Rmu_sc0001523.1_g000003

mitochondrial gene expression

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001523.1
OG0012232
Physical Location & Seq
Reverse (-)
6960 .. 9631
2672 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001523.1_g000003.1.cds

Sequence Viewer

Length: 771 bp
atggggatggagatcaaaatatcatccccaccccgtacccgatttcagaattctaatattggggatccccatccccgttacccgatttcccccgaatttctctccgttagggtcgaatacctgatgggtaccctacacgatggggatttttgccatcccttaaaggagattgcaatgacagagcaaatctttgaagaaacaaagaatgtacaagaacaaaaggaacgagaagtagaagacccggagctgtataggcttctggtacccaatgccgaagaccttcctctcgttcctgcctcagctattgaatccaactttgtctcttattttgctccagattttatgaaaccaggacatgaccaatatgtttatcgccaccccaatggattgtgtgtgattggtttggctgcaacacatgtggctcttaaggaagaagggggtatcacagctattgatttcaatgttggaaaatcggatcgcagtgggcttaaggttactggaaagcgcaagaagaatgcccagcacttggagtccaactcagctttgtgtaaagtttgcaccaaggatgcaacctatattgtgaggtgttgtgtaaaaggctctcttttggaagtgaatgatagattaatcaagcagccagaattgcttaatacagcggcagatagagaaggatatattgccattatcatgccaaaaccagcagattggctcaaagtaaaggattcattgttgggtcttgaagagtacaaaaaattgagagaagttctttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GCV_H

Protein Analysis

256

Amino Acids

28.84

Weight (kDa)

6.02

Isoelectric Point (pI)

