Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0007648

Physical Location & Seq

Genomic Coordinates Reverse (-)

28502408 .. 28505212

Gene Structure 2805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g39850.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGTTTGGCATTTGGGGAAAGTCTCATCATCACGAGAATGATTCACTGCAGCCTGAAGTGAAGATCAACGAGCTAAAGGCTGCGATTGGGCCACTATCGGGCCGAAGTATGCAGTTCTGTACTGATGCGTGCTTCAGGAGGTACTTGGATGCAAGGAATGGGAATGTAGACAAGTCGAAGAAAATGTTGGAGGAAACTCTCAAGTGGAGGTCAAGTTATAAGCCTGAGGAAATCAGTTGGCCTGAAGTTGCAGTTGAAGGCGAGACTGGAAAAGTTTATAGAGCAAGTTTTCATGACCGTCATGGGAGGAGTGTTTTGATATTGAGACCAGCAATGCAGAACACAACGTCATTAGACAATAACATCAAGCACTTGGTGTATCTTATAGAGAATGCTGTCTTTAACCTTCCAGAGGGTCAAGAACAAATGGCCTGGTTGATAGACTTTACCGGGTGGACCCTGAATACTTCTGTGCCTGTCAAATCAGCACGGGATACCATCAATATTTTACAGAACCACTATCCTGAAAGGCTAGCCGTGGCATTTCTCTACAACCCTCCGCGAATTTTTGAAGCATTTTGGAAGATTGTCAAGTACTTCTTGGATACCAAGACATTCCACAAAGTTAAGTTTGTTTACCCGAAGAAGAAAGACAGTGTGGAGCTTATGAAACAATATTTTGATGAGGAAAATCTCCCTACTGAGTTTGGAGGAAAAGCCATACTAGAGTATAACCATGAGGAGTTCTCGAAATTAATGACCCAAGATGATGTGAAATCTGCTGCCTTTTGGGGCCGTGATAACAAGATACATCATGCTACCAATGGCCATTCTGGAGCTGAGGTAGCTCCTGAACCAGCGTGCGTTGCGCCAGTAGCTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

295

Amino Acids

33.78

Weight (kDa)

6.87

Isoelectric Point (pI)

