Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0007648

Physical Location & Seq

Genomic Coordinates Reverse (-)

1872910 .. 1874194

Gene Structure 1285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g02540.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGTTGCGCCTCTGGAGCGGTTCTCATCTGCAAGTGAACGATCCGTTGAAGCACGAGGCTAAGATCGATCTTCTGAAGGCTGCGATTGGACCGCTATCTGGACGCAGTTTACAGTTCTGCACTGATGCATGCTTCAGGAGGTACTTGGAGGCGCGAAATTGGAACGTGGACAAAGCGAAGAAAATGTTGGATGAAACACTCAAATGGAGGTCAACCTATAAGCCCGAGGACATCCGCTGGCCCGAAGTTGCAAGTGAAGGCGAGACTGGAAAAGTTTACAGAGCAAGTTTTCGCGATCGTAGTGGGAGGAGTGTTCTTATACTGAGACCGGGAATGCAGAACACGGTGTCAATAGACAATCAAATGCGTCATCTGGTGTATCTGATTGAGAATGCTGTATTCAACCTTCCAGAGGGCCAAGAACAAATGGCGTGGCTGATTGACTTCACGGGGTGGACGCTAAGTACTACCGTGCCTGTGAAATCAGCTCGAGACACCATCAATATTTTACAGAACCACTACCCCGAGAGACTTGCAGTAGCATTTCTCTACAATCCCCCACGCATCTTTGAAGCGTTTTGGAAGATTGTGAAGTATTTCTTGGACAACAAGACATTCCACAAGGTTAAGTTCGTTTACCCGAAGAACAAAGATAGCGTGGAGCTTATGAAACAATATTTCGATGAGGAAAATCTCCCTACTGAGTTTGGAGGACCGGCCATACTAAACTATCGATCACGAGGAATTCTCGAAATTAATGAATCAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

257

Amino Acids

29.92

Weight (kDa)

9.19

Isoelectric Point (pI)

