Rroxscaffold_1G00049220

mitochondrial gene expression

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0012232
Physical Location & Seq
Reverse (-)
69399809 .. 69413138
13330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00049220.1

Sequence Viewer

Length: 597 bp
ATGACAGAACAAATCTTTGAAGAAACAAAGAATGTACAAGAACAAAAGGAACGAGAAGTAGAAGACCCAGAGCTGTATAGGCTTCTGGTACCCAATGCCGAAGACCTTCCTCTCGTTCCTGCCTCAGCTATTGAATCCAACTTTGTCTCTTATTTTGCTCCAGATTTTATGAAACCAGGACATGACCAATATGTTTATCGCCACCCCAATGGATTGTGTGTGATTGGTTTGGCTGCAACACATGTGGCTCTTAAGGAAGAAGGGGGTATCACAGCTATTGATTTCAATGTTGGAAAATCGGATCGCAGTGGGCTTAAGGTTACTGGAAAGCGCAAGAAGAATGCCCAGCACTTGGAGTCCAACTCAGCTTTGTGTAAAGTTTGCACCAAGGATGCAACCTATGTTGTGAGGTGTTGTGTAAAAGGCTCTCTTTTGGAAGTGAATGATAGATTAATCACGCAGCCAGAATTGCTTAATACAGCGGCAGATAGAGAAGGATATATTGCCATTATCATGCCAAAACCAGCAGATTGGCTCAAAGTAAAGGATTCATTGTTGGGTCTTCAAGAGTACAAAAAGCTGAGAGAAGTTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GCV_H

Protein Analysis

198

Amino Acids

22.19

Weight (kDa)

5.87

Isoelectric Point (pI)