45.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO	PF00650	89 - 238	8.8e-36	CRAL/TRIO domain
CRAL_TRIO_2	PF13716	102 - 247	7.7e-10	Divergent CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75170 AT1G75170 AT1G75170
fragaria_vesca	FvH4_2g39850 FvH4_2g39850
malus_domestica	MD08G1032100.v1.1 MD15G1028100.v1.1
prunus_persica	Prupe.1G379800_v2.0.a1 Prupe.1G379800_v2.0.a1 Prupe.1G379800_v2.0.a1
pyrus_communis	pycom08g02540 pycom15g02450
rosa_chinensis	RchiOBHm_Chr6g0300991
rosa_laevigata	RLG00000011287 RLG00000034667
rosa_multiflora	Rmu_co8375471.1_g000001 Rmu_sc0011701.1_g000029
rosa_roxburghii	Rroxscaffold_7G00167280
rosa_rugosa	Rorug06G0299800 Rorug06G0299800
rosa_samantha	Rh6AG413700 Rh6BG420600 Rh6CG428200 Rh6DG413600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	219
AccI	GTMKAC	1 cut(s)	168
AccII	CGCG	1 cut(s)	562
AciI	CCGC	1 cut(s)	560
AcoI	YGGCCR	1 cut(s)	826
AcsI	RAATTY	1 cut(s)	564
AcuI	CTGAAG	3 cut(s)	75, 118, 264
AdeI	CACNNNGTG	1 cut(s)	376
AfaI	GTAC	3 cut(s)	121, 143, 596
AfiI	CCNNNNNNNGG	2 cut(s)	98, 412
AgsI	TTSAA	2 cut(s)	257, 572
AjnI	CCWGG	1 cut(s)	431
AjuI	GAANNNNNNNTTGG	2 cut(s)	170, 202
AluBI	AGCT	5 cut(s)	73, 664, 839, 848, 878
AluI	AGCT	5 cut(s)	73, 664, 839, 848, 878
Alw26I	GTCTC	3 cut(s)	27, 257, 319
AoxI	GGCC	6 cut(s)	89, 100, 239, 429, 793, 826
ApeKI	GCWGC	3 cut(s)	49, 80, 782
ApoI	RAATTY	1 cut(s)	564
AseI	ATTAAT	1 cut(s)	755
AspLEI	GCGC	1 cut(s)	871
AspS9I	GGNCC	4 cut(s)	89, 100, 456, 793
AsuC2I	CCSGG	1 cut(s)	451
AsuNHI	GCTAGC	1 cut(s)	532
AvaII	GGWCC	1 cut(s)	456
AxyI	CCTNAGG	1 cut(s)	225
BalI	TGGCCA	1 cut(s)	828
BauI	CACGAG	1 cut(s)	32
BbvCI	CCTCAGC	1 cut(s)	840
BbvI	GCAGC	3 cut(s)	61, 67, 769
BccI	CCATC	1 cut(s)	506
BceAI	ACGGC	2 cut(s)	521, 780
BciT130I	CCWGG	1 cut(s)	433
BciVI	GTATCC	2 cut(s)	487, 598
BcnI	CCSGG	1 cut(s)	451
BcoDI	GTCTC	3 cut(s)	27, 257, 319
BfaI	CTAG	3 cut(s)	533, 725, 879
BfmI	CTRYAG	1 cut(s)	47
BfuI	GTATCC	2 cut(s)	487, 598
BisI	GCNGC	3 cut(s)	50, 81, 783
BlsI	GCNGC	3 cut(s)	51, 82, 784
BmcAI	AGTACT	1 cut(s)	596
Bme1390I	CCNGG	2 cut(s)	433, 451
Bme18I	GGWCC	1 cut(s)	456
BmgT120I	GGNCC	4 cut(s)	89, 100, 456, 793
BmiI	GGNNCC	2 cut(s)	458, 794
BmrFI	CCNGG	2 cut(s)	433, 451
BmsI	GCATC	2 cut(s)	115, 139
BmtI	GCTAGC	1 cut(s)	536
BplI	GAGNNNNNCTC	2 cut(s)	731, 763
BpmI	CTGGAG	1 cut(s)	855
Bpu10I	CCTNAGC	1 cut(s)	840
BpuEI	CTTGAG	1 cut(s)	185
BpuMI	CCSGG	1 cut(s)	451
BsaI	GGTCTC	1 cut(s)	319
BsaJI	CCNNGG	1 cut(s)	537
BsaXI	ACNNNNNCTCC	4 cut(s)	199, 229, 828, 858
Bsc4I	CCNNNNNNNGG	2 cut(s)	98, 412
Bse1I	ACTGG	2 cut(s)	271, 872
Bse21I	CCTNAGG	1 cut(s)	225
Bse3DI	GCAATG	1 cut(s)	339
BseBI	CCWGG	1 cut(s)	433
BseDI	CCNNGG	1 cut(s)	537
BseGI	GGATG	1 cut(s)	154
BseLI	CCNNNNNNNGG	2 cut(s)	98, 412
BseMI	GCAATG	1 cut(s)	339
