Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007648

Physical Location & Seq

Genomic Coordinates Forward (+)

28213666 .. 28215887

Gene Structure 2222 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G75170.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGTTTCGCTGGAAGAATTCTTCTCAAACCGAACAAGAGCAGAAAGAGGCAGCTCTCAGAGAGGCAAAGATGAAAGAGCTTAAGACTCTCATAGGTCAGCTTTCTGGAAGGAATTCACTGTATTGTTCAGATGCATGTCTGAAGAGATATCTGGAAGCTAGGAATTGGAATGTAGGCAAAGCCAAGAAGATGCTCGAGGAGACGCTCAAATGGAGATCGAGTTTTAAACCCGAGGAAATCCGATGGAATGAAGTTTCAGGTGAAGGTGAGACTGGTAAGGTTTACAAAGCTGGATTCCATGACAGGCATGGAAGAACGGTTCTTATACTGAGACCCGGCTTGCAGAACACAAAATCGTTGGAGAACCAGATGAAACATCTGGTGTATCTCATTGAGAATGCTATTCTGAATCTGCCAGAGGATCAAGAACAGATGTCTTGGCTTATTGACTTCACGGGTTGGTCAATGAGCACTAGTGTGCCTATTAAATCTGCCAGAGAAACTATTAATATTCTGCAAAATCACTACCCTGAGAGACTAGCTGTAGCTTTCCTCTATAATCCTCCAAGACTCTTTGAGGCGTTCTGGAAGATTGTGAAGTACTTCATTGATGCAAAGACATTCGTCAAGGTGAAGTTTGTTTACCCAAAGAACTCGGAAAGCGTGGAGCTTATGAGCACATTTTTCGACGAGGAAAATCTCCCAACCGAATTTGGAGGGAAAGCTTTGTTGCAGTATAACTATGAAGAGTTCTCCAAGCAAATGAACCAAGACGATGTTAAAACTGCTAACTTTTGGGGATTGGGTCACAGTAACAATAACCAGCTGCACGCGAGCAACGGGTTTTCTGGAGCTGAGATTGCCCCTGAGCCAATCCAAAACCACCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

296

Amino Acids

34.34

Weight (kDa)

7.74

Isoelectric Point (pI)