29.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012232)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75980 AT1G75980
fragaria_vesca FvH4_3g18360
malus_domestica MD03G1242500.v1.1
prunus_persica Prupe.4G165400_v2.0.a1
pyrus_communis pycom11g23170
rosa_chinensis RchiOBHm_Chr5g0031011
rosa_laevigata RLG00000033280
rosa_multiflora Rmu_sc0001523.1_g000003
rosa_roxburghii Rroxscaffold_1G00049220 Rroxscaffold_1G00071310
rosa_rugosa Rorug05G0122300
rosa_samantha Rh4DG170500 Rh5BG214600 Rh5CG238400 Rh5DG219100
rosa_wichuraiana Rw3G027050 Rw5G019710 Rw6G016970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 88
AccB1I GGYRCC 1 cut(s) 88
AccB7I CCANNNNNTGG 1 cut(s) 352
AciI CCGC 1 cut(s) 482
AclWI GGATC 1 cut(s) 309
AfaI GTAC 3 cut(s) 36, 90, 572
AfiI CCNNNNNNNGG 1 cut(s) 352
AflII CTTAAG 2 cut(s) 251, 314
AflIII ACRYGT 1 cut(s) 241
AgsI TTSAA 4 cut(s) 20, 134, 286, 566
AjnI CCWGG 1 cut(s) 175
AluBI AGCT 5 cut(s) 73, 128, 275, 368, 580
AluI AGCT 5 cut(s) 73, 128, 275, 368, 580
Alw26I GTCTC 1 cut(s) 151
AlwI GGATC 1 cut(s) 309
ApeKI GCWGC 2 cut(s) 233, 460
AseI ATTAAT 1 cut(s) 452
Asp700I GAANNNNTTC 1 cut(s) 105
Asp718I GGTACC 1 cut(s) 88
AspLEI GCGC 1 cut(s) 333
BanI GGYRCC 1 cut(s) 88
BbsI GAAGAC 3 cut(s) 69, 108, 554
BbvCI CCTCAGC 1 cut(s) 124
BbvI GCAGC 2 cut(s) 220, 472
BciT130I CCWGG 1 cut(s) 177
BcoDI GTCTC 1 cut(s) 151
BfrI CTTAAG 2 cut(s) 251, 314
BisI GCNGC 3 cut(s) 234, 461, 483
BlsI GCNGC 3 cut(s) 235, 462, 484
Bme1390I CCNGG 1 cut(s) 177
BmiI GGNNCC 1 cut(s) 90
BmrFI CCNGG 1 cut(s) 177
BmsI GCATC 1 cut(s) 382
BpiI GAAGAC 3 cut(s) 69, 108, 554
BplI GAGNNNNNCTC 2 cut(s) 347, 379
BpmI CTGGAG 1 cut(s) 144
Bpu10I CCTNAGC 1 cut(s) 124
BsaJI CCNNGG 1 cut(s) 387
Bsc4I CCNNNNNNNGG 1 cut(s) 352
Bse1I ACTGG 1 cut(s) 328
BseBI CCWGG 1 cut(s) 177
BseDI CCNNGG 1 cut(s) 387
BseGI GGATG 1 cut(s) 397
BseLI CCNNNNNNNGG 1 cut(s) 352
BseMII CTCAG 3 cut(s) 138, 378, 572
BseNI ACTGG 1 cut(s) 328
BseXI GCAGC 2 cut(s) 220, 472
BseYI CCCAGC 1 cut(s) 345
BshNI GGYRCC 1 cut(s) 88
BslI CCNNNNNNNGG 1 cut(s) 352
BsmAI GTCTC 1 cut(s) 151
BsmI GAATGC 1 cut(s) 346
Bsp1407I TGTACA 1 cut(s) 34
Bsp143I GATC 1 cut(s) 301
BspACI CCGC 1 cut(s) 482
BspCNI CTCAG 3 cut(s) 137, 377, 573
BspLI GGNNCC 1 cut(s) 90
BspPI GGATC 1 cut(s) 309
BspT107I GGYRCC 1 cut(s) 88
BspTI CTTAAG 2 cut(s) 251, 314
BsrGI TGTACA 1 cut(s) 34
BsrI ACTGG 1 cut(s) 328
BssECI CCNNGG 1 cut(s) 387
BssMI GATC 1 cut(s) 301
BssT1I CCWWGG 1 cut(s) 387
Bst2UI CCWGG 1 cut(s) 177
BstAFI CTTAAG 2 cut(s) 251, 314
BstAUI TGTACA 1 cut(s) 34
BstDEI CTNAG 3 cut(s) 124, 364, 581
BstF5I GGATG 1 cut(s) 397
BstHHI GCGC 1 cut(s) 333
BstKTI GATC 1 cut(s) 304
BstMAI GTCTC 1 cut(s) 151
BstMBI GATC 1 cut(s) 301
BstMWI GCNNNNNNNGC 2 cut(s) 79, 469
BstNI CCWGG 1 cut(s) 177
BstNSI RCATGY 1 cut(s) 245
BstSCI CCNGG 1 cut(s) 175
BstV1I GCAGC 2 cut(s) 220, 472
BstV2I GAAGAC 3 cut(s) 69, 108, 554
BstXI CCANNNNNNTGG 2 cut(s) 209, 531
BtsCI GGATG 1 cut(s) 397
BtsI GCAGTG 1 cut(s) 313
BtsIMutI CAGTG 1 cut(s) 313
CfoI GCGC 1 cut(s) 333
Csp6I GTAC 3 cut(s) 35, 89, 571
CspCI CAANNNNNGTGG 2 cut(s) 225, 260
CviAII CATG 3 cut(s) 182, 242, 514
