Rorug06G0299800

CRAL/TRIO, N-terminal domain

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
45186767 .. 45193376
6610 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0299800.1

Sequence Viewer

Length: 1593 bp
ATGGATATAGACGCAGTAGTAGGCGGCGATTTTGCTTCACTGGATCCTGAGCTTTTACAGCTCCCGGAATTGTCACCCTTTGCTCTCAAAGCCAGTCCCCAAATCGCCGACGACTTGTTTTCTCAGTGGCTCTCGCTTCCTCAGACTGGCCGCCTGGTGAAATCTCTGATAGATGATGCATCGTCAGGCATTTCTATCGGTGCCCAAGGGAACTCTCTTAGTGCAAATGCCGCTGGGATCAACTCACTGCCTTCCATGTTTCAGGCTGGTAGTACACCCCCACTTTCACCGCGAAGTTCCTCTGGCTCTCCACGCTCTTCAAAGCCGAAAACCAGCCCCTCTTCGCTGGGCTCTCCGCTAAAATTGTTCTATTTTCAAAATGGTCGCCCACCACCTAACGGACTTAAGGAACAATGTCTTTCCAGAATTGATGACCTTTTCAGCAGTCATATGGATGGATTGCAAGTGCAGGAGTTTAAGACGGTTACAAAGGAAGTGTGCAAGCTACCGACATTTTTATCTTCTGCTCTCTTTAGAAAGATAGATACTGGCTGCAGTGGGATAGTGACCAGGGATGCATTCATCAGATATTGGGTTGATGGCAATATGATGACAATGGATACGGCAACTCAAGTATTTAAAATTTTAAAGCAGTCTGATTGCAATTACCTTACTCAGGTAGACTTCAAACCTGTACTTCTAGAGCTTGTGGCAACCCATCCAGGACTGGAATTTTTACATGGAACTCCTGAATTTCAAGAAAGATATGCTGAAACTGTCATTTACAGAATATTTTACTACATCAGTAGATCGGGAACTGGCCGTCTTACCCTCAGGGAGCTGAAACGAGGAAATCTTATTGCTGCCATGCAACATGCAGATGAGGAAGAGGATATTAATAAAGTTCTGAGGTACTTCTCTTATGAACATTTTTATGTAATATACTGCAAGTTTTGGGAGCTGGATACAGACCATGACTTCTTCATTGACAAAGAGAACCTCATTAGATATGGTAACCATGCCCTTACCTACAGGATCGTTGATAGAATATTTTCACAGGTTCCGAGGAAGTTTACTAGCAAGATCGAAGGGAAGATGGGTTATGAAGATTTTGTGTACTTCATGCTGTCAGAGGAGGATAAGTCATGTGAACCTAGCCTTGAGTATTGGTTCAAATGTATAGATTTGGATGGAAATGGAGTCCTTACACGGAATGAGTTGCAGTTCTTTTATGAGGAGCAGTTGCATCGTATGGAATGCATGGCCCAAGAACCTGTTCTATTTGAGGATATTTTATGCCAAATAGTAGACATGATTGGACCTGAGAAGGAAGATTATTTCACACTAAAGGACTTGAAAGGTTGCAAACTTTCTGGAAATTTCTTTAACATCCTTTTCAACCTCAATAAGTTCATAGCGTTTGAAAGTCGTGATCCATTTCTTATTCGTCAGGAACGCGAGGATCCAAGTTTGACAGAGTGGGATCGCTTTGCACACAGAGAGTATATAAGGCTTTCAATGGAAGAAGATGGTGAGAATGCCTCTAATGGAAGTGTAGAAGTTTGGGATGAATCACTGGAGGCTCCTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

530

Amino Acids

60.61

Weight (kDa)

4.86

Isoelectric Point (pI)