BseMII	CTCAG	3 cut(s)	216, 693, 831
BseNI	ACTGG	2 cut(s)	271, 872
BseRI	GAGGAG	2 cut(s)	322, 755
BseXI	GCAGC	3 cut(s)	61, 67, 769
Bsh1236I	CGCG	1 cut(s)	562
BshFI	GGCC	6 cut(s)	91, 102, 241, 431, 795, 828
BsiSI	CCGG	1 cut(s)	450
BslI	CCNNNNNNNGG	2 cut(s)	98, 412
BsmAI	GTCTC	3 cut(s)	27, 257, 319
BsmI	GAATGC	1 cut(s)	397
BsnI	GGCC	6 cut(s)	91, 102, 241, 431, 795, 828
Bso31I	GGTCTC	1 cut(s)	319
Bsp143I	GATC	1 cut(s)	63
BspACI	CCGC	1 cut(s)	560
BspANI	GGCC	6 cut(s)	91, 102, 241, 431, 795, 828
BspCNI	CTCAG	3 cut(s)	217, 694, 832
BspFNI	CGCG	1 cut(s)	562
BspHI	TCATGA	1 cut(s)	292
BspLI	GGNNCC	2 cut(s)	458, 794
BspMAI	CTGCAG	1 cut(s)	51
BspOI	GCTAGC	1 cut(s)	536
BspTNI	GGTCTC	1 cut(s)	319
BsrDI	GCAATG	1 cut(s)	339
BsrI	ACTGG	2 cut(s)	271, 872
BssECI	CCNNGG	1 cut(s)	537
BssMI	GATC	1 cut(s)	63
BssSI	CACGAG	1 cut(s)	32
Bst2BI	CACGAG	1 cut(s)	32
Bst2UI	CCWGG	1 cut(s)	433
Bst4CI	ACNGT	2 cut(s)	299, 656
BstC8I	GCNNGC	3 cut(s)	130, 534, 862
BstDEI	CTNAG	3 cut(s)	225, 702, 840
BstDSI	CCRYGG	1 cut(s)	537
BstENI	CCTNNNNNAGG	1 cut(s)	410
BstF5I	GGATG	1 cut(s)	154
BstFNI	CGCG	1 cut(s)	562
BstHHI	GCGC	1 cut(s)	871
BstKTI	GATC	1 cut(s)	66
BstMAI	GTCTC	3 cut(s)	27, 257, 319
BstMBI	GATC	1 cut(s)	63
BstMWI	GCNNNNNNNGC	3 cut(s)	845, 866, 875
BstNI	CCWGG	1 cut(s)	433
BstSCI	CCNGG	2 cut(s)	431, 449
BstSFI	CTRYAG	1 cut(s)	47
BstUI	CGCG	1 cut(s)	562
BstV1I	GCAGC	3 cut(s)	61, 67, 769
Bsu36I	CCTNAGG	1 cut(s)	225
BsuI	GTATCC	2 cut(s)	487, 598
BsuRI	GGCC	6 cut(s)	91, 102, 241, 431, 795, 828
BtgI	CCRYGG	1 cut(s)	537
BtsCI	GGATG	1 cut(s)	154
BtsI	GCAGTG	1 cut(s)	44
BtsIMutI	CAGTG	2 cut(s)	44, 661
Cac8I	GCNNGC	3 cut(s)	130, 534, 862
CciI	TCATGA	1 cut(s)	292
CfoI	GCGC	1 cut(s)	871
Cfr13I	GGNCC	4 cut(s)	89, 100, 456, 793
Csp6I	GTAC	3 cut(s)	120, 142, 595
CviAII	CATG	4 cut(s)	293, 302, 737, 815
CviQI	GTAC	3 cut(s)	120, 142, 595
DdeI	CTNAG	3 cut(s)	225, 702, 840
DpnI	GATC	1 cut(s)	65
DpnII	GATC	1 cut(s)	63
DraIII	CACNNNGTG	1 cut(s)	376
EaeI	YGGCCR	1 cut(s)	826
Eco31I	GGTCTC	1 cut(s)	319
Eco47I	GGWCC	1 cut(s)	456
Eco57I	CTGAAG	3 cut(s)	75, 118, 264
Eco81I	CCTNAGG	1 cut(s)	225
EcoNI	CCTNNNNNAGG	1 cut(s)	410
EcoRII	CCWGG	1 cut(s)	431
FaeI	CATG	4 cut(s)	296, 305, 740, 818
FalI	AAGNNNNNCTT	2 cut(s)	584, 616
FatI	CATG	4 cut(s)	292, 301, 736, 814
FblI	GTMKAC	1 cut(s)	168
Fnu4HI	GCNGC	3 cut(s)	50, 81, 783
FokI	GGATG	1 cut(s)	161
Fsp4HI	GCNGC	3 cut(s)	50, 81, 783
FspBI	CTAG	3 cut(s)	533, 725, 879
GlaI	GCGC	1 cut(s)	870
GluI	GCNGC	3 cut(s)	50, 81, 783
GsuI	CTGGAG	1 cut(s)	855
HaeIII	GGCC	6 cut(s)	91, 102, 241, 431, 795, 828
HapII	CCGG	1 cut(s)	450
HhaI	GCGC	1 cut(s)	871
Hin1II	CATG	4 cut(s)	296, 305, 740, 818
Hin6I	GCGC	1 cut(s)	869
HinP1I	GCGC	1 cut(s)	869
HinfI	GANTC	1 cut(s)	41
HpaII	CCGG	1 cut(s)	450
Hpy166II	GTNNAC	3 cut(s)	169, 456, 637
