RLG00000034667

CRAL/TRIO, N-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0007648
Physical Location & Seq
Forward (+)
47519123 .. 47519710
588 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034667

Sequence Viewer

Length: 312 bp
ATGATTCGTGACCATGTTTGGCTACTGGGGAAAGTCTCATCATCACAAGATGATTCATTGCAGCCTGAGGTGAAGTTCAACGAGCTAAAGGCTGCAATTGGACCACCATCGTGCCGTATTTTGCAGTTCTGTACTGATGCGTGCTTTAGGAGGTACTTGGATGCGGAGAACGGGAATGTAGACAAGTCGAAGAAAATGTTGGAAGAAACACTCAAATGGAGGTCGACTTATAAGCCTGAGGAAATTAGTTGGCCTGAAGTTGCAATTGAAGGTGAGACTGGAAAAGTTTATAGAGACCAACAATGCAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRAL_TRIO CRAL_TRIO_N

Protein Analysis

104

Amino Acids

11.94

Weight (kDa)

5.85

Isoelectric Point (pI)

60.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 231
Acc36I ACCTGC 1 cut(s) 297
AccI GTMKAC 2 cut(s) 180, 224
AciI CCGC 1 cut(s) 164
AcuI CTGAAG 1 cut(s) 276
AfaI GTAC 2 cut(s) 133, 155
AgsI TTSAA 2 cut(s) 79, 269
AjuI GAANNNNNNNTTGG 2 cut(s) 182, 214
AleI CACNNNNGTG 1 cut(s) 109
AluBI AGCT 1 cut(s) 85
AluI AGCT 1 cut(s) 85
Alw26I GTCTC 3 cut(s) 40, 269, 288
AoxI GGCC 1 cut(s) 251
ApeKI GCWGC 2 cut(s) 61, 92
AspS9I GGNCC 1 cut(s) 101
AsuHPI GGTGA 2 cut(s) 82, 284
AvaII GGWCC 1 cut(s) 101
AxyI CCTNAGG 2 cut(s) 66, 237
BbvI GCAGC 2 cut(s) 73, 79
BccI CCATC 1 cut(s) 115
BceAI ACGGC 1 cut(s) 99
BcoDI GTCTC 3 cut(s) 40, 269, 288
BfuAI ACCTGC 1 cut(s) 297
BisI GCNGC 2 cut(s) 62, 93
BlsI GCNGC 2 cut(s) 63, 94
Bme18I GGWCC 1 cut(s) 101
BmgT120I GGNCC 1 cut(s) 101
BmrI ACTGGG 1 cut(s) 35
BmsI GCATC 2 cut(s) 127, 151
BmuI ACTGGG 1 cut(s) 35
BsaI GGTCTC 1 cut(s) 288
Bse1I ACTGG 2 cut(s) 30, 283
Bse21I CCTNAGG 2 cut(s) 66, 237
Bse3DI GCAATG 1 cut(s) 56
BseGI GGATG 1 cut(s) 166
BseMI GCAATG 1 cut(s) 56
BseMII CTCAG 2 cut(s) 57, 228
BseNI ACTGG 2 cut(s) 30, 283
BseXI GCAGC 2 cut(s) 73, 79
BshFI GGCC 1 cut(s) 253
BsmAI GTCTC 3 cut(s) 40, 269, 288
BsnI GGCC 1 cut(s) 253
Bso31I GGTCTC 1 cut(s) 288
BspACI CCGC 1 cut(s) 164
BspANI GGCC 1 cut(s) 253
BspCNI CTCAG 2 cut(s) 58, 229
BspMI ACCTGC 1 cut(s) 297
BspTNI GGTCTC 1 cut(s) 288
BsrDI GCAATG 1 cut(s) 56
BsrI ACTGG 2 cut(s) 30, 283
BstC8I GCNNGC 1 cut(s) 142
BstDEI CTNAG 2 cut(s) 66, 237
BstF5I GGATG 1 cut(s) 166
BstMAI GTCTC 3 cut(s) 40, 269, 288
BstV1I GCAGC 2 cut(s) 73, 79
