Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012232

Physical Location & Seq

Genomic Coordinates Reverse (-)

28522554 .. 28524418

Gene Structure 1865 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G75980.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGAGATTCTGAAGCTTGATGTAGCGAAGTTTCCAGAAATTGAGGATACAATCGAATTAACTAACCCAAAGAGAAACGACGAAGTAGAAGATTGCGACGACCAACAGAAGCAGCAGCTAGCTACACAAGAAGATGAAGAGGAAGACGAATTGAGAAAGCTTCTGCTTTCAGATATTGGAGAACTTCCGATTTCTCCTCCTTCAGCTACACAAGTCAATTTTGTTTCTTACTTCATCACAGATTTTACTAAATCGGGTCATGATCAATATATTTACCGTCACGCTAATGGTTTGTGTGTAATTGGATTGGCTCCTACGCATATAGCTTTTAAGGATGAAGGTGGAATCACTAGTGTCGATTTCAATGTTGGTAAGTCTGATCGTAGCGTCTTGAAAGTCTCCGGCAAGCGTAAAAAGAATGCGTTGCGCTCTGAATCGAATACAGCATTGTGCAAAGTTTCCACTGCAAAAGATACTTACATTGTTAGGTGCTGCGTTAAAGGCTCTCTCTTGGAGGTCAACGAGAGATTGATTAAGCAACCAGAGCTTCTTAATTCAACGGCTGACCGCGAAGGGTATATTGCGATAATTATGCCAAGACCTGCAGATTGGACCAAAAACAAGGAGTCACTGATAACTCTGGAGGAATATAAAGAAAAGAAAGAAATGTCTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GCV_H

Protein Analysis

225

Amino Acids

25.43

Weight (kDa)

5.04

Isoelectric Point (pI)

