut(s)	563
FaeI	CATG	2 cut(s)	326, 427
FalI	AAGNNNNNCTT	2 cut(s)	701, 733
FaqI	GGGAC	2 cut(s)	424, 696
FatI	CATG	2 cut(s)	322, 423
FokI	GGATG	4 cut(s)	313, 413, 638, 826
FspBI	CTAG	3 cut(s)	80, 443, 474
GlaI	GCGC	1 cut(s)	516
HaeIII	GGCC	1 cut(s)	310
HapII	CCGG	1 cut(s)	15
HgaI	GACGC	1 cut(s)	283
HhaI	GCGC	1 cut(s)	517
Hin1II	CATG	2 cut(s)	326, 427
Hin6I	GCGC	1 cut(s)	515
HinP1I	GCGC	1 cut(s)	515
HindIII	AAGCTT	1 cut(s)	374
HinfI	GANTC	4 cut(s)	108, 343, 470, 675
HpaII	CCGG	1 cut(s)	15
Hpy166II	GTNNAC	1 cut(s)	143
Hpy188I	TCNGA	3 cut(s)	12, 467, 831
Hpy188III	TCNNGA	4 cut(s)	160, 323, 474, 718
Hpy8I	GTNNAC	1 cut(s)	143
Hpy99I	CGWCG	1 cut(s)	215
HpyCH4III	ACNGT	3 cut(s)	336, 687, 764
HpyCH4V	TGCA	3 cut(s)	65, 235, 509
HpyF3I	CTNAG	1 cut(s)	693
Hsp92II	CATG	2 cut(s)	326, 427
HspAI	GCGC	1 cut(s)	515
Kzo9I	GATC	4 cut(s)	57, 225, 388, 613
LmnI	GCTCC	1 cut(s)	565
LpnPI	CCDG	8 cut(s)	28, 84, 145, 200, 281, 466, 506, 665
LweI	GCATC	2 cut(s)	355, 735
MaeI	CTAG	3 cut(s)	80, 443, 474
MaeIII	GTNAC	5 cut(s)	86, 130, 239, 574, 645
MalI	GATC	4 cut(s)	59, 227, 390, 615
MboI	GATC	4 cut(s)	57, 225, 388, 613
MboII	GAAGA	7 cut(s)	34, 188, 281, 283, 327, 667, 733
MflI	RGATCY	1 cut(s)	613
MluCI	AATT	3 cut(s)	244, 412, 528
MlyI	GAGTC	1 cut(s)	337
MmeI	TCCRAC	1 cut(s)	505
MnlI	CCTC	9 cut(s)	109, 131, 156, 227, 273, 311, 501, 511, 690
MroXI	GAANNNNTTC	1 cut(s)	81
MseI	TTAA	2 cut(s)	447, 819
MslI	CAYNNNNRTG	2 cut(s)	327, 830
MspI	CCGG	1 cut(s)	15
NdeII	GATC	4 cut(s)	57, 225, 388, 613
NlaIII	CATG	2 cut(s)	326, 427
NlaIV	GGNNCC	2 cut(s)	152, 561
NmuCI	GTSAC	2 cut(s)	86, 645
PagI	TCATGA	1 cut(s)	322
PcsI	WCGNNNNNNNCGW	2 cut(s)	216, 225
PdmI	GAANNNNTTC	1 cut(s)	81
PfeI	GAWTC	3 cut(s)	108, 470, 675
PflMI	CCANNNNNTGG	1 cut(s)	814
PleI	GAGTC	1 cut(s)	337
PpsI	GAGTC	1 cut(s)	337
PpuMI	RGGWCCY	1 cut(s)	118
Psp5II	RGGWCCY	1 cut(s)	118
PspN4I	GGNNCC	2 cut(s)	152, 561
PspPI	GGNCC	2 cut(s)	118, 143
PspPPI	RGGWCCY	1 cut(s)	118
PsuI	RGATCY	1 cut(s)	613
RsaI	GTAC	2 cut(s)	169, 777
RsaNI	GTAC	2 cut(s)	168, 776
RseI	CAYNNNNRTG	2 cut(s)	327, 830
SaqAI	TTAA	2 cut(s)	447, 819
Sau3AI	GATC	4 cut(s)	57, 225, 388, 613
Sau96I	GGNCC	2 cut(s)	118, 143
SchI	GAGTC	1 cut(s)	337
SetI	ASST	8 cut(s)	123, 148, 241, 322, 378, 493, 576, 654
SfaNI	GCATC	2 cut(s)	355, 735
SinI	GGWCC	2 cut(s)	118, 143
SmiMI	CAYNNNNRTG	2 cut(s)	327, 830
SmlI	CTYRAG	1 cut(s)	264
SmoI	CTYRAG	1 cut(s)	264
SpeI	ACTAGT	1 cut(s)	79
Sse9I	AATT	3 cut(s)	244, 412, 528
SsiI	CCGC	1 cut(s)	773
SspMI	CTAG	3 cut(s)	80, 443, 474
StyI	CCWWGG	1 cut(s)	563
TaaI	ACNGT	3 cut(s)	336, 687, 764
TaqI	TCGA	2 cut(s)	47, 363
TaqII	GACCGA	1 cut(s)	188
TasI	AATT	3 cut(s)	244, 412, 528
TfiI	GAWTC	3 cut(s)	108, 470, 675
Tru1I	TTAA	2 cut(s)	447, 819
Tru9I	TTAA	2 cut(s)	447, 819
TscAI	CASTG	2 cut(s)	67, 692
TseFI	GTSAC	2 cut(s)	86, 645
Tsp45I	GTSAC	2 cut(s)	86, 645
TspDTI	ATGAA	3 cut(s)	90, 345, 814
TspGWI	ACGGA	1 cut(s)	113
TspRI	CASTG	2 cut(s)	67, 692
Van91I	CCANNNNNTGG	1 cut(s)	814
VpaK11BI	GGWCC	2 cut(s)	118, 143
XapI	RAATTY	1 cut(s)	528
XbaI	TCTAGA	1 cut(s)	473
XcmI	CCANNNNNNNNNTGG	1 cut(s)	606
XmnI	GAANNNNTTC	1 cut(s)	81
XspI	CTAG	3 cut(s)	80, 443, 474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.