Rh5BG214600

mitochondrial gene expression

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0012232
Physical Location & Seq
Forward (+)
24789128 .. 24791164
2037 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG214600.1

Sequence Viewer

Length: 453 bp
ATGACAGAGCAAATCTTTGAAGAAACAAAGAATGTACAAGAACAAAAGGAACGAGAAGTAGAAGACCCGGAGCTGTATAGGCTTCTGGTACCCAATGCCGAAGACCTTCCTCTCGTTCCTGCCTCAGCTATTGAATCCAACTTTGTCTCTTATTTTGCTCCAGATTTTATGAAACCAGGACATGACCAATATGTTTATCGCCACCCCAATGGATTGTGTGTGATTGGTTTGGCTGCAACACATGTGGCTCTTAAGGAAGAAGGGGGTATCACAGCTATTGATTTCAATGTTGGAAAATCGGATCGCAGTGGGCTTAAGGTTACTGGAAAGCGCAAGAAGGCAGATAGAGAAGGATATATTGCCATTATCATGCCAAAACCAGCAGATTGGCTCAAAGTAAAGGATTCATTGTTGGGTCTTGAAGAGTACAAAAAATTGAGAGAAGTTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GCV_H

Protein Analysis

150

Amino Acids

16.95

Weight (kDa)

5.47

Isoelectric Point (pI)

