Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0007648

Physical Location & Seq

Genomic Coordinates Reverse (-)

1651647 .. 1653795

Gene Structure 2149 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1028100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGTTTCGCCTCTGGAGCACTTCTCATCAGCAAGAGGACGATCCCTTGAACCATGACGCTAAGATCAATGAGCTGAAGGCTGCGATTGGACCGCTATCTGGACGCAGTTTGCAGTTCTGCACTGATGCATGCTTCAGGCGGTACTTGGAGGCGCGAAATTGGAACCTTGGCAAGGCGAAGAAAATGTTGGAGGAAACACTCAAATGGAGGTCAACCTATAAGCCTGAGGAAATCCGCTGGCGCGAAGTTGCATGTGAAGGCGAGACCGGGAAAGTTTACAGAGCAAGTTTTCGCGATCGTAGTGGGAGGACTGTTCTTATACTGAGACCGGGAATGCAGAACACGGTATCAATAGACAATCAGATGCGGCATCTGGTGTATCTGATTGAGAATGCTGTGTTCAACCTTCCGGAGGGCCAAGAACAAATGGCGTGGCTGATAGACTTCACAGGGTGGACGCTAAGTGCTACCGTGCCTGTGAAATCGGCTCGAGACACCATCAACATTTTACAGAACCACTACCCTGAGAGACTAGCAGTAGCATTTCTCTACAATCCCCCACGCATTTTTGAAGCATTTTGGAAGATTGTCAAGTATTTCTTGGATAACAAGACATTCCACAAGGTTAAGTTCGTTTACCCGAAGAACAAAGATAGCGTGGAGCTTATGAAACAATATTTCGACGAGGAAAATCTCCCTATTGAGTTTGGAGGACCAGCCATACTAAACTATGATCACGAGGAATTCTCTAAACTAATGAATCAAGATGATGTGAAATCAGCTGCATTTTGGTGCCCCGATGACAAACCACCACATTGGGCTAATGGGCGTTCTGGAGCTGAGGTGGCTCCAGAGCCAGTGAGCCTTACACCAGCAGCCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

295

Amino Acids

34.1

Weight (kDa)

6.67

Isoelectric Point (pI)