33.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012232)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75980 AT1G75980
fragaria_vesca FvH4_3g18360
malus_domestica MD03G1242500.v1.1
prunus_persica Prupe.4G165400_v2.0.a1
pyrus_communis pycom11g23170
rosa_chinensis RchiOBHm_Chr5g0031011
rosa_laevigata RLG00000033280
rosa_multiflora Rmu_sc0001523.1_g000003
rosa_roxburghii Rroxscaffold_1G00049220 Rroxscaffold_1G00071310
rosa_rugosa Rorug05G0122300
rosa_samantha Rh4DG170500 Rh5BG214600 Rh5CG238400 Rh5DG219100
rosa_wichuraiana Rw3G027050 Rw5G019710 Rw6G016970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 128, 262
AccB1I GGYRCC 2 cut(s) 128, 262
AccB7I CCANNNNNTGG 1 cut(s) 526
AciI CCGC 1 cut(s) 656
AclWI GGATC 3 cut(s) 59, 72, 483
AcsI RAATTY 2 cut(s) 49, 95
AfaI GTAC 5 cut(s) 37, 130, 210, 264, 746
AfiI CCNNNNNNNGG 1 cut(s) 526
AflII CTTAAG 2 cut(s) 425, 488
AflIII ACRYGT 1 cut(s) 415
AgsI TTSAA 4 cut(s) 194, 308, 460, 740
AjnI CCWGG 1 cut(s) 349
AluBI AGCT 4 cut(s) 247, 302, 449, 542
AluI AGCT 4 cut(s) 247, 302, 449, 542
Alw26I GTCTC 1 cut(s) 325
AlwI GGATC 3 cut(s) 59, 72, 483
ApeKI GCWGC 2 cut(s) 407, 634
ApoI RAATTY 2 cut(s) 49, 95
AseI ATTAAT 1 cut(s) 626
Asp700I GAANNNNTTC 1 cut(s) 279
Asp718I GGTACC 2 cut(s) 128, 262
AspLEI GCGC 1 cut(s) 507
AsuC2I CCSGG 1 cut(s) 242
BamHI GGATCC 1 cut(s) 64
BanI GGYRCC 2 cut(s) 128, 262
BbsI GAAGAC 2 cut(s) 243, 282
BbvCI CCTCAGC 1 cut(s) 298
BbvI GCAGC 2 cut(s) 394, 646
BccI CCATC 4 cut(s) 78, 118, 134, 162
BciT130I CCWGG 1 cut(s) 351
BcnI CCSGG 1 cut(s) 242
BcoDI GTCTC 1 cut(s) 325
BfrI CTTAAG 2 cut(s) 425, 488
BisI GCNGC 3 cut(s) 408, 635, 657
BlsI GCNGC 3 cut(s) 409, 636, 658
Bme1390I CCNGG 2 cut(s) 242, 351
BmiI GGNNCC 3 cut(s) 66, 130, 264
BmrFI CCNGG 2 cut(s) 242, 351
BmsI GCATC 1 cut(s) 556
BpiI GAAGAC 2 cut(s) 243, 282
BplI GAGNNNNNCTC 2 cut(s) 521, 553
BpmI CTGGAG 1 cut(s) 318
Bpu10I CCTNAGC 1 cut(s) 298
BpuMI CCSGG 1 cut(s) 242
BsaBI GATNNNNATC 2 cut(s) 11, 69
BsaJI CCNNGG 1 cut(s) 561
Bsc4I CCNNNNNNNGG 1 cut(s) 526
Bse1I ACTGG 1 cut(s) 502
Bse3DI GCAATG 1 cut(s) 180
Bse8I GATNNNNATC 2 cut(s) 11, 69
BseBI CCWGG 1 cut(s) 351
BseDI CCNNGG 1 cut(s) 561
BseGI GGATG 5 cut(s) 12, 23, 70, 154, 571
BseJI GATNNNNATC 2 cut(s) 11, 69
BseLI CCNNNNNNNGG 1 cut(s) 526
BseMI GCAATG 1 cut(s) 180
BseMII CTCAG 2 cut(s) 312, 552
BseNI ACTGG 1 cut(s) 502
BseXI GCAGC 2 cut(s) 394, 646
BseYI CCCAGC 1 cut(s) 519
BshNI GGYRCC 2 cut(s) 128, 262
BsiSI CCGG 1 cut(s) 242
BslI CCNNNNNNNGG 1 cut(s) 526