CviQI GTAC 3 cut(s) 35, 89, 571
DdeI CTNAG 3 cut(s) 124, 364, 581
DpnI GATC 1 cut(s) 303
DpnII GATC 1 cut(s) 301
Eco130I CCWWGG 1 cut(s) 387
EcoRII CCWGG 1 cut(s) 175
EcoT14I CCWWGG 1 cut(s) 387
ErhI CCWWGG 1 cut(s) 387
FaeI CATG 3 cut(s) 185, 245, 517
FaiI YATR 8 cut(s) 78, 170, 183, 192, 243, 402, 501, 515
FalI AAGNNNNNCTT 2 cut(s) 414, 446
FatI CATG 3 cut(s) 181, 241, 513
Fnu4HI GCNGC 3 cut(s) 234, 461, 483
FokI GGATG 1 cut(s) 404
Fsp4HI GCNGC 3 cut(s) 234, 461, 483
GlaI GCGC 1 cut(s) 332
GluI GCNGC 3 cut(s) 234, 461, 483
GsaI CCCAGC 1 cut(s) 349
GsuI CTGGAG 1 cut(s) 144
HhaI GCGC 1 cut(s) 333
Hin1II CATG 3 cut(s) 185, 245, 517
Hin6I GCGC 1 cut(s) 331
HinP1I GCGC 1 cut(s) 331
HinfI GANTC 3 cut(s) 134, 356, 548
Hpy188I TCNGA 1 cut(s) 301
Hpy188III TCNNGA 2 cut(s) 161, 566
HpyAV CCTTC 3 cut(s) 116, 254, 488
HpyCH4V TGCA 3 cut(s) 236, 384, 395
HpyF10VI GCNNNNNNNGC 2 cut(s) 79, 469
HpyF3I CTNAG 3 cut(s) 124, 364, 581
Hsp92II CATG 3 cut(s) 185, 245, 517
HspAI GCGC 1 cut(s) 331
KpnI GGTACC 1 cut(s) 92
Kzo9I GATC 1 cut(s) 301
LmnI GCTCC 1 cut(s) 163
Lsp1109I GCAGC 2 cut(s) 220, 472
LweI GCATC 1 cut(s) 382
MaeIII GTNAC 1 cut(s) 319
MalI GATC 1 cut(s) 303
MboI GATC 1 cut(s) 301
MboII GAAGA 6 cut(s) 32, 74, 113, 269, 349, 554
MluCI AATT 1 cut(s) 467
MlyI GAGTC 1 cut(s) 365
MmeI TCCRAC 3 cut(s) 162, 271, 384
MnlI CCTC 3 cut(s) 120, 133, 402
MroXI GAANNNNTTC 1 cut(s) 105
MseI TTAA 4 cut(s) 252, 315, 452, 474
MslI CAYNNNNRTG 2 cut(s) 207, 512
MspA1I CMGCKG 1 cut(s) 482
MspCI CTTAAG 2 cut(s) 251, 314
MspR9I CCNGG 1 cut(s) 177
Mva1269I GAATGC 1 cut(s) 346
MvaI CCWGG 1 cut(s) 177
MwoI GCNNNNNNNGC 2 cut(s) 79, 469
NdeII GATC 1 cut(s) 301
NlaIII CATG 3 cut(s) 185, 245, 517
NlaIV GGNNCC 1 cut(s) 90
NspI RCATGY 1 cut(s) 245
PciI ACATGT 1 cut(s) 241
PctI GAATGC 1 cut(s) 346
PdmI GAANNNNTTC 1 cut(s) 105
PfeI GAWTC 2 cut(s) 134, 548
PflMI CCANNNNNTGG 1 cut(s) 352
PkrI GCNGC 3 cut(s) 235, 462, 484
PleI GAGTC 1 cut(s) 364
PpsI GAGTC 1 cut(s) 364
PscI ACATGT 1 cut(s) 241
PshBI ATTAAT 1 cut(s) 452
Psp6I CCWGG 1 cut(s) 175
PspFI CCCAGC 1 cut(s) 345
PspGI CCWGG 1 cut(s) 175
PspN4I GGNNCC 1 cut(s) 90
RsaI GTAC 3 cut(s) 36, 90, 572
RsaNI GTAC 3 cut(s) 35, 89, 571
RseI CAYNNNNRTG 2 cut(s) 207, 512
SaqAI TTAA 4 cut(s) 252, 315, 452, 474
SatI GCNGC 3 cut(s) 234, 461, 483
Sau3AI GATC 1 cut(s) 301
SchI GAGTC 1 cut(s) 365
ScrFI CCNGG 1 cut(s) 177
SetI ASST 9 cut(s) 75, 108, 130, 277, 321, 370, 401, 413, 582
SfaNI GCATC 1 cut(s) 382
SmiMI CAYNNNNRTG 2 cut(s) 207, 512
SmlI CTYRAG 2 cut(s) 251, 314
SmoI CTYRAG 2 cut(s) 251, 314
Sse9I AATT 1 cut(s) 467
SsiI CCGC 1 cut(s) 482
StyD4I CCNGG 1 cut(s) 175
StyI CCWWGG 1 cut(s) 387
TasI AATT 1 cut(s) 467
TatI WGTACW 2 cut(s) 34, 570
TauI GCSGC 1 cut(s) 485
TfiI GAWTC 2 cut(s) 134, 548
Tru1I TTAA 4 cut(s) 252, 315, 452, 474
Tru9I TTAA 4 cut(s) 252, 315, 452, 474
TscAI CASTG 1 cut(s) 313
TseI GCWGC 2 cut(s) 233, 460
TspDTI ATGAA 2 cut(s) 185, 540
TspRI CASTG 1 cut(s) 313
Van91I CCANNNNNTGG 1 cut(s) 352
Vha464I CTTAAG 2 cut(s) 251, 314
VspI ATTAAT 1 cut(s) 452
XceI RCATGY 1 cut(s) 245
XmnI GAANNNNTTC 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.