53.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO_N	PF03765	37 - 65	6e-06	CRAL/TRIO, N-terminal domain
CRAL_TRIO	PF00650	89 - 238	1.1e-36	CRAL/TRIO domain
CRAL_TRIO_2	PF13716	120 - 247	2.9e-09	Divergent CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75170 AT1G75170 AT1G75170
fragaria_vesca	FvH4_2g39850 FvH4_2g39850
malus_domestica	MD08G1032100.v1.1 MD15G1028100.v1.1
prunus_persica	Prupe.1G379800_v2.0.a1 Prupe.1G379800_v2.0.a1 Prupe.1G379800_v2.0.a1
pyrus_communis	pycom08g02540 pycom15g02450
rosa_chinensis	RchiOBHm_Chr6g0300991
rosa_laevigata	RLG00000011287 RLG00000034667
rosa_multiflora	Rmu_co8375471.1_g000001 Rmu_sc0011701.1_g000029
rosa_roxburghii	Rroxscaffold_7G00167280
rosa_rugosa	Rorug06G0299800 Rorug06G0299800
rosa_samantha	Rh6AG413700 Rh6BG420600 Rh6CG428200 Rh6DG413600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	792
AccII	CGCG	3 cut(s)	154, 243, 294
AccIII	TCCGGA	1 cut(s)	409
AciI	CCGC	4 cut(s)	92, 139, 235, 367
AclWI	GGATC	1 cut(s)	35
AcsI	RAATTY	1 cut(s)	743
AcuI	CTGAAG	2 cut(s)	95, 118
AdeI	CACNNNGTG	1 cut(s)	453
AfaI	GTAC	1 cut(s)	143
AfiI	CCNNNNNNNGG	3 cut(s)	98, 172, 412
AgsI	TTSAA	3 cut(s)	49, 403, 572
AjuI	GAANNNNNNNTTGG	2 cut(s)	170, 202
AluBI	AGCT	5 cut(s)	73, 664, 782, 839, 882
AluI	AGCT	5 cut(s)	73, 664, 782, 839, 882
Alw21I	GWGCWC	1 cut(s)	20
Alw26I	GTCTC	4 cut(s)	257, 319, 486, 523
AlwI	GGATC	1 cut(s)	35
Ama87I	CYCGRG	1 cut(s)	489
Aor13HI	TCCGGA	1 cut(s)	409
AoxI	GGCC	1 cut(s)	415
ApeKI	GCWGC	3 cut(s)	80, 782, 875
ApoI	RAATTY	1 cut(s)	743
AspLEI	GCGC	2 cut(s)	154, 243
AspS9I	GGNCC	3 cut(s)	89, 415, 713
AsuC2I	CCSGG	2 cut(s)	268, 330
AvaI	CYCGRG	1 cut(s)	489
AvaII	GGWCC	2 cut(s)	89, 713
AxyI	CCTNAGG	1 cut(s)	225
BaeGI	GKGCMC	1 cut(s)	797
BanI	GGYRCC	1 cut(s)	792
BauI	CACGAG	1 cut(s)	737
Bbv12I	GWGCWC	1 cut(s)	20
BbvCI	CCTCAGC	1 cut(s)	840
BbvI	GCAGC	2 cut(s)	67, 769
BccI	CCATC	1 cut(s)	506
BclI	TGATCA	1 cut(s)	733
BcnI	CCSGG	2 cut(s)	268, 330
BcoDI	GTCTC	4 cut(s)	257, 319, 486, 523
BfaI	CTAG	1 cut(s)	533
BisI	GCNGC	4 cut(s)	81, 368, 783, 876
BlsI	GCNGC	4 cut(s)	82, 369, 784, 877
Bme1390I	CCNGG	2 cut(s)	268, 330
Bme18I	GGWCC	2 cut(s)	89, 713
BmeT110I	CYCGRG	1 cut(s)	489
BmgT120I	GGNCC	3 cut(s)	89, 415, 713
BmiI	GGNNCC	3 cut(s)	164, 794, 849
BmrFI	CCNGG	2 cut(s)	268, 330