32.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012232)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75980 AT1G75980
fragaria_vesca FvH4_3g18360
malus_domestica MD03G1242500.v1.1
prunus_persica Prupe.4G165400_v2.0.a1
pyrus_communis pycom11g23170
rosa_chinensis RchiOBHm_Chr5g0031011
rosa_laevigata RLG00000033280
rosa_multiflora Rmu_sc0001523.1_g000003
rosa_roxburghii Rroxscaffold_1G00049220 Rroxscaffold_1G00071310
rosa_rugosa Rorug05G0122300
rosa_samantha Rh4DG170500 Rh5BG214600 Rh5CG238400 Rh5DG219100
rosa_wichuraiana Rw3G027050 Rw5G019710 Rw6G016970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 88
AccB1I GGYRCC 1 cut(s) 88
AclWI GGATC 1 cut(s) 309
AfaI GTAC 3 cut(s) 36, 90, 428
AflII CTTAAG 2 cut(s) 251, 314
AflIII ACRYGT 1 cut(s) 241
AgsI TTSAA 4 cut(s) 20, 134, 286, 422
AjnI CCWGG 1 cut(s) 175
AluBI AGCT 3 cut(s) 73, 128, 275
AluI AGCT 3 cut(s) 73, 128, 275
Alw26I GTCTC 1 cut(s) 151
AlwI GGATC 1 cut(s) 309
ApeKI GCWGC 1 cut(s) 233
Asp700I GAANNNNTTC 1 cut(s) 105
Asp718I GGTACC 1 cut(s) 88
AspLEI GCGC 1 cut(s) 333
AsuC2I CCSGG 1 cut(s) 68
BanI GGYRCC 1 cut(s) 88
BbsI GAAGAC 2 cut(s) 69, 108
BbvCI CCTCAGC 1 cut(s) 124
BbvI GCAGC 1 cut(s) 220
BciT130I CCWGG 1 cut(s) 177
BcnI CCSGG 1 cut(s) 68
BcoDI GTCTC 1 cut(s) 151
BfrI CTTAAG 2 cut(s) 251, 314
BisI GCNGC 1 cut(s) 234
BlsI GCNGC 1 cut(s) 235
Bme1390I CCNGG 2 cut(s) 68, 177
BmiI GGNNCC 1 cut(s) 90
BmrFI CCNGG 2 cut(s) 68, 177
BpiI GAAGAC 2 cut(s) 69, 108
BpmI CTGGAG 1 cut(s) 144
Bpu10I CCTNAGC 1 cut(s) 124
BpuMI CCSGG 1 cut(s) 68
Bse1I ACTGG 1 cut(s) 328
BseBI CCWGG 1 cut(s) 177
BseMII CTCAG 1 cut(s) 138
BseNI ACTGG 1 cut(s) 328
BseXI GCAGC 1 cut(s) 220
BshNI GGYRCC 1 cut(s) 88
BsiSI CCGG 1 cut(s) 68
BsmAI GTCTC 1 cut(s) 151
Bsp1407I TGTACA 1 cut(s) 34
Bsp143I GATC 1 cut(s) 301
BspCNI CTCAG 1 cut(s) 137
BspLI GGNNCC 1 cut(s) 90
BspPI GGATC 1 cut(s) 309
BspT107I GGYRCC 1 cut(s) 88
BspTI CTTAAG 2 cut(s) 251, 314
BsrGI TGTACA 1 cut(s) 34
BsrI ACTGG 1 cut(s) 328
BssMI GATC 1 cut(s) 301
Bst2UI CCWGG 1 cut(s) 177
Bst6I CTCTTC 1 cut(s) 417
BstAFI CTTAAG 2 cut(s) 251, 314
BstAUI TGTACA 1 cut(s) 34
BstDEI CTNAG 1 cut(s) 124
BstHHI GCGC 1 cut(s) 333
BstKTI GATC 1 cut(s) 304
BstMAI GTCTC 1 cut(s) 151
BstMBI GATC 1 cut(s) 301
BstMWI GCNNNNNNNGC 1 cut(s) 79
BstNI CCWGG 1 cut(s) 177
BstNSI RCATGY 1 cut(s) 245
BstSCI CCNGG 2 cut(s) 66, 175
BstV1I GCAGC 1 cut(s) 220
BstV2I GAAGAC 2 cut(s) 69, 108
BstXI CCANNNNNNTGG 2 cut(s) 209, 387
BtsI GCAGTG 1 cut(s) 313
BtsIMutI CAGTG 1 cut(s) 313
CfoI GCGC 1 cut(s) 333
Csp6I GTAC 3 cut(s) 35, 89, 427
CspCI CAANNNNNGTGG 2 cut(s) 225, 260
CviAII CATG 3 cut(s) 182, 242, 370
CviJI RGCY 8 cut(s) 73, 82, 128, 233, 248, 275, 313, 391
CviKI_1 RGCY 8 cut(s) 73, 82, 128, 233, 248, 275, 313, 391
CviQI GTAC 3 cut(s) 35, 89, 427
DdeI CTNAG 1 cut(s) 124
DpnI GATC 1 cut(s) 303
DpnII GATC 1 cut(s) 301
Eam1104I CTCTTC 1 cut(s) 417
EarI CTCTTC 1 cut(s) 417
EcoRII CCWGG 1 cut(s) 175
FaeI CATG 3 cut(s) 185, 245, 373
FaiI YATR 7 cut(s) 78, 170, 183, 192, 243, 357, 371
FatI CATG 3 cut(s) 181, 241, 369
Fnu4HI GCNGC 1 cut(s) 234
Fsp4HI GCNGC 1 cut(s) 234
GlaI GCGC 1 cut(s) 332
GluI GCNGC 1 cut(s) 234
GsuI CTGGAG 1 cut(s) 144
HapII CCGG 1 cut(s) 68
HhaI GCGC 1 cut(s) 333
Hin1II CATG 3 cut(s) 185, 245, 373
Hin6I GCGC 1 cut(s) 331
HinP1I GCGC 1 cut(s) 331
HinfI GANTC 2 cut(s) 134, 404
HpaII CCGG 1 cut(s) 68
Hpy188I TCNGA 1 cut(s) 301
Hpy188III TCNNGA 2 cut(s) 161, 419
HpyAV CCTTC 4 cut(s) 116, 254, 331, 344
HpyCH4V TGCA 1 cut(s) 236
HpyF10VI GCNNNNNNNGC 1 cut(s) 79
HpyF3I CTNAG 1 cut(s) 124
Hsp92II CATG 3 cut(s) 185, 245, 373
HspAI GCGC 1 cut(s) 331
KpnI GGTACC 1 cut(s) 92
Kzo9I GATC 1 cut(s) 301
LmnI GCTCC 2 cut(s) 70, 163
LpnPI CCDG 8 cut(s) 71, 81, 132, 162, 174, 189, 309, 393
Lsp1109I GCAGC 1 cut(s) 220
MaeIII GTNAC 1 cut(s) 319
MalI GATC 1 cut(s) 303
MboI GATC 1 cut(s) 301
MboII GAAGA 5 cut(s) 32, 74, 113, 269, 434
MluCI AATT 1 cut(s) 434
MmeI TCCRAC 2 cut(s) 162, 271
MnlI CCTC 2 cut(s) 120, 133
MroXI GAANNNNTTC 1 cut(s) 105
MseI TTAA 2 cut(s) 252, 315
MslI CAYNNNNRTG 2 cut(s) 207, 368
MspCI CTTAAG 2 cut(s) 251, 314
MspI CCGG 1 cut(s) 68
MspR9I CCNGG 2 cut(s) 68, 177
MvaI CCWGG 1 cut(s) 177
MwoI GCNNNNNNNGC 1 cut(s) 79
NciI CCSGG 1 cut(s) 68
NdeII GATC 1 cut(s) 301
NlaIII CATG 3 cut(s) 185, 245, 373
NlaIV GGNNCC 1 cut(s) 90
NspI RCATGY 1 cut(s) 245
PciI ACATGT 1 cut(s) 241
PdmI GAANNNNTTC 1 cut(s) 105
PfeI GAWTC 2 cut(s) 134, 404
PkrI GCNGC 1 cut(s) 235
PscI ACATGT 1 cut(s) 241
Psp6I CCWGG 1 cut(s) 175
PspGI CCWGG 1 cut(s) 175
PspN4I GGNNCC 1 cut(s) 90
RsaI GTAC 3 cut(s) 36, 90, 428
RsaNI GTAC 3 cut(s) 35, 89, 427
RseI CAYNNNNRTG 2 cut(s) 207, 368
SaqAI TTAA 2 cut(s) 252, 315
SatI GCNGC 1 cut(s) 234
Sau3AI GATC 1 cut(s) 301
ScrFI CCNGG 2 cut(s) 68, 177
SetI ASST 5 cut(s) 75, 108, 130, 277, 321
SmiMI CAYNNNNRTG 2 cut(s) 207, 368
SmlI CTYRAG 2 cut(s) 251, 314
SmoI CTYRAG 2 cut(s) 251, 314
Sse9I AATT 1 cut(s) 434
StyD4I CCNGG 2 cut(s) 66, 175
TasI AATT 1 cut(s) 434
TatI WGTACW 2 cut(s) 34, 426
TfiI GAWTC 2 cut(s) 134, 404
Tru1I TTAA 2 cut(s) 252, 315
Tru9I TTAA 2 cut(s) 252, 315
TscAI CASTG 1 cut(s) 313
TseI GCWGC 1 cut(s) 233
TspDTI ATGAA 2 cut(s) 185, 396
TspRI CASTG 1 cut(s) 313
Vha464I CTTAAG 2 cut(s) 251, 314
XceI RCATGY 1 cut(s) 245
XmnI GAANNNNTTC 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.