38.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_13 PF17958 207 - 296 4.5e-32 EF-hand domain
EF-hand_7 PF13499 312 - 411 5.2e-10 EF-hand domain pair
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 200
AccI GTMKAC 2 cut(s) 681, 1308
AccII CGCG 2 cut(s) 292, 1458
AciI CCGC 5 cut(s) 24, 151, 231, 290, 356
AclWI GGATC 8 cut(s) 38, 51, 245, 1043, 1427, 1457, 1470, 1491
AcoI YGGCCR 2 cut(s) 148, 820
AcsI RAATTY 4 cut(s) 642, 731, 752, 1378
AfaI GTAC 4 cut(s) 274, 696, 914, 1118
AfiI CCNNNNNNNGG 3 cut(s) 146, 398, 676
AflII CTTAAG 1 cut(s) 404
AgsI TTSAA 9 cut(s) 321, 377, 688, 758, 1174, 1357, 1399, 1424, 1518
AjnI CCWGG 3 cut(s) 153, 569, 721
AjuI GAANNNNNNNTTGG 2 cut(s) 1260, 1292
AluBI AGCT 6 cut(s) 52, 61, 505, 706, 841, 961
AluI AGCT 6 cut(s) 52, 61, 505, 706, 841, 961
AlwI GGATC 8 cut(s) 38, 51, 245, 1043, 1427, 1457, 1470, 1491
AoxI GGCC 3 cut(s) 148, 820, 1263
ApeKI GCWGC 2 cut(s) 552, 863
ApoI RAATTY 4 cut(s) 642, 731, 752, 1378
AseI ATTAAT 1 cut(s) 897
Asp700I GAANNNNTTC 2 cut(s) 1051, 1275
AspS9I GGNCC 2 cut(s) 1264, 1319
AsuC2I CCSGG 1 cut(s) 65
AsuHPI GGTGA 4 cut(s) 66, 169, 279, 1544
AvaII GGWCC 1 cut(s) 1319
AxyI CCTNAGG 1 cut(s) 833
BaeGI GKGCMC 1 cut(s) 205
BamHI GGATCC 2 cut(s) 43, 1462
BanI GGYRCC 1 cut(s) 200
BanII GRGCYC 1 cut(s) 353
BbvI GCAGC 2 cut(s) 539, 850
BccI CCATC 6 cut(s) 449, 593, 726, 1090, 1184, 1523
BceAI ACGGC 2 cut(s) 639, 807
BcgI CGANNNNNNTGC 4 cut(s) 178, 212, 1229, 1263
BciT130I CCWGG 3 cut(s) 155, 571, 723
BciVI GTATCC 2 cut(s) 613, 958
BcnI CCSGG 1 cut(s) 65
BfaI CTAG 3 cut(s) 701, 1077, 1155
BfmI CTRYAG 2 cut(s) 553, 1030
BfrI CTTAAG 1 cut(s) 404
BfuI GTATCC 2 cut(s) 613, 958
BisI GCNGC 5 cut(s) 25, 151, 231, 553, 864
BlsI GCNGC 5 cut(s) 26, 152, 232, 554, 865
Bme1390I CCNGG 4 cut(s) 65, 155, 571, 723
Bme18I GGWCC 1 cut(s) 1319
BmgT120I GGNCC 2 cut(s) 1264, 1319
BmiI GGNNCC 5 cut(s) 45, 202, 1062, 1464, 1584
BmrFI CCNGG 4 cut(s) 65, 155, 571, 723
BmsI GCATC 4 cut(s) 166, 188, 565, 1255
BplI GAGNNNNNCTC 2 cut(s) 1526, 1558
Bpu10I CCTNAGC 1 cut(s) 48
BpuEI CTTGAG 2 cut(s) 615, 1181
BpuMI CCSGG 1 cut(s) 65
BsaJI CCNNGG 3 cut(s) 205, 570, 1064
BsaXI ACNNNNNCTCC 2 cut(s) 1127, 1157
Bsc4I CCNNNNNNNGG 3 cut(s) 146, 398, 676
Bse1I ACTGG 7 cut(s) 45, 93, 151, 553, 732, 823, 1581
Bse21I CCTNAGG 1 cut(s) 833
BseBI CCWGG 3 cut(s) 155, 571, 723
BseDI CCNNGG 3 cut(s) 205, 570, 1064
BseGI GGATG 6 cut(s) 460, 580, 718, 1195, 1389, 1573
BseLI CCNNNNNNNGG 3 cut(s) 146, 398, 676
BseMII CTCAG 7 cut(s) 39, 137, 155, 689, 847, 899, 1314
BseNI ACTGG 7 cut(s) 45, 93, 151, 553, 732, 823, 1581