BsmAI GTCTC 1 cut(s) 325
BsmI GAATGC 1 cut(s) 520
Bsp1407I TGTACA 1 cut(s) 208
Bsp143I GATC 3 cut(s) 12, 64, 475
BspACI CCGC 1 cut(s) 656
BspCNI CTCAG 2 cut(s) 311, 551
BspLI GGNNCC 3 cut(s) 66, 130, 264
BspPI GGATC 3 cut(s) 59, 72, 483
BspT107I GGYRCC 2 cut(s) 128, 262
BspTI CTTAAG 2 cut(s) 425, 488
BsrDI GCAATG 1 cut(s) 180
BsrGI TGTACA 1 cut(s) 208
BsrI ACTGG 1 cut(s) 502
BssECI CCNNGG 1 cut(s) 561
BssMI GATC 3 cut(s) 12, 64, 475
BssT1I CCWWGG 1 cut(s) 561
Bst2UI CCWGG 1 cut(s) 351
Bst6I CTCTTC 1 cut(s) 735
BstAFI CTTAAG 2 cut(s) 425, 488
BstAUI TGTACA 1 cut(s) 208
BstDEI CTNAG 2 cut(s) 298, 538
BstF5I GGATG 5 cut(s) 12, 23, 70, 154, 571
BstHHI GCGC 1 cut(s) 507
BstKTI GATC 3 cut(s) 15, 67, 478
BstMAI GTCTC 1 cut(s) 325
BstMBI GATC 3 cut(s) 12, 64, 475
BstMWI GCNNNNNNNGC 2 cut(s) 253, 643
BstNI CCWGG 1 cut(s) 351
BstNSI RCATGY 1 cut(s) 419
BstSCI CCNGG 2 cut(s) 240, 349
BstV1I GCAGC 2 cut(s) 394, 646
BstV2I GAAGAC 2 cut(s) 243, 282
BstX2I RGATCY 1 cut(s) 64
BstXI CCANNNNNNTGG 2 cut(s) 383, 705
BstYI RGATCY 1 cut(s) 64
BtsCI GGATG 5 cut(s) 12, 23, 70, 154, 571
BtsI GCAGTG 1 cut(s) 487
BtsIMutI CAGTG 1 cut(s) 487
CfoI GCGC 1 cut(s) 507
Csp6I GTAC 5 cut(s) 36, 129, 209, 263, 745
CspCI CAANNNNNGTGG 2 cut(s) 399, 434
CviAII CATG 3 cut(s) 356, 416, 688
CviQI GTAC 5 cut(s) 36, 129, 209, 263, 745
DdeI CTNAG 2 cut(s) 298, 538
DpnI GATC 3 cut(s) 14, 66, 477
DpnII GATC 3 cut(s) 12, 64, 475
Eam1104I CTCTTC 1 cut(s) 735
EarI CTCTTC 1 cut(s) 735
Eco130I CCWWGG 1 cut(s) 561
EcoRI GAATTC 1 cut(s) 49
EcoRII CCWGG 1 cut(s) 349
EcoT14I CCWWGG 1 cut(s) 561
ErhI CCWWGG 1 cut(s) 561
FaeI CATG 3 cut(s) 359, 419, 691
FaiI YATR 8 cut(s) 252, 344, 357, 366, 417, 576, 675, 689
FalI AAGNNNNNCTT 2 cut(s) 588, 620
FatI CATG 3 cut(s) 355, 415, 687
Fnu4HI GCNGC 3 cut(s) 408, 635, 657
FokI GGATG 5 cut(s) 10, 19, 57, 141, 578
Fsp4HI GCNGC 3 cut(s) 408, 635, 657
GlaI GCGC 1 cut(s) 506
GluI GCNGC 3 cut(s) 408, 635, 657
GsaI CCCAGC 1 cut(s) 523
GsuI CTGGAG 1 cut(s) 318
HapII CCGG 1 cut(s) 242
HhaI GCGC 1 cut(s) 507
Hin1II CATG 3 cut(s) 359, 419, 691
Hin6I GCGC 1 cut(s) 505
HinP1I GCGC 1 cut(s) 505
HinfI GANTC 3 cut(s) 308, 530, 722
HpaII CCGG 1 cut(s) 242
Hpy188I TCNGA 2 cut(s) 48, 475
Hpy188III TCNNGA 2 cut(s) 335, 737
HpyAV CCTTC 3 cut(s) 290, 428, 662
HpyCH4V TGCA 4 cut(s) 173, 410, 558, 569
HpyF10VI GCNNNNNNNGC 2 cut(s) 253, 643
HpyF3I CTNAG 2 cut(s) 298, 538
Hsp92II CATG 3 cut(s) 359, 419, 691
HspAI GCGC 1 cut(s) 505
KpnI GGTACC 2 cut(s) 132, 266
