Rw3G027050

mitochondrial gene expression

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0012232
Physical Location & Seq
Forward (+)
37807112 .. 37810562
3451 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G027050.1

Sequence Viewer

Length: 315 bp
ATGGTGGCGAAGATAGTGGTCATCAGCCCTATTTTATATGGGATTTCAGCTGTGGTGAGCAAGTTTTGTTCATGTAAAGTCCCTGATTTTATGAAACCAGAACATGACCAATATGTTTATCGCCACCCCAATGGATTGTGTGTGATTGGTTTGGCTGCAACACATGTGGCTCTTAAGGAAGAAGGGGGTATCACAGCCATTGATTTCAATGTTGGAAAATTGGATCGCAGTGGGCTTAAGGTTACTGGAAAGCGCAAGAAGTACTTGGAGTCCAACTCAGCTTTGTGTAAAGATTGGACCAAGGATGCAACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GCV_H

Protein Analysis

104

Amino Acids

11.39

Weight (kDa)

9.1

Isoelectric Point (pI)

14.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012232)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75980 AT1G75980
fragaria_vesca FvH4_3g18360
malus_domestica MD03G1242500.v1.1
prunus_persica Prupe.4G165400_v2.0.a1
pyrus_communis pycom11g23170
rosa_chinensis RchiOBHm_Chr5g0031011
rosa_laevigata RLG00000033280
rosa_multiflora Rmu_sc0001523.1_g000003
rosa_roxburghii Rroxscaffold_1G00049220 Rroxscaffold_1G00071310
rosa_rugosa Rorug05G0122300
rosa_samantha Rh4DG170500 Rh5BG214600 Rh5CG238400 Rh5DG219100
rosa_wichuraiana Rw3G027050 Rw5G019710 Rw6G016970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 231
AfaI GTAC 1 cut(s) 263
AflII CTTAAG 2 cut(s) 173, 236
AflIII ACRYGT 1 cut(s) 163
AgsI TTSAA 1 cut(s) 208
AluBI AGCT 2 cut(s) 50, 281
AluI AGCT 2 cut(s) 50, 281
AlwI GGATC 1 cut(s) 231
ApeKI GCWGC 1 cut(s) 155
AspLEI GCGC 1 cut(s) 255
AspS9I GGNCC 1 cut(s) 297
AsuHPI GGTGA 1 cut(s) 67
AvaII GGWCC 1 cut(s) 297
BbvI GCAGC 1 cut(s) 142
BfaI CTAG 1 cut(s) 313
BfrI CTTAAG 2 cut(s) 173, 236
BisI GCNGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 157
BmcAI AGTACT 1 cut(s) 263
Bme18I GGWCC 1 cut(s) 297
BmgT120I GGNCC 1 cut(s) 297
BmsI GCATC 1 cut(s) 295
BplI GAGNNNNNCTC 2 cut(s) 260, 292
BsaJI CCNNGG 1 cut(s) 300
Bse1I ACTGG 1 cut(s) 250
BseDI CCNNGG 1 cut(s) 300
BseGI GGATG 1 cut(s) 310
BseMII CTCAG 1 cut(s) 291
BseNI ACTGG 1 cut(s) 250
BseXI GCAGC 1 cut(s) 142
BslFI GGGAC 1 cut(s) 65
BsmFI GGGAC 1 cut(s) 65
Bsp143I GATC 1 cut(s) 223
BspCNI CTCAG 1 cut(s) 290
BspPI GGATC 1 cut(s) 231
BspTI CTTAAG 2 cut(s) 173, 236
BsrI ACTGG 1 cut(s) 250
BssECI CCNNGG 1 cut(s) 300
BssMI GATC 1 cut(s) 223
BssT1I CCWWGG 1 cut(s) 300
BstAFI CTTAAG 2 cut(s) 173, 236
BstDEI CTNAG 1 cut(s) 277
BstF5I GGATG 1 cut(s) 310
BstHHI GCGC 1 cut(s) 255
BstKTI GATC 1 cut(s) 226
BstMBI GATC 1 cut(s) 223
BstNSI RCATGY 1 cut(s) 167
BstV1I GCAGC 1 cut(s) 142
BstXI CCANNNNNNTGG 1 cut(s) 131
BtsCI GGATG 1 cut(s) 310
BtsI GCAGTG 1 cut(s) 235