54.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75170 AT1G75170 AT1G75170
fragaria_vesca	FvH4_2g39850 FvH4_2g39850
malus_domestica	MD08G1032100.v1.1 MD15G1028100.v1.1
prunus_persica	Prupe.1G379800_v2.0.a1 Prupe.1G379800_v2.0.a1 Prupe.1G379800_v2.0.a1
pyrus_communis	pycom08g02540 pycom15g02450
rosa_chinensis	RchiOBHm_Chr6g0300991
rosa_laevigata	RLG00000011287 RLG00000034667
rosa_multiflora	Rmu_co8375471.1_g000001 Rmu_sc0011701.1_g000029
rosa_roxburghii	Rroxscaffold_7G00167280
rosa_rugosa	Rorug06G0299800 Rorug06G0299800
rosa_samantha	Rh6AG413700 Rh6BG420600 Rh6CG428200 Rh6DG413600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	18
AccII	CGCG	2 cut(s)	154, 294
AciI	CCGC	3 cut(s)	18, 92, 235
AclWI	GGATC	1 cut(s)	35
AcoI	YGGCCR	1 cut(s)	717
AcsI	RAATTY	1 cut(s)	744
AcuI	CTGAAG	2 cut(s)	95, 118
AdeI	CACNNNGTG	1 cut(s)	453
AfaI	GTAC	2 cut(s)	143, 466
AfiI	CCNNNNNNNGG	2 cut(s)	98, 412
AgsI	TTSAA	3 cut(s)	49, 403, 572
AjuI	GAANNNNNNNTTGG	4 cut(s)	170, 202, 584, 616
AluBI	AGCT	2 cut(s)	488, 664
AluI	AGCT	2 cut(s)	488, 664
Alw26I	GTCTC	4 cut(s)	257, 319, 486, 523
AlwI	GGATC	1 cut(s)	35
Ama87I	CYCGRG	3 cut(s)	224, 489, 524
AoxI	GGCC	3 cut(s)	239, 415, 717
ApeKI	GCWGC	1 cut(s)	80
ApoI	RAATTY	1 cut(s)	744
AseI	ATTAAT	1 cut(s)	756
Asp700I	GAANNNNTTC	1 cut(s)	596
AspLEI	GCGC	2 cut(s)	9, 154
AspS9I	GGNCC	4 cut(s)	89, 240, 415, 713
AsuC2I	CCSGG	1 cut(s)	330
AvaI	CYCGRG	3 cut(s)	224, 489, 524
AvaII	GGWCC	2 cut(s)	89, 713
BarI	GAAGNNNNNNTAC	2 cut(s)	390, 422
BauI	CACGAG	2 cut(s)	53, 738
BbvI	GCAGC	1 cut(s)	67
BccI	CCATC	1 cut(s)	506
BcgI	CGANNNNNNTGC	2 cut(s)	515, 549
BcnI	CCSGG	1 cut(s)	330
BcoDI	GTCTC	4 cut(s)	257, 319, 486, 523
BisI	GCNGC	1 cut(s)	81
BlsI	GCNGC	1 cut(s)	82
BmcAI	AGTACT	1 cut(s)	466
Bme1390I	CCNGG	1 cut(s)	330
Bme18I	GGWCC	2 cut(s)	89, 713
BmeT110I	CYCGRG	3 cut(s)	224, 489, 524
BmgT120I	GGNCC	4 cut(s)	89, 240, 415, 713
BmrFI	CCNGG	1 cut(s)	330
BmsI	GCATC	2 cut(s)	115, 573
BplI	GAGNNNNNCTC	4 cut(s)	7, 39, 732, 764
BpmI	CTGGAG	1 cut(s)	34
BpuMI	CCSGG	1 cut(s)	330
Bsa29I	ATCGAT	2 cut(s)	66, 733
BsaI	GGTCTC	1 cut(s)	319
BsaJI	CCNNGG	1 cut(s)	225
Bsc4I	CCNNNNNNNGG	2 cut(s)	98, 412
Bse118I	RCCGGY	1 cut(s)	715
Bse1I	ACTGG	1 cut(s)	271
BseCI	ATCGAT	2 cut(s)	66, 733
BseDI	CCNNGG	1 cut(s)	225
BseGI	GGATG	2 cut(s)	196, 231
BseLI	CCNNNNNNNGG	2 cut(s)	98, 412
BseMII	CTCAG	2 cut(s)	314, 693
BseNI	ACTGG	1 cut(s)	271
BseRI	GAGGAG	1 cut(s)	322
BseXI	GCAGC	1 cut(s)	67
BsgI	GTGCAG	1 cut(s)	103
Bsh1236I	CGCG	2 cut(s)	154, 294
Bsh1285I	CGRYCG	1 cut(s)	298
BshFI	GGCC	3 cut(s)	241, 417, 719
BshVI	ATCGAT	2 cut(s)	66, 733
BsiEI	CGRYCG	1 cut(s)	298
BsiHKCI	CYCGRG	3 cut(s)	224, 489, 524
BsiSI	CCGG	2 cut(s)	329, 716
BslI	CCNNNNNNNGG	2 cut(s)	98, 412
BsmAI	GTCTC	4 cut(s)	257, 319, 486, 523
BsmI	GAATGC	2 cut(s)	339, 397
BsnI	GGCC	3 cut(s)	241, 417, 719
Bso31I	GGTCTC	1 cut(s)	319