BseRI GAGGAG 2 cut(s) 1148, 1250
BseSI GKGCMC 1 cut(s) 205
BseXI GCAGC 2 cut(s) 539, 850
BseYI CCCAGC 2 cut(s) 233, 346
BsgI GTGCAG 1 cut(s) 488
Bsh1236I CGCG 2 cut(s) 292, 1458
BshFI GGCC 3 cut(s) 150, 822, 1265
BshNI GGYRCC 1 cut(s) 200
BsiSI CCGG 1 cut(s) 65
BslFI GGGAC 1 cut(s) 81
BslI CCNNNNNNNGG 3 cut(s) 146, 398, 676
BsmFI GGGAC 1 cut(s) 81
BsmI GAATGC 3 cut(s) 578, 1262, 1543
BsnI GGCC 3 cut(s) 150, 822, 1265
Bsp1286I GDGCHC 2 cut(s) 205, 353
Bsp143I GATC 8 cut(s) 43, 237, 809, 1035, 1083, 1432, 1462, 1483
BspACI CCGC 5 cut(s) 24, 151, 231, 290, 356
BspANI GGCC 3 cut(s) 150, 822, 1265
BspCNI CTCAG 7 cut(s) 40, 136, 154, 688, 846, 900, 1315
BspFNI CGCG 2 cut(s) 292, 1458
BspLI GGNNCC 5 cut(s) 45, 202, 1062, 1464, 1584
BspMAI CTGCAG 1 cut(s) 557
BspPI GGATC 8 cut(s) 38, 51, 245, 1043, 1427, 1457, 1470, 1491
BspQI GCTCTTC 1 cut(s) 322
BspT107I GGYRCC 1 cut(s) 200
BspTI CTTAAG 1 cut(s) 404
BsrI ACTGG 7 cut(s) 45, 93, 151, 553, 732, 823, 1581
BssECI CCNNGG 3 cut(s) 205, 570, 1064
BssMI GATC 8 cut(s) 43, 237, 809, 1035, 1083, 1432, 1462, 1483
BssT1I CCWWGG 1 cut(s) 205
Bst2UI CCWGG 3 cut(s) 155, 571, 723
Bst4CI ACNGT 2 cut(s) 484, 778
Bst6I CTCTTC 3 cut(s) 322, 346, 882
BstAFI CTTAAG 1 cut(s) 404
BstC8I GCNNGC 1 cut(s) 503
BstDEI CTNAG 8 cut(s) 48, 123, 141, 218, 675, 833, 908, 1323
BstEII GGTNACC 1 cut(s) 1013
BstENI CCTNNNNNAGG 1 cut(s) 674
BstF5I GGATG 6 cut(s) 460, 580, 718, 1195, 1389, 1573
BstFNI CGCG 2 cut(s) 292, 1458
BstKTI GATC 8 cut(s) 46, 240, 812, 1038, 1086, 1435, 1465, 1486
BstMBI GATC 8 cut(s) 43, 237, 809, 1035, 1083, 1432, 1462, 1483
BstMWI GCNNNNNNNGC 4 cut(s) 58, 89, 230, 312
BstNI CCWGG 3 cut(s) 155, 571, 723
BstNSI RCATGY 1 cut(s) 878
BstPI GGTNACC 1 cut(s) 1013
BstSCI CCNGG 4 cut(s) 63, 153, 569, 721
BstSFI CTRYAG 2 cut(s) 553, 1030
BstSLI GKGCMC 1 cut(s) 205
BstUI CGCG 2 cut(s) 292, 1458
BstV1I GCAGC 2 cut(s) 539, 850
BstX2I RGATCY 2 cut(s) 43, 1462
BstYI RGATCY 2 cut(s) 43, 1462
Bsu36I CCTNAGG 1 cut(s) 833
BsuI GTATCC 2 cut(s) 613, 958
BsuRI GGCC 3 cut(s) 150, 822, 1265
BtsCI GGATG 6 cut(s) 460, 580, 718, 1195, 1389, 1573
BtsI GCAGTG 2 cut(s) 245, 562
BtsIMutI CAGTG 5 cut(s) 38, 131, 245, 562, 1574
Cac8I GCNNGC 1 cut(s) 503
Cfr13I GGNCC 2 cut(s) 1264, 1319
CseI GACGC 1 cut(s) 20
Csp6I GTAC 4 cut(s) 273, 695, 913, 1117
CviQI GTAC 4 cut(s) 273, 695, 913, 1117
DdeI CTNAG 8 cut(s) 48, 123, 141, 218, 675, 833, 908, 1323
DpnI GATC 8 cut(s) 45, 239, 811, 1037, 1085, 1434, 1464, 1485
DpnII GATC 8 cut(s) 43, 237, 809, 1035, 1083, 1432, 1462, 1483