Hpy188III	TCNNGA	9 cut(s)	32, 136, 293, 410, 419, 524, 748, 834, 851
Hpy8I	GTNNAC	3 cut(s)	169, 456, 637
HpyAV	CCTTC	2 cut(s)	251, 416
HpyCH4III	ACNGT	2 cut(s)	299, 656
HpyCH4IV	ACGT	1 cut(s)	347
HpyCH4V	TGCA	5 cut(s)	49, 112, 152, 251, 337
HpyF10VI	GCNNNNNNNGC	3 cut(s)	845, 866, 875
HpyF3I	CTNAG	3 cut(s)	225, 702, 840
HpySE526I	ACGT	1 cut(s)	347
Hsp92II	CATG	4 cut(s)	296, 305, 740, 818
HspAI	GCGC	1 cut(s)	869
Kzo9I	GATC	1 cut(s)	63
LmnI	GCTCC	3 cut(s)	661, 836, 853
Lsp1109I	GCAGC	3 cut(s)	61, 67, 769
LweI	GCATC	2 cut(s)	115, 139
MaeI	CTAG	3 cut(s)	533, 725, 879
MaeII	ACGT	1 cut(s)	347
MalI	GATC	1 cut(s)	65
MboI	GATC	1 cut(s)	63
MboII	GAAGA	5 cut(s)	73, 190, 595, 655, 658
MlsI	TGGCCA	1 cut(s)	828
MluCI	AATT	2 cut(s)	564, 752
MluNI	TGGCCA	1 cut(s)	828
MmeI	TCCRAC	1 cut(s)	168
Mox20I	TGGCCA	1 cut(s)	828
MscI	TGGCCA	1 cut(s)	828
MseI	TTAA	3 cut(s)	402, 627, 755
MslI	CAYNNNNRTG	1 cut(s)	36
Msp20I	TGGCCA	1 cut(s)	828
MspI	CCGG	1 cut(s)	450
MspR9I	CCNGG	2 cut(s)	433, 451
Mva1269I	GAATGC	1 cut(s)	397
MvaI	CCWGG	1 cut(s)	433
MvnI	CGCG	1 cut(s)	562
MwoI	GCNNNNNNNGC	3 cut(s)	845, 866, 875
NciI	CCSGG	1 cut(s)	451
NdeII	GATC	1 cut(s)	63
NheI	GCTAGC	1 cut(s)	532
NlaIII	CATG	4 cut(s)	296, 305, 740, 818
NlaIV	GGNNCC	2 cut(s)	458, 794
PagI	TCATGA	1 cut(s)	292
PctI	GAATGC	1 cut(s)	397
PfeI	GAWTC	1 cut(s)	41
PkrI	GCNGC	3 cut(s)	51, 82, 784
PshBI	ATTAAT	1 cut(s)	755
PsiI	TTATAA	1 cut(s)	219
Psp6I	CCWGG	1 cut(s)	431
PspGI	CCWGG	1 cut(s)	431
PspN4I	GGNNCC	2 cut(s)	458, 794
PspPI	GGNCC	4 cut(s)	89, 100, 456, 793
PstI	CTGCAG	1 cut(s)	51
RsaI	GTAC	3 cut(s)	121, 143, 596
RsaNI	GTAC	3 cut(s)	120, 142, 595
RseI	CAYNNNNRTG	1 cut(s)	36
SaqAI	TTAA	3 cut(s)	402, 627, 755
SatI	GCNGC	3 cut(s)	50, 81, 783
Sau3AI	GATC	1 cut(s)	63
Sau96I	GGNCC	4 cut(s)	89, 100, 456, 793
ScaI	AGTACT	1 cut(s)	596
ScrFI	CCNGG	2 cut(s)	433, 451
SfaNI	GCATC	2 cut(s)	115, 139
SfcI	CTRYAG	1 cut(s)	47
SinI	GGWCC	1 cut(s)	456
SmiMI	CAYNNNNRTG	1 cut(s)	36
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
Sse9I	AATT	2 cut(s)	564, 752
SsiI	CCGC	1 cut(s)	560
SspI	AATATT	2 cut(s)	505, 677
SspMI	CTAG	3 cut(s)	533, 725, 879
StyD4I	CCNGG	2 cut(s)	431, 449
TaaI	ACNGT	2 cut(s)	299, 656
TaiI	ACGT	1 cut(s)	350
TaqI	TCGA	2 cut(s)	176, 749
TasI	AATT	2 cut(s)	564, 752
TatI	WGTACW	2 cut(s)	119, 594
TfiI	GAWTC	1 cut(s)	41
Tru1I	TTAA	3 cut(s)	402, 627, 755
Tru9I	TTAA	3 cut(s)	402, 627, 755
TscAI	CASTG	2 cut(s)	51, 661
TseI	GCWGC	3 cut(s)	49, 80, 782
TspDTI	ATGAA	2 cut(s)	281, 683
TspRI	CASTG	2 cut(s)	51, 661
VpaK11BI	GGWCC	1 cut(s)	456
VspI	ATTAAT	1 cut(s)	755
XagI	CCTNNNNNAGG	1 cut(s)	410
XapI	RAATTY	1 cut(s)	564
XmiI	GTMKAC	1 cut(s)	168
XspI	CTAG	3 cut(s)	533, 725, 879
ZrmI	AGTACT	1 cut(s)	596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.