Kzo9I GATC 3 cut(s) 12, 64, 475
LmnI GCTCC 2 cut(s) 244, 337
Lsp1109I GCAGC 2 cut(s) 394, 646
LweI GCATC 1 cut(s) 556
MaeIII GTNAC 2 cut(s) 77, 493
MalI GATC 3 cut(s) 14, 66, 477
MboI GATC 3 cut(s) 12, 64, 475
MboII GAAGA 6 cut(s) 206, 248, 287, 443, 523, 752
MflI RGATCY 1 cut(s) 64
MluCI AATT 4 cut(s) 49, 95, 641, 752
MlyI GAGTC 1 cut(s) 539
MmeI TCCRAC 3 cut(s) 336, 445, 558
MnlI CCTC 3 cut(s) 294, 307, 576
MroXI GAANNNNTTC 1 cut(s) 279
MseI TTAA 5 cut(s) 161, 426, 489, 626, 648
MslI CAYNNNNRTG 2 cut(s) 381, 686
MspA1I CMGCKG 1 cut(s) 656
MspCI CTTAAG 2 cut(s) 425, 488
MspI CCGG 1 cut(s) 242
MspR9I CCNGG 2 cut(s) 242, 351
Mva1269I GAATGC 1 cut(s) 520
MvaI CCWGG 1 cut(s) 351
MwoI GCNNNNNNNGC 2 cut(s) 253, 643
NciI CCSGG 1 cut(s) 242
NdeII GATC 3 cut(s) 12, 64, 475
NlaIII CATG 3 cut(s) 359, 419, 691
NlaIV GGNNCC 3 cut(s) 66, 130, 264
NspI RCATGY 1 cut(s) 419
PciI ACATGT 1 cut(s) 415
PctI GAATGC 1 cut(s) 520
PdmI GAANNNNTTC 1 cut(s) 279
PfeI GAWTC 2 cut(s) 308, 722
PflMI CCANNNNNTGG 1 cut(s) 526
PkrI GCNGC 3 cut(s) 409, 636, 658
PleI GAGTC 1 cut(s) 538
PpsI GAGTC 1 cut(s) 538
PscI ACATGT 1 cut(s) 415
PshBI ATTAAT 1 cut(s) 626
Psp6I CCWGG 1 cut(s) 349
PspFI CCCAGC 1 cut(s) 519
PspGI CCWGG 1 cut(s) 349
PspN4I GGNNCC 3 cut(s) 66, 130, 264
PsuI RGATCY 1 cut(s) 64
RsaI GTAC 5 cut(s) 37, 130, 210, 264, 746
RsaNI GTAC 5 cut(s) 36, 129, 209, 263, 745
RseI CAYNNNNRTG 2 cut(s) 381, 686
SaqAI TTAA 5 cut(s) 161, 426, 489, 626, 648
SatI GCNGC 3 cut(s) 408, 635, 657
Sau3AI GATC 3 cut(s) 12, 64, 475
SchI GAGTC 1 cut(s) 539
ScrFI CCNGG 2 cut(s) 242, 351
SetI ASST 9 cut(s) 123, 249, 282, 304, 451, 495, 544, 575, 587
SfaNI GCATC 1 cut(s) 556
SmiMI CAYNNNNRTG 2 cut(s) 381, 686
SmlI CTYRAG 2 cut(s) 425, 488
SmoI CTYRAG 2 cut(s) 425, 488
Sse9I AATT 4 cut(s) 49, 95, 641, 752
SsiI CCGC 1 cut(s) 656
SspI AATATT 1 cut(s) 58
StyD4I CCNGG 2 cut(s) 240, 349
StyI CCWWGG 1 cut(s) 561
TaqI TCGA 1 cut(s) 114
TasI AATT 4 cut(s) 49, 95, 641, 752
TatI WGTACW 2 cut(s) 208, 744
TauI GCSGC 1 cut(s) 659
TfiI GAWTC 2 cut(s) 308, 722
Tru1I TTAA 5 cut(s) 161, 426, 489, 626, 648
Tru9I TTAA 5 cut(s) 161, 426, 489, 626, 648
TscAI CASTG 1 cut(s) 487
TseI GCWGC 2 cut(s) 407, 634
TspDTI ATGAA 2 cut(s) 359, 714
TspGWI ACGGA 1 cut(s) 94
TspRI CASTG 1 cut(s) 487
Van91I CCANNNNNTGG 1 cut(s) 526
Vha464I CTTAAG 2 cut(s) 425, 488
VspI ATTAAT 1 cut(s) 626
XapI RAATTY 2 cut(s) 49, 95
XceI RCATGY 1 cut(s) 419
XmnI GAANNNNTTC 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.