BsoBI	CYCGRG	3 cut(s)	224, 489, 524
Bsp143I	GATC	5 cut(s)	40, 63, 67, 295, 734
Bsp68I	TCGCGA	1 cut(s)	294
BspACI	CCGC	3 cut(s)	18, 92, 235
BspANI	GGCC	3 cut(s)	241, 417, 719
BspCNI	CTCAG	2 cut(s)	315, 694
BspDI	ATCGAT	2 cut(s)	66, 733
BspFNI	CGCG	2 cut(s)	154, 294
BspPI	GGATC	1 cut(s)	35
BspTNI	GGTCTC	1 cut(s)	319
BsrBI	CCGCTC	1 cut(s)	18
BsrFI	RCCGGY	1 cut(s)	715
BsrI	ACTGG	1 cut(s)	271
BssAI	RCCGGY	1 cut(s)	715
BssECI	CCNNGG	1 cut(s)	225
BssMI	GATC	5 cut(s)	40, 63, 67, 295, 734
BssSI	CACGAG	2 cut(s)	53, 738
Bst2BI	CACGAG	2 cut(s)	53, 738
Bst4CI	ACNGT	3 cut(s)	114, 346, 472
BstC8I	GCNNGC	2 cut(s)	130, 239
BstDEI	CTNAG	4 cut(s)	60, 323, 461, 702
BstENI	CCTNNNNNAGG	1 cut(s)	410
BstF5I	GGATG	2 cut(s)	196, 231
BstFNI	CGCG	2 cut(s)	154, 294
BstHHI	GCGC	2 cut(s)	9, 154
BstKTI	GATC	5 cut(s)	43, 66, 70, 298, 737
BstMAI	GTCTC	4 cut(s)	257, 319, 486, 523
BstMBI	GATC	5 cut(s)	40, 63, 67, 295, 734
BstMCI	CGRYCG	1 cut(s)	298
BstMWI	GCNNNNNNNGC	1 cut(s)	15
BstNSI	RCATGY	1 cut(s)	132
BstSCI	CCNGG	1 cut(s)	328
BstUI	CGCG	2 cut(s)	154, 294
BstV1I	GCAGC	1 cut(s)	67
Bsu15I	ATCGAT	2 cut(s)	66, 733
BsuRI	GGCC	3 cut(s)	241, 417, 719
BsuTUI	ATCGAT	2 cut(s)	66, 733
BtsCI	GGATG	2 cut(s)	196, 231
BtsIMutI	CAGTG	1 cut(s)	120
BtuMI	TCGCGA	1 cut(s)	294
Cac8I	GCNNGC	2 cut(s)	130, 239
CfoI	GCGC	2 cut(s)	9, 154
Cfr10I	RCCGGY	1 cut(s)	715
Cfr13I	GGNCC	4 cut(s)	89, 240, 415, 713
ClaI	ATCGAT	2 cut(s)	66, 733
CseI	GACGC	3 cut(s)	111, 356, 466
Csp6I	GTAC	2 cut(s)	142, 465
CspCI	CAANNNNNGTGG	2 cut(s)	413, 448
CviAII	CATG	1 cut(s)	129
CviJI	RGCY	9 cut(s)	59, 80, 223, 241, 417, 436, 488, 664, 719
CviKI_1	RGCY	9 cut(s)	59, 80, 223, 241, 417, 436, 488, 664, 719
CviQI	GTAC	2 cut(s)	142, 465
DdeI	CTNAG	4 cut(s)	60, 323, 461, 702
DpnI	GATC	5 cut(s)	42, 65, 69, 297, 736
DpnII	GATC	5 cut(s)	40, 63, 67, 295, 734
DraIII	CACNNNGTG	1 cut(s)	453
EaeI	YGGCCR	1 cut(s)	717
Eco31I	GGTCTC	1 cut(s)	319
Eco47I	GGWCC	2 cut(s)	89, 713
Eco57I	CTGAAG	2 cut(s)	95, 118
Eco88I	CYCGRG	3 cut(s)	224, 489, 524
EcoNI	CCTNNNNNAGG	1 cut(s)	410
EcoRI	GAATTC	1 cut(s)	744
EcoT22I	ATGCAT	1 cut(s)	130
FaeI	CATG	1 cut(s)	132
FaiI	YATR	5 cut(s)	130, 219, 320, 668, 722
FalI	AAGNNNNNCTT	2 cut(s)	584, 616
FatI	CATG	1 cut(s)	128
Fnu4HI	GCNGC	1 cut(s)	81
FokI	GGATG	2 cut(s)	203, 218
Fsp4HI	GCNGC	1 cut(s)	81
GlaI	GCGC	2 cut(s)	8, 153
GluI	GCNGC	1 cut(s)	81
GsuI	CTGGAG	1 cut(s)	34
HaeIII	GGCC	3 cut(s)	241, 417, 719
HapII	CCGG	2 cut(s)	329, 716
HgaI	GACGC	3 cut(s)	111, 356, 466
HhaI	GCGC	2 cut(s)	9, 154
Hin1II	CATG	1 cut(s)	132
Hin6I	GCGC	2 cut(s)	7, 152
HinP1I	GCGC	2 cut(s)	7, 152
HincII	GTYRAC	1 cut(s)	213
HindII	GTYRAC	1 cut(s)	213
HinfI	GANTC	1 cut(s)	761
HpaII	CCGG	2 cut(s)	329, 716
Hpy166II	GTNNAC	7 cut(s)	37, 110, 169, 213, 277, 456, 637
Hpy188I	TCNGA	2 cut(s)	75, 384
Hpy188III	TCNNGA	9 cut(s)	13, 99, 136, 293, 410, 491, 738, 749, 765