52.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO_N	PF03765	42 - 67	2.3e-07	CRAL/TRIO, N-terminal domain
CRAL_TRIO	PF00650	90 - 240	5.9e-39	CRAL/TRIO domain
CRAL_TRIO_2	PF13716	105 - 248	4e-10	Divergent CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75170 AT1G75170 AT1G75170
fragaria_vesca	FvH4_2g39850 FvH4_2g39850
malus_domestica	MD08G1032100.v1.1 MD15G1028100.v1.1
prunus_persica	Prupe.1G379800_v2.0.a1 Prupe.1G379800_v2.0.a1 Prupe.1G379800_v2.0.a1
pyrus_communis	pycom08g02540 pycom15g02450
rosa_chinensis	RchiOBHm_Chr6g0300991
rosa_laevigata	RLG00000011287 RLG00000034667
rosa_multiflora	Rmu_co8375471.1_g000001 Rmu_sc0011701.1_g000029
rosa_roxburghii	Rroxscaffold_7G00167280
rosa_rugosa	Rorug06G0299800 Rorug06G0299800
rosa_samantha	Rh6AG413700 Rh6BG420600 Rh6CG428200 Rh6DG413600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	833
AclWI	GGATC	1 cut(s)	429
AcsI	RAATTY	3 cut(s)	16, 112, 710
AcuI	CTGAAG	1 cut(s)	161
AfaI	GTAC	1 cut(s)	602
AflII	CTTAAG	1 cut(s)	80
AhlI	ACTAGT	1 cut(s)	473
AleI	CACNNNNGTG	1 cut(s)	476
AloI	GAACNNNNNNTCC	2 cut(s)	303, 335
Alw21I	GWGCWC	2 cut(s)	473, 680
Alw26I	GTCTC	4 cut(s)	194, 263, 325, 529
AlwI	GGATC	1 cut(s)	429
Ama87I	CYCGRG	2 cut(s)	194, 230
ApeKI	GCWGC	2 cut(s)	50, 826
ApoI	RAATTY	3 cut(s)	16, 112, 710
AseI	ATTAAT	1 cut(s)	507
Asp700I	GAANNNNTTC	2 cut(s)	112, 602
AsuC2I	CCSGG	1 cut(s)	336
AsuHPI	GGTGA	3 cut(s)	272, 278, 643
AvaI	CYCGRG	2 cut(s)	194, 230
BarI	GAAGNNNNNNTAC	2 cut(s)	626, 658
Bbv12I	GWGCWC	2 cut(s)	473, 680
BbvI	GCAGC	2 cut(s)	62, 813
BccI	CCATC	1 cut(s)	237
BcgI	CGANNNNNNTGC	2 cut(s)	667, 701
BcnI	CCSGG	1 cut(s)	336
BcoDI	GTCTC	4 cut(s)	194, 263, 325, 529
BcuI	ACTAGT	1 cut(s)	473
BfaI	CTAG	3 cut(s)	159, 474, 539
BfmI	CTRYAG	1 cut(s)	543
BfrI	CTTAAG	1 cut(s)	80
BisI	GCNGC	2 cut(s)	51, 827
BlsI	GCNGC	2 cut(s)	52, 828
BmcAI	AGTACT	1 cut(s)	602
Bme1390I	CCNGG	1 cut(s)	336
BmeT110I	CYCGRG	2 cut(s)	194, 230
BmrFI	CCNGG	1 cut(s)	336
BmsI	GCATC	3 cut(s)	121, 180, 601
BoxI	GACNNNNGTC	1 cut(s)	623
BpmI	CTGGAG	1 cut(s)	870
Bpu10I	CCTNAGC	1 cut(s)	867
BpuMI	CCSGG	1 cut(s)	336
BsaI	GGTCTC	1 cut(s)	325
BsaJI	CCNNGG	1 cut(s)	231
BsaXI	ACNNNNNCTCC	2 cut(s)	205, 235
Bse1I	ACTGG	1 cut(s)	277
BseDI	CCNNGG	1 cut(s)	231
BseMII	CTCAG	5 cut(s)	70, 320, 522, 846, 858
BseNI	ACTGG	1 cut(s)	277
BseRI	GAGGAG	1 cut(s)	212
BseXI	GCAGC	2 cut(s)	62, 813
BsgI	GTGCAG	1 cut(s)	812
Bsh1236I	CGCG	1 cut(s)	833
BsiHKAI	GWGCWC	2 cut(s)	473, 680
BsiHKCI	CYCGRG	2 cut(s)	194, 230
BsiSI	CCGG	1 cut(s)	336
BsmAI	GTCTC	4 cut(s)	194, 263, 325, 529
