FvH4_3g18360

mitochondrial gene expression

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0012232
Physical Location & Seq
Forward (+)
11723888 .. 11728442
4555 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g18360.t1

Sequence Viewer

Length: 540 bp
ATGACAGAGCAGATCTTTGATGAAGCAAAGAATGTAGAAGAAAGAAATGAACAAGAAGTGGAAGACCCCGAGCTGTATAGGCTTCTGGTACCCAATGCCGAAGACCTTCCTCTCGTCCCTACCTCCGCTATTGAATCCAATTTTGTCTCTTATTTTGCTCCAGATTTTATGAAACCGGGACATGACCAATATGTTTATCGCCATCCCAACGGATTGTGTGTCATTGGTTTGGCTGCAACACATGTGGCTTTTAAGGAAGAAGGGGGTATCACAGCAATTGATTTCAATGTTGGAAAATCAGATCGCAGTGGCCTTAAGGTTACTGGAAAGCGCAAAAGGAATGCTCAGCACTTGGAGTCCAACTCAGCTTTGTGTAAAGTTTGCACAAAGGATGCGACCTATATTGTGAGGTGTTGTGTAAAAGGTTCTCTATTGGAAGTGAACGATAGATTAATCAAGCAGCCGGAATTGCTAAATACAGCGATAGAGAAGGATATATTGCCATTATCATGCCAAAACCAGCAGATTGGCTCAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GCV_H

Protein Analysis

180

Amino Acids

19.98

Weight (kDa)

5.43

Isoelectric Point (pI)