43.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75980 AT1G75980
fragaria_vesca	FvH4_3g18360
malus_domestica	MD03G1242500.v1.1
prunus_persica	Prupe.4G165400_v2.0.a1
pyrus_communis	pycom11g23170
rosa_chinensis	RchiOBHm_Chr5g0031011
rosa_laevigata	RLG00000033280
rosa_multiflora	Rmu_sc0001523.1_g000003
rosa_roxburghii	Rroxscaffold_1G00049220 Rroxscaffold_1G00071310
rosa_rugosa	Rorug05G0122300
rosa_samantha	Rh4DG170500 Rh5BG214600 Rh5CG238400 Rh5DG219100
rosa_wichuraiana	Rw3G027050 Rw5G019710 Rw6G016970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	610
AccII	CGCG	1 cut(s)	570
AciI	CCGC	1 cut(s)	568
AcuI	CTGAAG	2 cut(s)	32, 186
AgsI	TTSAA	3 cut(s)	364, 394, 558
AhlI	ACTAGT	1 cut(s)	350
AluBI	AGCT	7 cut(s)	16, 118, 122, 160, 206, 326, 547
AluI	AGCT	7 cut(s)	16, 118, 122, 160, 206, 326, 547
Alw26I	GTCTC	1 cut(s)	403
ApeKI	GCWGC	3 cut(s)	112, 115, 492
AspLEI	GCGC	1 cut(s)	429
AspS9I	GGNCC	1 cut(s)	612
AsuNHI	GCTAGC	1 cut(s)	118
AvaII	GGWCC	1 cut(s)	612
BbsI	GAAGAC	1 cut(s)	150
BbvI	GCAGC	3 cut(s)	124, 127, 479
BceAI	ACGGC	1 cut(s)	576
BcgI	CGANNNNNNTGC	2 cut(s)	574, 608
BciVI	GTATCC	1 cut(s)	40
BclI	TGATCA	1 cut(s)	262
BcoDI	GTCTC	1 cut(s)	403
BcuI	ACTAGT	1 cut(s)	350
BfaI	CTAG	2 cut(s)	119, 351
BfmI	CTRYAG	1 cut(s)	603
BfuAI	ACCTGC	1 cut(s)	610
BfuI	GTATCC	1 cut(s)	40
BisI	GCNGC	3 cut(s)	113, 116, 493
BlsI	GCNGC	3 cut(s)	114, 117, 494
Bme18I	GGWCC	1 cut(s)	612
BmgT120I	GGNCC	1 cut(s)	612
BmiI	GGNNCC	1 cut(s)	312
BmtI	GCTAGC	1 cut(s)	122
BpiI	GAAGAC	1 cut(s)	150
BpmI	CTGGAG	1 cut(s)	662
BseGI	GGATG	1 cut(s)	340
BseRI	GAGGAG	1 cut(s)	186
BseXI	GCAGC	3 cut(s)	124, 127, 479
Bsh1236I	CGCG	1 cut(s)	570
BsiSI	CCGG	1 cut(s)	402
BsmAI	GTCTC	1 cut(s)	403
BsmI	GAATGC	1 cut(s)	424
Bsp143I	GATC	2 cut(s)	262, 379
BspACI	CCGC	1 cut(s)	568
BspFNI	CGCG	1 cut(s)	570
BspHI	TCATGA	1 cut(s)	259
BspLI	GGNNCC	1 cut(s)	312
BspMAI	CTGCAG	1 cut(s)	607
BspMI	ACCTGC	1 cut(s)	610
BspOI	GCTAGC	1 cut(s)	122
BssMI	GATC	2 cut(s)	262, 379
Bst4CI	ACNGT	1 cut(s)	278
Bst6I	CTCTTC	1 cut(s)	132
BstC8I	GCNNGC	2 cut(s)	120, 407
BstF5I	GGATG	1 cut(s)	340
BstFNI	CGCG	1 cut(s)	570
BstHHI	GCGC	1 cut(s)	429
BstKTI	GATC	2 cut(s)	265, 382
BstMAI	GTCTC	1 cut(s)	403
BstMBI	GATC	2 cut(s)	262, 379
BstMWI	GCNNNNNNNGC	2 cut(s)	501, 544
BstSFI	CTRYAG	1 cut(s)	603
BstUI	CGCG	1 cut(s)	570
BstV1I	GCAGC	3 cut(s)	124, 127, 479
BstV2I	GAAGAC	1 cut(s)	150
BsuI	GTATCC	1 cut(s)	40
BtsCI	GGATG	1 cut(s)	340
BtsI	GCAGTG	1 cut(s)	462
BtsIMutI	CAGTG	2 cut(s)	462, 629
BveI	ACCTGC	1 cut(s)	610
Cac8I	GCNNGC	2 cut(s)	120, 407
CciI	TCATGA	1 cut(s)	259
CfoI	GCGC	1 cut(s)	429
Cfr13I	GGNCC	1 cut(s)	612
CseI	GACGC	1 cut(s)	376
CviAII	CATG	1 cut(s)	260
DpnI	GATC	2 cut(s)	264, 381
DpnII	GATC	2 cut(s)	262, 379
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
Eco47I	GGWCC	1 cut(s)	612
Eco57I	CTGAAG	2 cut(s)	32, 186
FaeI	CATG	1 cut(s)	263
FaiI	YATR	8 cut(s)	261, 270, 321, 323, 579, 593, 651, 676