BsmBI	CGTCTC	1 cut(s)	194
BsmI	GAATGC	1 cut(s)	403
Bso31I	GGTCTC	1 cut(s)	325
BsoBI	CYCGRG	2 cut(s)	194, 230
Bsp1286I	GDGCHC	2 cut(s)	473, 680
Bsp143I	GATC	2 cut(s)	215, 421
BspCNI	CTCAG	5 cut(s)	69, 321, 523, 847, 859
BspFNI	CGCG	1 cut(s)	833
BspPI	GGATC	1 cut(s)	429
BspTI	CTTAAG	1 cut(s)	80
BspTNI	GGTCTC	1 cut(s)	325
BsrI	ACTGG	1 cut(s)	277
BssECI	CCNNGG	1 cut(s)	231
BssMI	GATC	2 cut(s)	215, 421
Bst4CI	ACNGT	3 cut(s)	120, 319, 812
Bst6I	CTCTTC	2 cut(s)	137, 741
BstAFI	CTTAAG	1 cut(s)	80
BstC8I	GCNNGC	3 cut(s)	341, 831, 835
BstDEI	CTNAG	5 cut(s)	56, 329, 531, 855, 867
BstFNI	CGCG	1 cut(s)	833
BstKTI	GATC	2 cut(s)	218, 424
BstMAI	GTCTC	4 cut(s)	194, 263, 325, 529
BstMBI	GATC	2 cut(s)	215, 421
BstMWI	GCNNNNNNNGC	1 cut(s)	860
BstNSI	RCATGY	1 cut(s)	138
BstPAI	GACNNNNGTC	1 cut(s)	623
BstSCI	CCNGG	1 cut(s)	334
BstSFI	CTRYAG	1 cut(s)	543
BstUI	CGCG	1 cut(s)	833
BstV1I	GCAGC	2 cut(s)	62, 813
BtsIMutI	CAGTG	1 cut(s)	116
Cac8I	GCNNGC	3 cut(s)	341, 831, 835
CseI	GACGC	1 cut(s)	211
Csp6I	GTAC	1 cut(s)	601
CviAII	CATG	3 cut(s)	135, 299, 308
CviQI	GTAC	1 cut(s)	601
DdeI	CTNAG	5 cut(s)	56, 329, 531, 855, 867
DpnI	GATC	2 cut(s)	217, 423
DpnII	GATC	2 cut(s)	215, 421
DraI	TTTAAA	1 cut(s)	226
Eam1104I	CTCTTC	2 cut(s)	137, 741
EarI	CTCTTC	2 cut(s)	137, 741
Eco31I	GGTCTC	1 cut(s)	325
Eco32I	GATATC	1 cut(s)	149
Eco57I	CTGAAG	1 cut(s)	161
Eco88I	CYCGRG	2 cut(s)	194, 230
EcoRI	GAATTC	2 cut(s)	16, 112
EcoRV	GATATC	1 cut(s)	149
EcoT22I	ATGCAT	1 cut(s)	136
Esp3I	CGTCTC	1 cut(s)	194
FaeI	CATG	3 cut(s)	138, 302, 311
FaiI	YATR	9 cut(s)	92, 136, 300, 309, 326, 558, 674, 738, 744
FatI	CATG	3 cut(s)	134, 298, 307
Fnu4HI	GCNGC	2 cut(s)	51, 827
Fsp4HI	GCNGC	2 cut(s)	51, 827
FspBI	CTAG	3 cut(s)	159, 474, 539
GluI	GCNGC	2 cut(s)	51, 827
GsuI	CTGGAG	1 cut(s)	870
HapII	CCGG	1 cut(s)	336
HgaI	GACGC	1 cut(s)	211
Hin1II	CATG	3 cut(s)	138, 302, 311
HindIII	AAGCTT	1 cut(s)	723
HinfI	GANTC	4 cut(s)	85, 294, 409, 570
HpaII	CCGG	1 cut(s)	336
HphI	GGTGA	3 cut(s)	272, 278, 643
Hpy166II	GTNNAC	2 cut(s)	283, 643
Hpy188I	TCNGA	6 cut(s)	59, 130, 141, 242, 408, 658
Hpy188III	TCNNGA	5 cut(s)	105, 152, 425, 586, 849
Hpy8I	GTNNAC	2 cut(s)	283, 643
Hpy99I	CGWCG	1 cut(s)	692
HpyAV	CCTTC	2 cut(s)	102, 257
HpyCH4III	ACNGT	3 cut(s)	120, 319, 812
HpyCH4V	TGCA	6 cut(s)	134, 343, 517, 614, 733, 829
HpyF10VI	GCNNNNNNNGC	1 cut(s)	860
HpyF3I	CTNAG	5 cut(s)	56, 329, 531, 855, 867
Hsp92II	CATG	3 cut(s)	138, 302, 311
Kzo9I	GATC	2 cut(s)	215, 421
LmnI	GCTCC	2 cut(s)	667, 851
Lsp1109I	GCAGC	2 cut(s)	62, 813
LweI	GCATC	3 cut(s)	121, 180, 601