BmsI	GCATC	3 cut(s)	115, 354, 379
BplI	GAGNNNNNCTC	4 cut(s)	7, 39, 731, 763
BpmI	CTGGAG	3 cut(s)	34, 834, 855
Bpu10I	CCTNAGC	1 cut(s)	840
BpuMI	CCSGG	2 cut(s)	268, 330
BsaI	GGTCTC	2 cut(s)	257, 319
BsaJI	CCNNGG	1 cut(s)	166
BsaWI	WCCGGW	1 cut(s)	409
BsaXI	ACNNNNNCTCC	2 cut(s)	828, 858
Bsc4I	CCNNNNNNNGG	3 cut(s)	98, 172, 412
Bse1I	ACTGG	1 cut(s)	857
Bse21I	CCTNAGG	1 cut(s)	225
BseAI	TCCGGA	1 cut(s)	409
BseDI	CCNNGG	1 cut(s)	166
BseLI	CCNNNNNNNGG	3 cut(s)	98, 172, 412
BseMII	CTCAG	4 cut(s)	216, 314, 516, 831
BseNI	ACTGG	1 cut(s)	857
BseSI	GKGCMC	1 cut(s)	797
BseXI	GCAGC	2 cut(s)	67, 769
BsgI	GTGCAG	1 cut(s)	103
Bsh1236I	CGCG	3 cut(s)	154, 243, 294
Bsh1285I	CGRYCG	1 cut(s)	298
BshFI	GGCC	1 cut(s)	417
BshNI	GGYRCC	1 cut(s)	792
BsiEI	CGRYCG	1 cut(s)	298
BsiHKAI	GWGCWC	1 cut(s)	20
BsiHKCI	CYCGRG	1 cut(s)	489
BsiSI	CCGG	3 cut(s)	267, 329, 410
BslI	CCNNNNNNNGG	3 cut(s)	98, 172, 412
BsmAI	GTCTC	4 cut(s)	257, 319, 486, 523
BsmI	GAATGC	2 cut(s)	339, 397
BsnI	GGCC	1 cut(s)	417
Bso31I	GGTCTC	2 cut(s)	257, 319
BsoBI	CYCGRG	1 cut(s)	489
Bsp1286I	GDGCHC	2 cut(s)	20, 797
Bsp13I	TCCGGA	1 cut(s)	409
Bsp143I	GATC	4 cut(s)	40, 63, 295, 733
Bsp68I	TCGCGA	1 cut(s)	294
BspACI	CCGC	4 cut(s)	92, 139, 235, 367
BspANI	GGCC	1 cut(s)	417
BspCNI	CTCAG	4 cut(s)	217, 315, 517, 832
BspEI	TCCGGA	1 cut(s)	409
BspFNI	CGCG	3 cut(s)	154, 243, 294
BspLI	GGNNCC	3 cut(s)	164, 794, 849
BspPI	GGATC	1 cut(s)	35
BspT107I	GGYRCC	1 cut(s)	792
BspTNI	GGTCTC	2 cut(s)	257, 319
BsrI	ACTGG	1 cut(s)	857
BssECI	CCNNGG	1 cut(s)	166
BssMI	GATC	4 cut(s)	40, 63, 295, 733
BssSI	CACGAG	1 cut(s)	737
BssT1I	CCWWGG	1 cut(s)	166
Bst2BI	CACGAG	1 cut(s)	737
Bst4CI	ACNGT	3 cut(s)	313, 346, 472
BstC8I	GCNNGC	3 cut(s)	130, 239, 880
BstDEI	CTNAG	6 cut(s)	60, 225, 323, 461, 525, 840
BstENI	CCTNNNNNAGG	2 cut(s)	170, 410
BstFNI	CGCG	3 cut(s)	154, 243, 294
BstHHI	GCGC	2 cut(s)	154, 243
BstKTI	GATC	4 cut(s)	43, 66, 298, 736
BstMAI	GTCTC	4 cut(s)	257, 319, 486, 523
BstMBI	GATC	4 cut(s)	40, 63, 295, 733
BstMCI	CGRYCG	1 cut(s)	298
BstMWI	GCNNNNNNNGC	2 cut(s)	15, 845
BstNSI	RCATGY	2 cut(s)	132, 255
BstSCI	CCNGG	2 cut(s)	266, 328
BstSLI	GKGCMC	1 cut(s)	797
BstUI	CGCG	3 cut(s)	154, 243, 294
BstV1I	GCAGC	2 cut(s)	67, 769
BstXI	CCANNNNNNTGG	1 cut(s)	816
Bsu36I	CCTNAGG	1 cut(s)	225