36.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012232)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75980 AT1G75980
fragaria_vesca FvH4_3g18360
malus_domestica MD03G1242500.v1.1
prunus_persica Prupe.4G165400_v2.0.a1
pyrus_communis pycom11g23170
rosa_chinensis RchiOBHm_Chr5g0031011
rosa_laevigata RLG00000033280
rosa_multiflora Rmu_sc0001523.1_g000003
rosa_roxburghii Rroxscaffold_1G00049220 Rroxscaffold_1G00071310
rosa_rugosa Rorug05G0122300
rosa_samantha Rh4DG170500 Rh5BG214600 Rh5CG238400 Rh5DG219100
rosa_wichuraiana Rw3G027050 Rw5G019710 Rw6G016970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 88
AccB1I GGYRCC 1 cut(s) 88
AciI CCGC 1 cut(s) 126
AfaI GTAC 1 cut(s) 90
AflII CTTAAG 1 cut(s) 314
AflIII ACRYGT 1 cut(s) 241
AgsI TTSAA 2 cut(s) 134, 286
AluBI AGCT 2 cut(s) 73, 368
AluI AGCT 2 cut(s) 73, 368
Alw26I GTCTC 1 cut(s) 151
Ama87I CYCGRG 1 cut(s) 68
AoxI GGCC 1 cut(s) 310
ApeKI GCWGC 2 cut(s) 233, 460
AseI ATTAAT 1 cut(s) 452
Asp700I GAANNNNTTC 1 cut(s) 105
Asp718I GGTACC 1 cut(s) 88
AspLEI GCGC 1 cut(s) 333
AsuC2I CCSGG 1 cut(s) 177
AvaI CYCGRG 1 cut(s) 68
BanI GGYRCC 1 cut(s) 88
BbsI GAAGAC 2 cut(s) 69, 108
BbvI GCAGC 2 cut(s) 220, 472
BccI CCATC 1 cut(s) 210
BcnI CCSGG 1 cut(s) 177
BcoDI GTCTC 1 cut(s) 151
BfrI CTTAAG 1 cut(s) 314
BglII AGATCT 1 cut(s) 12
BisI GCNGC 2 cut(s) 234, 461
BlpI GCTNAGC 1 cut(s) 345
BlsI GCNGC 2 cut(s) 235, 462
Bme1390I CCNGG 1 cut(s) 177
BmeT110I CYCGRG 1 cut(s) 68
BmiI GGNNCC 1 cut(s) 90
BmrFI CCNGG 1 cut(s) 177
BmsI GCATC 1 cut(s) 382
BpiI GAAGAC 2 cut(s) 69, 108
BplI GAGNNNNNCTC 2 cut(s) 347, 379
BpmI CTGGAG 1 cut(s) 144
Bpu1102I GCTNAGC 1 cut(s) 345
BpuMI CCSGG 1 cut(s) 177
Bse1I ACTGG 1 cut(s) 328
BseGI GGATG 2 cut(s) 202, 397
BseMII CTCAG 2 cut(s) 359, 378
BseNI ACTGG 1 cut(s) 328
BseXI GCAGC 2 cut(s) 220, 472
BshFI GGCC 1 cut(s) 312
BshNI GGYRCC 1 cut(s) 88
BsiHKCI CYCGRG 1 cut(s) 68
BsiSI CCGG 2 cut(s) 176, 464
BslFI GGGAC 2 cut(s) 101, 192
BsmAI GTCTC 1 cut(s) 151
BsmFI GGGAC 2 cut(s) 101, 192
BsmI GAATGC 1 cut(s) 346
BsnI GGCC 1 cut(s) 312
BsoBI CYCGRG 1 cut(s) 68
Bsp143I GATC 2 cut(s) 12, 301
Bsp1720I GCTNAGC 1 cut(s) 345
BspACI CCGC 1 cut(s) 126
BspANI GGCC 1 cut(s) 312
BspCNI CTCAG 2 cut(s) 358, 377
BspLI GGNNCC 1 cut(s) 90
BspT107I GGYRCC 1 cut(s) 88
BspTI CTTAAG 1 cut(s) 314
BsrI ACTGG 1 cut(s) 328
BssMI GATC 2 cut(s) 12, 301
BstAFI CTTAAG 1 cut(s) 314
BstDEI CTNAG 2 cut(s) 345, 364
BstF5I GGATG 2 cut(s) 202, 397
BstHHI GCGC 1 cut(s) 333
BstKTI GATC 2 cut(s) 15, 304
BstMAI GTCTC 1 cut(s) 151
BstMBI GATC 2 cut(s) 12, 301
BstMWI GCNNNNNNNGC 2 cut(s) 79, 469
BstNSI RCATGY 1 cut(s) 245
BstSCI CCNGG 1 cut(s) 175
BstV1I GCAGC 2 cut(s) 220, 472
BstV2I GAAGAC 2 cut(s) 69, 108
BstX2I RGATCY 1 cut(s) 12
BstXI CCANNNNNNTGG 1 cut(s) 527
BstYI RGATCY 1 cut(s) 12
BsuRI GGCC 1 cut(s) 312
BtsCI GGATG 2 cut(s) 202, 397
BtsI GCAGTG 1 cut(s) 313
BtsIMutI CAGTG 1 cut(s) 313
CfoI GCGC 1 cut(s) 333
Csp6I GTAC 1 cut(s) 89
CspCI CAANNNNNGTGG 2 cut(s) 225, 260
CviAII CATG 3 cut(s) 182, 242, 510
CviJI RGCY 8 cut(s) 73, 82, 233, 248, 312, 368, 463, 531