Bsu36I CCTNAGG 2 cut(s) 66, 237
BsuRI GGCC 1 cut(s) 253
BtsCI GGATG 1 cut(s) 166
BveI ACCTGC 1 cut(s) 297
Cac8I GCNNGC 1 cut(s) 142
Cfr13I GGNCC 1 cut(s) 101
Csp6I GTAC 2 cut(s) 132, 154
CviAII CATG 1 cut(s) 14
CviJI RGCY 6 cut(s) 22, 64, 85, 92, 235, 253
CviKI_1 RGCY 6 cut(s) 22, 64, 85, 92, 235, 253
CviQI GTAC 2 cut(s) 132, 154
DdeI CTNAG 2 cut(s) 66, 237
Eco31I GGTCTC 1 cut(s) 288
Eco47I GGWCC 1 cut(s) 101
Eco57I CTGAAG 1 cut(s) 276
Eco81I CCTNAGG 2 cut(s) 66, 237
FaeI CATG 1 cut(s) 17
FaiI YATR 3 cut(s) 15, 231, 291
FatI CATG 1 cut(s) 13
FblI GTMKAC 2 cut(s) 180, 224
Fnu4HI GCNGC 2 cut(s) 62, 93
FokI GGATG 1 cut(s) 173
Fsp4HI GCNGC 2 cut(s) 62, 93
GluI GCNGC 2 cut(s) 62, 93
HaeIII GGCC 1 cut(s) 253
Hin1II CATG 1 cut(s) 17
HincII GTYRAC 1 cut(s) 225
HindII GTYRAC 1 cut(s) 225
HinfI GANTC 2 cut(s) 4, 53
HphI GGTGA 2 cut(s) 82, 284
Hpy166II GTNNAC 2 cut(s) 181, 225
Hpy188III TCNNGA 1 cut(s) 8
Hpy8I GTNNAC 2 cut(s) 181, 225
HpyAV CCTTC 1 cut(s) 263
HpyCH4V TGCA 5 cut(s) 61, 95, 124, 263, 306
HpyF3I CTNAG 2 cut(s) 66, 237
Hsp92II CATG 1 cut(s) 17
LpnPI CCDG 6 cut(s) 11, 78, 249, 264, 267, 292
Lsp1109I GCAGC 2 cut(s) 73, 79
LweI GCATC 2 cut(s) 127, 151
MaeIII GTNAC 1 cut(s) 8
MboII GAAGA 2 cut(s) 202, 215
MfeI CAATTG 2 cut(s) 96, 264
MluCI AATT 3 cut(s) 96, 243, 264
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 4 cut(s) 61, 144, 213, 232
MslI CAYNNNNRTG 2 cut(s) 109, 214
MunI CAATTG 2 cut(s) 96, 264
NlaIII CATG 1 cut(s) 17
NmuCI GTSAC 1 cut(s) 8
OliI CACNNNNGTG 1 cut(s) 109
PfeI GAWTC 2 cut(s) 4, 53
PkrI GCNGC 2 cut(s) 63, 94
PsiI TTATAA 1 cut(s) 231
PspPI GGNCC 1 cut(s) 101
RsaI GTAC 2 cut(s) 133, 155
RsaNI GTAC 2 cut(s) 132, 154
RseI CAYNNNNRTG 2 cut(s) 109, 214
SalI GTCGAC 1 cut(s) 223
SatI GCNGC 2 cut(s) 62, 93
Sau96I GGNCC 1 cut(s) 101
SetI ASST 6 cut(s) 72, 87, 155, 224, 274, 311
SfaNI GCATC 2 cut(s) 127, 151
SinI GGWCC 1 cut(s) 101
SmiMI CAYNNNNRTG 2 cut(s) 109, 214
Sse9I AATT 3 cut(s) 96, 243, 264
SsiI CCGC 1 cut(s) 164
TaqI TCGA 2 cut(s) 188, 224
TasI AATT 3 cut(s) 96, 243, 264
TatI WGTACW 1 cut(s) 131
TfiI GAWTC 2 cut(s) 4, 53
TseFI GTSAC 1 cut(s) 8
TseI GCWGC 2 cut(s) 61, 92
Tsp45I GTSAC 1 cut(s) 8
TspDTI ATGAA 1 cut(s) 45
VpaK11BI GGWCC 1 cut(s) 101
XmiI GTMKAC 2 cut(s) 180, 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.