BsuRI	GGCC	1 cut(s)	417
BtsIMutI	CAGTG	2 cut(s)	120, 864
BtuMI	TCGCGA	1 cut(s)	294
Cac8I	GCNNGC	3 cut(s)	130, 239, 880
CfoI	GCGC	2 cut(s)	154, 243
Cfr13I	GGNCC	3 cut(s)	89, 415, 713
CseI	GACGC	3 cut(s)	65, 111, 466
Csp6I	GTAC	1 cut(s)	142
CspCI	CAANNNNNGTGG	2 cut(s)	413, 448
CviAII	CATG	3 cut(s)	53, 129, 252
CviQI	GTAC	1 cut(s)	142
DdeI	CTNAG	6 cut(s)	60, 225, 323, 461, 525, 840
DpnI	GATC	4 cut(s)	42, 65, 297, 735
DpnII	GATC	4 cut(s)	40, 63, 295, 733
DraIII	CACNNNGTG	1 cut(s)	453
Eco130I	CCWWGG	1 cut(s)	166
Eco31I	GGTCTC	2 cut(s)	257, 319
Eco47I	GGWCC	2 cut(s)	89, 713
Eco57I	CTGAAG	2 cut(s)	95, 118
Eco81I	CCTNAGG	1 cut(s)	225
Eco88I	CYCGRG	1 cut(s)	489
EcoNI	CCTNNNNNAGG	2 cut(s)	170, 410
EcoRI	GAATTC	1 cut(s)	743
EcoT14I	CCWWGG	1 cut(s)	166
EcoT22I	ATGCAT	1 cut(s)	130
ErhI	CCWWGG	1 cut(s)	166
FaeI	CATG	3 cut(s)	56, 132, 255
FaiI	YATR	8 cut(s)	54, 130, 219, 253, 320, 668, 722, 732
FalI	AAGNNNNNCTT	2 cut(s)	584, 616
FatI	CATG	3 cut(s)	52, 128, 251
FbaI	TGATCA	1 cut(s)	733
Fnu4HI	GCNGC	4 cut(s)	81, 368, 783, 876
Fsp4HI	GCNGC	4 cut(s)	81, 368, 783, 876
FspBI	CTAG	1 cut(s)	533
GlaI	GCGC	2 cut(s)	153, 242
GluI	GCNGC	4 cut(s)	81, 368, 783, 876
GsuI	CTGGAG	3 cut(s)	34, 834, 855
HaeIII	GGCC	1 cut(s)	417
HapII	CCGG	3 cut(s)	267, 329, 410
HgaI	GACGC	3 cut(s)	65, 111, 466
HhaI	GCGC	2 cut(s)	154, 243
Hin1II	CATG	3 cut(s)	56, 132, 255
Hin6I	GCGC	2 cut(s)	152, 241
HinP1I	GCGC	2 cut(s)	152, 241
HincII	GTYRAC	1 cut(s)	213
HindII	GTYRAC	1 cut(s)	213
HinfI	GANTC	1 cut(s)	760
HpaII	CCGG	3 cut(s)	267, 329, 410
Hpy166II	GTNNAC	4 cut(s)	213, 277, 456, 637
Hpy188I	TCNGA	2 cut(s)	363, 384
Hpy188III	TCNNGA	9 cut(s)	13, 99, 293, 410, 491, 737, 764, 834, 851
Hpy8I	GTNNAC	4 cut(s)	213, 277, 456, 637
Hpy99I	CGWCG	1 cut(s)	686
HpyAV	CCTTC	3 cut(s)	70, 251, 416
HpyCH4III	ACNGT	3 cut(s)	313, 346, 472
HpyCH4V	TGCA	6 cut(s)	112, 120, 128, 251, 337, 785
HpyF10VI	GCNNNNNNNGC	2 cut(s)	15, 845
HpyF3I	CTNAG	6 cut(s)	60, 225, 323, 461, 525, 840
Hsp92II	CATG	3 cut(s)	56, 132, 255
HspAI	GCGC	2 cut(s)	152, 241
Kpn2I	TCCGGA	1 cut(s)	409
Ksp22I	TGATCA	1 cut(s)	733
Kzo9I	GATC	4 cut(s)	40, 63, 295, 733
LmnI	GCTCC	4 cut(s)	15, 661, 836, 853
Lsp1109I	GCAGC	2 cut(s)	67, 769
LweI	GCATC	3 cut(s)	115, 354, 379
MaeI	CTAG	1 cut(s)	533
MalI	GATC	4 cut(s)	42, 65, 297, 735