CviKI_1 RGCY 8 cut(s) 73, 82, 233, 248, 312, 368, 463, 531
CviQI GTAC 1 cut(s) 89
DdeI CTNAG 2 cut(s) 345, 364
DpnI GATC 2 cut(s) 14, 303
DpnII GATC 2 cut(s) 12, 301
Eco88I CYCGRG 1 cut(s) 68
FaeI CATG 3 cut(s) 185, 245, 513
FaiI YATR 8 cut(s) 78, 170, 183, 192, 243, 402, 497, 511
FaqI GGGAC 2 cut(s) 101, 192
FatI CATG 3 cut(s) 181, 241, 509
Fnu4HI GCNGC 2 cut(s) 234, 461
FokI GGATG 2 cut(s) 189, 404
Fsp4HI GCNGC 2 cut(s) 234, 461
GlaI GCGC 1 cut(s) 332
GluI GCNGC 2 cut(s) 234, 461
GsuI CTGGAG 1 cut(s) 144
HaeIII GGCC 1 cut(s) 312
HapII CCGG 2 cut(s) 176, 464
HhaI GCGC 1 cut(s) 333
Hin1II CATG 3 cut(s) 185, 245, 513
Hin6I GCGC 1 cut(s) 331
HinP1I GCGC 1 cut(s) 331
HinfI GANTC 2 cut(s) 134, 356
HpaII CCGG 2 cut(s) 176, 464
Hpy166II GTNNAC 1 cut(s) 442
Hpy188I TCNGA 1 cut(s) 301
Hpy188III TCNNGA 1 cut(s) 161
Hpy8I GTNNAC 1 cut(s) 442
HpyAV CCTTC 3 cut(s) 116, 254, 484
HpyCH4V TGCA 2 cut(s) 236, 384
HpyF10VI GCNNNNNNNGC 2 cut(s) 79, 469
HpyF3I CTNAG 2 cut(s) 345, 364
Hsp92II CATG 3 cut(s) 185, 245, 513
HspAI GCGC 1 cut(s) 331
KpnI GGTACC 1 cut(s) 92
Kzo9I GATC 2 cut(s) 12, 301
LmnI GCTCC 1 cut(s) 163
LpnPI CCDG 6 cut(s) 71, 174, 189, 309, 477, 533
Lsp1109I GCAGC 2 cut(s) 220, 472
LweI GCATC 1 cut(s) 382
MaeIII GTNAC 1 cut(s) 319
MalI GATC 2 cut(s) 14, 303
MboI GATC 2 cut(s) 12, 301
MboII GAAGA 4 cut(s) 50, 74, 113, 269
MfeI CAATTG 1 cut(s) 276
MflI RGATCY 1 cut(s) 12
MluCI AATT 3 cut(s) 139, 276, 467
MlyI GAGTC 1 cut(s) 365
MmeI TCCRAC 2 cut(s) 271, 384
MnlI CCTC 3 cut(s) 120, 133, 402
MroXI GAANNNNTTC 1 cut(s) 105
MseI TTAA 3 cut(s) 252, 315, 452
MslI CAYNNNNRTG 1 cut(s) 508
MspCI CTTAAG 1 cut(s) 314
MspI CCGG 2 cut(s) 176, 464
MspR9I CCNGG 1 cut(s) 177
MunI CAATTG 1 cut(s) 276
Mva1269I GAATGC 1 cut(s) 346
MwoI GCNNNNNNNGC 2 cut(s) 79, 469
NciI CCSGG 1 cut(s) 177
NdeII GATC 2 cut(s) 12, 301
NlaIII CATG 3 cut(s) 185, 245, 513
NlaIV GGNNCC 1 cut(s) 90
NspI RCATGY 1 cut(s) 245
PciI ACATGT 1 cut(s) 241
PctI GAATGC 1 cut(s) 346
PdmI GAANNNNTTC 1 cut(s) 105
PfeI GAWTC 1 cut(s) 134
PkrI GCNGC 2 cut(s) 235, 462
PleI GAGTC 1 cut(s) 364
PpsI GAGTC 1 cut(s) 364
PscI ACATGT 1 cut(s) 241
PshBI ATTAAT 1 cut(s) 452
PspN4I GGNNCC 1 cut(s) 90
PsuI RGATCY 1 cut(s) 12
RsaI GTAC 1 cut(s) 90
RsaNI GTAC 1 cut(s) 89
RseI CAYNNNNRTG 1 cut(s) 508
SaqAI TTAA 3 cut(s) 252, 315, 452
SatI GCNGC 2 cut(s) 234, 461
Sau3AI GATC 2 cut(s) 12, 301
SchI GAGTC 1 cut(s) 365
ScrFI CCNGG 1 cut(s) 177
SetI ASST 8 cut(s) 75, 108, 125, 321, 370, 401, 413, 427
SfaNI GCATC 1 cut(s) 382
SmiMI CAYNNNNRTG 1 cut(s) 508
SmlI CTYRAG 1 cut(s) 314
SmoI CTYRAG 1 cut(s) 314
Sse9I AATT 3 cut(s) 139, 276, 467
SsiI CCGC 1 cut(s) 126
StyD4I CCNGG 1 cut(s) 175
TasI AATT 3 cut(s) 139, 276, 467
TfiI GAWTC 1 cut(s) 134
Tru1I TTAA 3 cut(s) 252, 315, 452
Tru9I TTAA 3 cut(s) 252, 315, 452
TscAI CASTG 1 cut(s) 313
TseI GCWGC 2 cut(s) 233, 460
TspDTI ATGAA 3 cut(s) 36, 63, 185
TspGWI ACGGA 1 cut(s) 225
TspRI CASTG 1 cut(s) 313
Vha464I CTTAAG 1 cut(s) 314
VspI ATTAAT 1 cut(s) 452
XceI RCATGY 1 cut(s) 245
XmnI GAANNNNTTC 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.