MaeI	CTAG	3 cut(s)	159, 474, 539
MaeIII	GTNAC	2 cut(s)	806, 812
MalI	GATC	2 cut(s)	217, 423
MboI	GATC	2 cut(s)	215, 421
MboII	GAAGA	7 cut(s)	12, 25, 154, 199, 324, 601, 758
MhlI	GDGCHC	2 cut(s)	473, 680
MluCI	AATT	4 cut(s)	16, 112, 163, 710
MlyI	GAGTC	2 cut(s)	79, 564
MmeI	TCCRAC	1 cut(s)	339
Mph1103I	ATGCAT	1 cut(s)	136
MroXI	GAANNNNTTC	2 cut(s)	112, 602
MseI	TTAA	5 cut(s)	81, 225, 486, 507, 780
MslI	CAYNNNNRTG	1 cut(s)	476
MspA1I	CMGCKG	1 cut(s)	826
MspCI	CTTAAG	1 cut(s)	80
MspI	CCGG	1 cut(s)	336
MspR9I	CCNGG	1 cut(s)	336
Mva1269I	GAATGC	1 cut(s)	403
MvnI	CGCG	1 cut(s)	833
MwoI	GCNNNNNNNGC	1 cut(s)	860
NciI	CCSGG	1 cut(s)	336
NdeII	GATC	2 cut(s)	215, 421
NlaIII	CATG	3 cut(s)	138, 302, 311
NmuCI	GTSAC	1 cut(s)	806
NsiI	ATGCAT	1 cut(s)	136
NspI	RCATGY	1 cut(s)	138
OliI	CACNNNNGTG	1 cut(s)	476
PaeR7I	CTCGAG	1 cut(s)	194
PctI	GAATGC	1 cut(s)	403
PdmI	GAANNNNTTC	2 cut(s)	112, 602
PfeI	GAWTC	2 cut(s)	294, 409
PkrI	GCNGC	2 cut(s)	52, 828
PleI	GAGTC	2 cut(s)	79, 564
PpsI	GAGTC	2 cut(s)	79, 564
PshAI	GACNNNNGTC	1 cut(s)	623
PshBI	ATTAAT	1 cut(s)	507
PspXI	VCTCGAGB	1 cut(s)	194
PvuII	CAGCTG	1 cut(s)	826
RsaI	GTAC	1 cut(s)	602
RsaNI	GTAC	1 cut(s)	601
RseI	CAYNNNNRTG	1 cut(s)	476
SaqAI	TTAA	5 cut(s)	81, 225, 486, 507, 780
SatI	GCNGC	2 cut(s)	51, 827
Sau3AI	GATC	2 cut(s)	215, 421
ScaI	AGTACT	1 cut(s)	602
SchI	GAGTC	2 cut(s)	79, 564
ScrFI	CCNGG	1 cut(s)	336
SduI	GDGCHC	2 cut(s)	473, 680
SfaNI	GCATC	3 cut(s)	121, 180, 601
SfcI	CTRYAG	1 cut(s)	543
Sfr274I	CTCGAG	1 cut(s)	194
SlaI	CTCGAG	1 cut(s)	194
SmiMI	CAYNNNNRTG	1 cut(s)	476
SmlI	CTYRAG	2 cut(s)	80, 194
SmoI	CTYRAG	2 cut(s)	80, 194
SpeI	ACTAGT	1 cut(s)	473
Sse9I	AATT	4 cut(s)	16, 112, 163, 710
SspI	AATATT	1 cut(s)	511
SspMI	CTAG	3 cut(s)	159, 474, 539
StyD4I	CCNGG	1 cut(s)	334
TaaI	ACNGT	3 cut(s)	120, 319, 812
TaqI	TCGA	3 cut(s)	195, 218, 687
TasI	AATT	4 cut(s)	16, 112, 163, 710
TatI	WGTACW	1 cut(s)	600
TfiI	GAWTC	2 cut(s)	294, 409
Tru1I	TTAA	5 cut(s)	81, 225, 486, 507, 780
Tru9I	TTAA	5 cut(s)	81, 225, 486, 507, 780
TscAI	CASTG	1 cut(s)	123
TseFI	GTSAC	1 cut(s)	806
TseI	GCWGC	2 cut(s)	50, 826
Tsp45I	GTSAC	1 cut(s)	806
TspDTI	ATGAA	6 cut(s)	86, 264, 386, 595, 759, 779
TspRI	CASTG	1 cut(s)	123
Vha464I	CTTAAG	1 cut(s)	80
VspI	ATTAAT	1 cut(s)	507
XapI	RAATTY	3 cut(s)	16, 112, 710
XceI	RCATGY	1 cut(s)	138
XcmI	CCANNNNNNNNNTGG	1 cut(s)	305
XhoI	CTCGAG	1 cut(s)	194
XmnI	GAANNNNTTC	2 cut(s)	112, 602
XspI	CTAG	3 cut(s)	159, 474, 539
ZrmI	AGTACT	1 cut(s)	602
Zsp2I	ATGCAT	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.