BtsIMutI CAGTG 1 cut(s) 235
CfoI GCGC 1 cut(s) 255
Cfr13I GGNCC 1 cut(s) 297
Csp6I GTAC 1 cut(s) 262
CspCI CAANNNNNGTGG 2 cut(s) 147, 182
CviAII CATG 3 cut(s) 72, 104, 164
CviJI RGCY 7 cut(s) 27, 50, 155, 170, 197, 235, 281
CviKI_1 RGCY 7 cut(s) 27, 50, 155, 170, 197, 235, 281
CviQI GTAC 1 cut(s) 262
DdeI CTNAG 1 cut(s) 277
DpnI GATC 1 cut(s) 225
DpnII GATC 1 cut(s) 223
Eco130I CCWWGG 1 cut(s) 300
Eco47I GGWCC 1 cut(s) 297
EcoT14I CCWWGG 1 cut(s) 300
ErhI CCWWGG 1 cut(s) 300
FaeI CATG 3 cut(s) 75, 107, 167
FaiI YATR 7 cut(s) 37, 39, 73, 92, 105, 114, 165
FalI AAGNNNNNCTT 2 cut(s) 248, 280
FaqI GGGAC 1 cut(s) 65
FatI CATG 3 cut(s) 71, 103, 163
Fnu4HI GCNGC 1 cut(s) 156
Fsp4HI GCNGC 1 cut(s) 156
FspBI CTAG 1 cut(s) 313
GlaI GCGC 1 cut(s) 254
GluI GCNGC 1 cut(s) 156
HhaI GCGC 1 cut(s) 255
Hin1II CATG 3 cut(s) 75, 107, 167
Hin6I GCGC 1 cut(s) 253
HinP1I GCGC 1 cut(s) 253
HinfI GANTC 1 cut(s) 269
HphI GGTGA 1 cut(s) 67
HpyAV CCTTC 1 cut(s) 176
HpyCH4V TGCA 2 cut(s) 158, 308
HpyF3I CTNAG 1 cut(s) 277
Hsp92II CATG 3 cut(s) 75, 107, 167
HspAI GCGC 1 cut(s) 253
Kzo9I GATC 1 cut(s) 223
LpnPI CCDG 3 cut(s) 96, 111, 231
Lsp1109I GCAGC 1 cut(s) 142
LweI GCATC 1 cut(s) 295
MaeI CTAG 1 cut(s) 313
MaeIII GTNAC 1 cut(s) 241
MalI GATC 1 cut(s) 225
MboI GATC 1 cut(s) 223
MboII GAAGA 2 cut(s) 22, 191
MluCI AATT 1 cut(s) 218
MlyI GAGTC 1 cut(s) 278
MmeI TCCRAC 2 cut(s) 193, 297
MseI TTAA 2 cut(s) 174, 237
MslI CAYNNNNRTG 1 cut(s) 129
MspA1I CMGCKG 1 cut(s) 50
MspCI CTTAAG 2 cut(s) 173, 236
NdeII GATC 1 cut(s) 223
NlaIII CATG 3 cut(s) 75, 107, 167
NspI RCATGY 1 cut(s) 167
PciI ACATGT 1 cut(s) 163
PkrI GCNGC 1 cut(s) 157
PleI GAGTC 1 cut(s) 277
PpsI GAGTC 1 cut(s) 277
PscI ACATGT 1 cut(s) 163
PspPI GGNCC 1 cut(s) 297
PvuII CAGCTG 1 cut(s) 50
RsaI GTAC 1 cut(s) 263
RsaNI GTAC 1 cut(s) 262
RseI CAYNNNNRTG 1 cut(s) 129
SaqAI TTAA 2 cut(s) 174, 237
SatI GCNGC 1 cut(s) 156
Sau3AI GATC 1 cut(s) 223
Sau96I GGNCC 1 cut(s) 297
ScaI AGTACT 1 cut(s) 263
SchI GAGTC 1 cut(s) 278
SetI ASST 4 cut(s) 52, 243, 283, 314
SfaNI GCATC 1 cut(s) 295
SgeI CNNG 9 cut(s) 73, 84, 95, 110, 116, 176, 258, 268, 277
SinI GGWCC 1 cut(s) 297
SmiMI CAYNNNNRTG 1 cut(s) 129
SmlI CTYRAG 2 cut(s) 173, 236
SmoI CTYRAG 2 cut(s) 173, 236
Sse9I AATT 1 cut(s) 218
SspMI CTAG 1 cut(s) 313
StyI CCWWGG 1 cut(s) 300
TasI AATT 1 cut(s) 218
TatI WGTACW 1 cut(s) 261
Tru1I TTAA 2 cut(s) 174, 237
Tru9I TTAA 2 cut(s) 174, 237
TscAI CASTG 1 cut(s) 235
TseI GCWGC 1 cut(s) 155
TspDTI ATGAA 2 cut(s) 60, 107
TspRI CASTG 1 cut(s) 235
Vha464I CTTAAG 2 cut(s) 173, 236
VpaK11BI GGWCC 1 cut(s) 297
XceI RCATGY 1 cut(s) 167
XspI CTAG 1 cut(s) 313
ZrmI AGTACT 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.