MboI	GATC	4 cut(s)	40, 63, 295, 733
MboII	GAAGA	3 cut(s)	190, 595, 655
MhlI	GDGCHC	2 cut(s)	20, 797
MluCI	AATT	2 cut(s)	157, 743
MmeI	TCCRAC	1 cut(s)	168
Mph1103I	ATGCAT	1 cut(s)	130
MroI	TCCGGA	1 cut(s)	409
MseI	TTAA	1 cut(s)	627
MslI	CAYNNNNRTG	2 cut(s)	202, 790
MspA1I	CMGCKG	3 cut(s)	237, 782, 882
MspI	CCGG	3 cut(s)	267, 329, 410
MspR9I	CCNGG	2 cut(s)	268, 330
Mva1269I	GAATGC	2 cut(s)	339, 397
MvnI	CGCG	3 cut(s)	154, 243, 294
MwoI	GCNNNNNNNGC	2 cut(s)	15, 845
NciI	CCSGG	2 cut(s)	268, 330
NdeII	GATC	4 cut(s)	40, 63, 295, 733
NlaIII	CATG	3 cut(s)	56, 132, 255
NlaIV	GGNNCC	3 cut(s)	164, 794, 849
NruI	TCGCGA	1 cut(s)	294
NsiI	ATGCAT	1 cut(s)	130
NspI	RCATGY	2 cut(s)	132, 255
PaeI	GCATGC	1 cut(s)	132
PaeR7I	CTCGAG	1 cut(s)	489
PctI	GAATGC	2 cut(s)	339, 397
PfeI	GAWTC	1 cut(s)	760
PkrI	GCNGC	4 cut(s)	82, 369, 784, 877
Ple19I	CGATCG	1 cut(s)	298
PspN4I	GGNNCC	3 cut(s)	164, 794, 849
PspPI	GGNCC	3 cut(s)	89, 415, 713
PvuI	CGATCG	1 cut(s)	298
PvuII	CAGCTG	2 cut(s)	782, 882
RruI	TCGCGA	1 cut(s)	294
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
RseI	CAYNNNNRTG	2 cut(s)	202, 790
SaqAI	TTAA	1 cut(s)	627
SatI	GCNGC	4 cut(s)	81, 368, 783, 876
Sau3AI	GATC	4 cut(s)	40, 63, 295, 733
Sau96I	GGNCC	3 cut(s)	89, 415, 713
ScrFI	CCNGG	2 cut(s)	268, 330
SduI	GDGCHC	2 cut(s)	20, 797
SfaNI	GCATC	3 cut(s)	115, 354, 379
Sfr274I	CTCGAG	1 cut(s)	489
SinI	GGWCC	2 cut(s)	89, 713
SlaI	CTCGAG	1 cut(s)	489
SmiMI	CAYNNNNRTG	2 cut(s)	202, 790
SmlI	CTYRAG	1 cut(s)	489
SmoI	CTYRAG	1 cut(s)	489
SphI	GCATGC	1 cut(s)	132
Sse9I	AATT	2 cut(s)	157, 743
SsiI	CCGC	4 cut(s)	92, 139, 235, 367
SspI	AATATT	1 cut(s)	677
SspMI	CTAG	1 cut(s)	533
StyD4I	CCNGG	2 cut(s)	266, 328
StyI	CCWWGG	1 cut(s)	166
TaaI	ACNGT	3 cut(s)	313, 346, 472
TaqI	TCGA	2 cut(s)	490, 681
TasI	AATT	2 cut(s)	157, 743
TauI	GCSGC	1 cut(s)	370
TfiI	GAWTC	1 cut(s)	760
Tru1I	TTAA	1 cut(s)	627
Tru9I	TTAA	1 cut(s)	627
TscAI	CASTG	2 cut(s)	127, 864
TseI	GCWGC	3 cut(s)	80, 782, 875
TspDTI	ATGAA	2 cut(s)	683, 773
TspRI	CASTG	2 cut(s)	127, 864
VpaK11BI	GGWCC	2 cut(s)	89, 713
XagI	CCTNNNNNAGG	2 cut(s)	170, 410
XapI	RAATTY	1 cut(s)	743
XceI	RCATGY	2 cut(s)	132, 255
XhoI	CTCGAG	1 cut(s)	489
XspI	CTAG	1 cut(s)	533
Zsp2I	ATGCAT	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.