FatI	CATG	1 cut(s)	259
FbaI	TGATCA	1 cut(s)	262
Fnu4HI	GCNGC	3 cut(s)	113, 116, 493
FokI	GGATG	1 cut(s)	347
Fsp4HI	GCNGC	3 cut(s)	113, 116, 493
FspBI	CTAG	2 cut(s)	119, 351
GlaI	GCGC	1 cut(s)	428
GluI	GCNGC	3 cut(s)	113, 116, 493
GsuI	CTGGAG	1 cut(s)	662
HapII	CCGG	1 cut(s)	402
HgaI	GACGC	1 cut(s)	376
HhaI	GCGC	1 cut(s)	429
Hin1II	CATG	1 cut(s)	263
Hin6I	GCGC	1 cut(s)	427
HinP1I	GCGC	1 cut(s)	427
HincII	GTYRAC	1 cut(s)	520
HindII	GTYRAC	1 cut(s)	520
HindIII	AAGCTT	2 cut(s)	14, 158
HinfI	GANTC	4 cut(s)	7, 345, 434, 626
HpaII	CCGG	1 cut(s)	402
Hpy166II	GTNNAC	1 cut(s)	520
Hpy188I	TCNGA	5 cut(s)	12, 172, 189, 379, 433
Hpy188III	TCNNGA	4 cut(s)	35, 260, 391, 641
Hpy8I	GTNNAC	1 cut(s)	520
Hpy99I	CGWCG	2 cut(s)	83, 101
HpyAV	CCTTC	3 cut(s)	210, 332, 566
HpyCH4III	ACNGT	1 cut(s)	278
HpyCH4V	TGCA	3 cut(s)	453, 467, 605
HpyF10VI	GCNNNNNNNGC	2 cut(s)	501, 544
Hsp92II	CATG	1 cut(s)	263
HspAI	GCGC	1 cut(s)	427
Ksp22I	TGATCA	1 cut(s)	262
Kzo9I	GATC	2 cut(s)	262, 379
LmnI	GCTCC	1 cut(s)	316
LpnPI	CCDG	5 cut(s)	48, 415, 555, 615, 626
Lsp1109I	GCAGC	3 cut(s)	124, 127, 479
MaeI	CTAG	2 cut(s)	119, 351
MaeIII	GTNAC	2 cut(s)	278, 627
MalI	GATC	2 cut(s)	264, 381
MboI	GATC	2 cut(s)	262, 379
MboII	GAAGA	4 cut(s)	101, 143, 149, 155
MluCI	AATT	7 cut(s)	39, 56, 149, 217, 300, 553, 588
MlyI	GAGTC	1 cut(s)	635
MnlI	CCTC	5 cut(s)	37, 133, 207, 508, 637
MseI	TTAA	5 cut(s)	59, 330, 498, 534, 552
MslI	CAYNNNNRTG	1 cut(s)	285
MspI	CCGG	1 cut(s)	402
Mva1269I	GAATGC	1 cut(s)	424
MvnI	CGCG	1 cut(s)	570
MwoI	GCNNNNNNNGC	2 cut(s)	501, 544
NdeII	GATC	2 cut(s)	262, 379
NheI	GCTAGC	1 cut(s)	118
NlaIII	CATG	1 cut(s)	263
NlaIV	GGNNCC	1 cut(s)	312
NmuCI	GTSAC	2 cut(s)	278, 627
PagI	TCATGA	1 cut(s)	259
PctI	GAATGC	1 cut(s)	424
PfeI	GAWTC	3 cut(s)	7, 345, 434
PkrI	GCNGC	3 cut(s)	114, 117, 494
PleI	GAGTC	1 cut(s)	634
PpsI	GAGTC	1 cut(s)	634
PspN4I	GGNNCC	1 cut(s)	312
PspPI	GGNCC	1 cut(s)	612
PstI	CTGCAG	1 cut(s)	607
RseI	CAYNNNNRTG	1 cut(s)	285
SaqAI	TTAA	5 cut(s)	59, 330, 498, 534, 552
SatI	GCNGC	3 cut(s)	113, 116, 493
Sau3AI	GATC	2 cut(s)	262, 379
Sau96I	GGNCC	1 cut(s)	612
SchI	GAGTC	1 cut(s)	635
SfcI	CTRYAG	1 cut(s)	603
SinI	GGWCC	1 cut(s)	612
SmiMI	CAYNNNNRTG	1 cut(s)	285
SpeI	ACTAGT	1 cut(s)	350
Sse9I	AATT	7 cut(s)	39, 56, 149, 217, 300, 553, 588
SsiI	CCGC	1 cut(s)	568
SspMI	CTAG	2 cut(s)	119, 351
TaaI	ACNGT	1 cut(s)	278
TaqI	TCGA	3 cut(s)	54, 357, 437
TasI	AATT	7 cut(s)	39, 56, 149, 217, 300, 553, 588
TfiI	GAWTC	3 cut(s)	7, 345, 434
Tru1I	TTAA	5 cut(s)	59, 330, 498, 534, 552
Tru9I	TTAA	5 cut(s)	59, 330, 498, 534, 552
TscAI	CASTG	2 cut(s)	469, 636
TseFI	GTSAC	2 cut(s)	278, 627
TseI	GCWGC	3 cut(s)	112, 115, 492
Tsp45I	GTSAC	2 cut(s)	278, 627
TspDTI	ATGAA	3 cut(s)	150, 223, 351
TspRI	CASTG	2 cut(s)	469, 636
VpaK11BI	GGWCC	1 cut(s)	612
XspI	CTAG	2 cut(s)	119, 351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.