Hpy8I	GTNNAC	7 cut(s)	37, 110, 169, 213, 277, 456, 637
HpyAV	CCTTC	3 cut(s)	70, 251, 416
HpyCH4III	ACNGT	3 cut(s)	114, 346, 472
HpyCH4IV	ACGT	1 cut(s)	165
HpyCH4V	TGCA	6 cut(s)	31, 120, 128, 251, 337, 536
HpyF10VI	GCNNNNNNNGC	1 cut(s)	15
HpyF3I	CTNAG	4 cut(s)	60, 323, 461, 702
HpySE526I	ACGT	1 cut(s)	165
Hsp92II	CATG	1 cut(s)	132
HspAI	GCGC	2 cut(s)	7, 152
Kzo9I	GATC	5 cut(s)	40, 63, 67, 295, 734
LmnI	GCTCC	2 cut(s)	15, 661
LpnPI	CCDG	9 cut(s)	84, 121, 223, 252, 342, 359, 423, 489, 729
Lsp1109I	GCAGC	1 cut(s)	67
LweI	GCATC	2 cut(s)	115, 573
MaeII	ACGT	1 cut(s)	165
MalI	GATC	5 cut(s)	42, 65, 69, 297, 736
MbiI	CCGCTC	1 cut(s)	18
MboI	GATC	5 cut(s)	40, 63, 67, 295, 734
MboII	GAAGA	4 cut(s)	62, 190, 595, 655
MluCI	AATT	3 cut(s)	157, 744, 753
MmeI	TCCRAC	1 cut(s)	168
Mph1103I	ATGCAT	1 cut(s)	130
MroXI	GAANNNNTTC	1 cut(s)	596
MseI	TTAA	2 cut(s)	627, 756
MslI	CAYNNNNRTG	1 cut(s)	202
MspA1I	CMGCKG	1 cut(s)	237
MspI	CCGG	2 cut(s)	329, 716
MspR9I	CCNGG	1 cut(s)	330
Mva1269I	GAATGC	2 cut(s)	339, 397
MvnI	CGCG	2 cut(s)	154, 294
MwoI	GCNNNNNNNGC	1 cut(s)	15
NciI	CCSGG	1 cut(s)	330
NdeII	GATC	5 cut(s)	40, 63, 67, 295, 734
NlaIII	CATG	1 cut(s)	132
NruI	TCGCGA	1 cut(s)	294
NsiI	ATGCAT	1 cut(s)	130
NspI	RCATGY	1 cut(s)	132
PaeI	GCATGC	1 cut(s)	132
PaeR7I	CTCGAG	1 cut(s)	489
PctI	GAATGC	2 cut(s)	339, 397
PdmI	GAANNNNTTC	1 cut(s)	596
PfeI	GAWTC	1 cut(s)	761
PkrI	GCNGC	1 cut(s)	82
Ple19I	CGATCG	1 cut(s)	298
PshBI	ATTAAT	1 cut(s)	756
PspPI	GGNCC	4 cut(s)	89, 240, 415, 713
PvuI	CGATCG	1 cut(s)	298
RruI	TCGCGA	1 cut(s)	294
RsaI	GTAC	2 cut(s)	143, 466
RsaNI	GTAC	2 cut(s)	142, 465
RseI	CAYNNNNRTG	1 cut(s)	202
SaqAI	TTAA	2 cut(s)	627, 756
SatI	GCNGC	1 cut(s)	81
Sau3AI	GATC	5 cut(s)	40, 63, 67, 295, 734
Sau96I	GGNCC	4 cut(s)	89, 240, 415, 713
ScaI	AGTACT	1 cut(s)	466
ScrFI	CCNGG	1 cut(s)	330
SetI	ASST	8 cut(s)	143, 168, 212, 218, 408, 490, 627, 666
SfaNI	GCATC	2 cut(s)	115, 573
Sfr274I	CTCGAG	1 cut(s)	489
SinI	GGWCC	2 cut(s)	89, 713
SlaI	CTCGAG	1 cut(s)	489
SmiMI	CAYNNNNRTG	1 cut(s)	202
SmlI	CTYRAG	1 cut(s)	489
SmoI	CTYRAG	1 cut(s)	489
SphI	GCATGC	1 cut(s)	132
Sse9I	AATT	3 cut(s)	157, 744, 753
SsiI	CCGC	3 cut(s)	18, 92, 235
SspI	AATATT	2 cut(s)	505, 677
StyD4I	CCNGG	1 cut(s)	328
TaaI	ACNGT	3 cut(s)	114, 346, 472
TaiI	ACGT	1 cut(s)	168
TaqI	TCGA	5 cut(s)	66, 490, 681, 733, 750
TasI	AATT	3 cut(s)	157, 744, 753
TatI	WGTACW	1 cut(s)	464
TfiI	GAWTC	1 cut(s)	761
Tru1I	TTAA	2 cut(s)	627, 756
Tru9I	TTAA	2 cut(s)	627, 756
TscAI	CASTG	1 cut(s)	127
TseI	GCWGC	1 cut(s)	80
TspDTI	ATGAA	2 cut(s)	207, 683
TspGWI	ACGGA	1 cut(s)	33
TspRI	CASTG	1 cut(s)	127
VpaK11BI	GGWCC	2 cut(s)	89, 713
VspI	ATTAAT	1 cut(s)	756
XagI	CCTNNNNNAGG	1 cut(s)	410
XapI	RAATTY	1 cut(s)	744
XceI	RCATGY	1 cut(s)	132
XhoI	CTCGAG	1 cut(s)	489
XmnI	GAANNNNTTC	1 cut(s)	596
ZrmI	AGTACT	1 cut(s)	466
Zsp2I	ATGCAT	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.