DraI TTTAAA 2 cut(s) 640, 648
EaeI YGGCCR 2 cut(s) 148, 820
Eam1104I CTCTTC 3 cut(s) 322, 346, 882
EarI CTCTTC 3 cut(s) 322, 346, 882
Eco130I CCWWGG 1 cut(s) 205
Eco24I GRGCYC 1 cut(s) 353
Eco47I GGWCC 1 cut(s) 1319
Eco81I CCTNAGG 1 cut(s) 833
Eco91I GGTNACC 1 cut(s) 1013
EcoNI CCTNNNNNAGG 1 cut(s) 674
EcoO65I GGTNACC 1 cut(s) 1013
EcoRII CCWGG 3 cut(s) 153, 569, 721
EcoT14I CCWWGG 1 cut(s) 205
EcoT22I ATGCAT 3 cut(s) 181, 580, 1262
EcoT38I GRGCYC 1 cut(s) 353
ErhI CCWWGG 1 cut(s) 205
FaqI GGGAC 1 cut(s) 81
FauNDI CATATG 1 cut(s) 450
FblI GTMKAC 2 cut(s) 681, 1308
Fnu4HI GCNGC 5 cut(s) 25, 151, 231, 553, 864
FokI GGATG 6 cut(s) 467, 587, 705, 1202, 1376, 1580
FriOI GRGCYC 1 cut(s) 353
Fsp4HI GCNGC 5 cut(s) 25, 151, 231, 553, 864
FspBI CTAG 3 cut(s) 701, 1077, 1155
GluI GCNGC 5 cut(s) 25, 151, 231, 553, 864
GsaI CCCAGC 2 cut(s) 237, 350
HaeIII GGCC 3 cut(s) 150, 822, 1265
HapII CCGG 1 cut(s) 65
HgaI GACGC 1 cut(s) 20
HinfI GANTC 2 cut(s) 1200, 1571
HpaII CCGG 1 cut(s) 65
HphI GGTGA 4 cut(s) 66, 169, 279, 1544
Hpy166II GTNNAC 6 cut(s) 275, 682, 1074, 1117, 1151, 1309
Hpy188I TCNGA 7 cut(s) 144, 168, 587, 658, 909, 1065, 1132
Hpy188III TCNNGA 9 cut(s) 47, 423, 701, 749, 758, 813, 1374, 1430, 1451
Hpy8I GTNNAC 6 cut(s) 275, 682, 1074, 1117, 1151, 1309
Hpy99I CGWCG 1 cut(s) 113
HpyAV CCTTC 3 cut(s) 261, 1082, 1321
HpyCH4III ACNGT 2 cut(s) 484, 778
HpyF10VI GCNNNNNNNGC 4 cut(s) 58, 89, 230, 312
HpyF3I CTNAG 8 cut(s) 48, 123, 141, 218, 675, 833, 908, 1323
Kzo9I GATC 8 cut(s) 43, 237, 809, 1035, 1083, 1432, 1462, 1483
LguI GCTCTTC 1 cut(s) 322
LmnI GCTCC 5 cut(s) 66, 838, 958, 1237, 1588
Lsp1109I GCAGC 2 cut(s) 539, 850
LweI GCATC 4 cut(s) 166, 188, 565, 1255
MaeI CTAG 3 cut(s) 701, 1077, 1155
MaeIII GTNAC 4 cut(s) 72, 484, 565, 1013
MalI GATC 8 cut(s) 45, 239, 811, 1037, 1085, 1434, 1464, 1485
MboI GATC 8 cut(s) 43, 237, 809, 1035, 1083, 1432, 1462, 1483
MflI RGATCY 2 cut(s) 43, 1462
MhlI GDGCHC 2 cut(s) 205, 353
MluCI AATT 8 cut(s) 68, 362, 426, 642, 664, 731, 752, 1378
MlyI GAGTC 1 cut(s) 1209
Mph1103I ATGCAT 3 cut(s) 181, 580, 1262
MroXI GAANNNNTTC 2 cut(s) 1051, 1275
MseI TTAA 7 cut(s) 405, 477, 639, 647, 897, 1386, 1591
MslI CAYNNNNRTG 3 cut(s) 453, 879, 933
MspA1I CMGCKG 1 cut(s) 233
MspCI CTTAAG 1 cut(s) 404
MspI CCGG 1 cut(s) 65
MspR9I CCNGG 4 cut(s) 65, 155, 571, 723
Mva1269I GAATGC 3 cut(s) 578, 1262, 1543
MvaI CCWGG 3 cut(s) 155, 571, 723
MvnI CGCG 2 cut(s) 292, 1458
MwoI GCNNNNNNNGC 4 cut(s) 58, 89, 230, 312
NciI CCSGG 1 cut(s) 65
NdeI CATATG 1 cut(s) 450
NdeII GATC 8 cut(s) 43, 237, 809, 1035, 1083, 1432, 1462, 1483
NlaIV GGNNCC 5 cut(s) 45, 202, 1062, 1464, 1584
NmuCI GTSAC 2 cut(s) 72, 565
NsiI ATGCAT 3 cut(s) 181, 580, 1262
NspI RCATGY 1 cut(s) 878
PciSI GCTCTTC 1 cut(s) 322
PctI GAATGC 3 cut(s) 578, 1262, 1543
PdmI GAANNNNTTC 2 cut(s) 1051, 1275
PfeI GAWTC 1 cut(s) 1571
PfoI TCCNGGA 2 cut(s) 63, 721
PkrI GCNGC 5 cut(s) 26, 152, 232, 554, 865
PleI GAGTC 1 cut(s) 1208
PpsI GAGTC 1 cut(s) 1208
PshBI ATTAAT 1 cut(s) 897
Psp6I CCWGG 3 cut(s) 153, 569, 721
PspEI GGTNACC 1 cut(s) 1013
PspFI CCCAGC 2 cut(s) 233, 346
PspGI CCWGG 3 cut(s) 153, 569, 721
PspN4I GGNNCC 5 cut(s) 45, 202, 1062, 1464, 1584
PspPI GGNCC 2 cut(s) 1264, 1319
PstI CTGCAG 1 cut(s) 557
PsuI RGATCY 2 cut(s) 43, 1462
RsaI GTAC 4 cut(s) 274, 696, 914, 1118
RsaNI GTAC 4 cut(s) 273, 695, 913, 1117
RseI CAYNNNNRTG 3 cut(s) 453, 879, 933
SapI GCTCTTC 1 cut(s) 322
SaqAI TTAA 7 cut(s) 405, 477, 639, 647, 897, 1386, 1591
SatI GCNGC 5 cut(s) 25, 151, 231, 553, 864
Sau3AI GATC 8 cut(s) 43, 237, 809, 1035, 1083, 1432, 1462, 1483
Sau96I GGNCC 2 cut(s) 1264, 1319
SchI GAGTC 1 cut(s) 1209
ScrFI CCNGG 4 cut(s) 65, 155, 571, 723
SduI GDGCHC 2 cut(s) 205, 353
SfaNI GCATC 4 cut(s) 166, 188, 565, 1255
SfcI CTRYAG 2 cut(s) 553, 1030
SinI GGWCC 1 cut(s) 1319
SmiMI CAYNNNNRTG 3 cut(s) 453, 879, 933
SmlI CTYRAG 3 cut(s) 404, 630, 1160
SmoI CTYRAG 3 cut(s) 404, 630, 1160
Sse9I AATT 8 cut(s) 68, 362, 426, 642, 664, 731, 752, 1378
SsiI CCGC 5 cut(s) 24, 151, 231, 290, 356
SspI AATATT 2 cut(s) 792, 1050
SspMI CTAG 3 cut(s) 701, 1077, 1155
StyD4I CCNGG 4 cut(s) 63, 153, 569, 721
StyI CCWWGG 1 cut(s) 205
TaaI ACNGT 2 cut(s) 484, 778
TaqI TCGA 1 cut(s) 1086
TasI AATT 8 cut(s) 68, 362, 426, 642, 664, 731, 752, 1378
TatI WGTACW 3 cut(s) 272, 694, 1116
TauI GCSGC 3 cut(s) 27, 153, 233
TfiI GAWTC 1 cut(s) 1571
Tru1I TTAA 7 cut(s) 405, 477, 639, 647, 897, 1386, 1591
Tru9I TTAA 7 cut(s) 405, 477, 639, 647, 897, 1386, 1591
TscAI CASTG 5 cut(s) 45, 131, 252, 562, 1581
TseFI GTSAC 2 cut(s) 72, 565
TseI GCWGC 2 cut(s) 552, 863
Tsp45I GTSAC 2 cut(s) 72, 565
TspDTI ATGAA 7 cut(s) 571, 939, 973, 1111, 1119, 1402, 1584
TspGWI ACGGA 2 cut(s) 414, 1225
TspRI CASTG 5 cut(s) 45, 131, 252, 562, 1581
Vha464I CTTAAG 1 cut(s) 404
VpaK11BI GGWCC 1 cut(s) 1319
VspI ATTAAT 1 cut(s) 897
XagI CCTNNNNNAGG 1 cut(s) 674
XapI RAATTY 4 cut(s) 642, 731, 752, 1378
XbaI TCTAGA 1 cut(s) 700
XceI RCATGY 1 cut(s) 878
XmiI GTMKAC 2 cut(s) 681, 1308
XmnI GAANNNNTTC 2 cut(s) 1051, 1275
XspI CTAG 3 cut(s) 701, 1077, 1155
Zsp2I ATGCAT 3 cut(s) 181, 580, 1262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.