Rh4DG170500

mitochondrial gene expression

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0012232
Physical Location & Seq
Forward (+)
34014607 .. 34060348
45742 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG170500.1

Sequence Viewer

Length: 927 bp
ATGAAGGCTCTTATTCCTCAGGTCACACAGTTTATATATTTTGGAGGGCTTTCTATGCTGTGTGTTGGTCCAATGATGTTGTGTAGTAGTTCAATCGATATCTTTGGCATAGTTTCAATCCAATTCAGGTACGACCAATTTCCAGATTTTATGAAACCAGAACATGACCAATATGTTTATCACCACCCCAACGGATTGTGTGTGATTGGTTTGGCTGCAACACATGTGGCTCTTAAGGAAGAAGGGGGTATCACAGCCATTGATTTCAATGTTGGAAAATCAGATCTCAGTGGGCTTAAGGTTACTGGAAAGCGCAAGAAGAAACTTGACGGCAAGTTGTGGTTGTTGGTTGTCGGAAATCGGCATTCTCATGGCAAGACCAATGGGAGGATTGGAATTGTACGGGGGAGAGAGCCTGATTATATAAAAATCCCAGCATGGACAACTAGTGTCACCGGATGGGGAAAGAATGATGAGAGCGAGCTACTTGAGATACTACGAGGCCAGCCTACCCCATACCTTCCACTCCCAGAGGACCTTAAATACATTCCTTCAGCGTCACCATGGCTGGCAAGCACGGTGGTATGTGGCCTACCAGATTTCCTACCTTTTGATGGTGGTGGCTTGGTTAGGCCAAGGCAGGCGCGGCTCAAAGGTCAAGGTTCATTTCCAGAGGAGTGGGCTATTCCGTTTCGATCATGGCGGCGGGGCTTGAAGTGTTCGTTCGGGTCGGGTCAGTTTCTGTTTGGGTCTTCTCTCCATGGATGGCATTACCTCCGTCGTGGACGTCTCCTGGATAATCGACAAGCGTTGGTCGTCTGGCGACAAATGGAGAAATGCTGGGCTGTTGCAGATCTGCTGCCTGGTTGTTTTGATTTTCGTGGTGTCAACGCTGGGTTGGCTAGATTGATTGGTTCGTGCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GCV_H

Protein Analysis

308

Amino Acids

34.3

Weight (kDa)

9.34

Isoelectric Point (pI)

29.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012232)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75980 AT1G75980
fragaria_vesca FvH4_3g18360
malus_domestica MD03G1242500.v1.1
prunus_persica Prupe.4G165400_v2.0.a1
pyrus_communis pycom11g23170
rosa_chinensis RchiOBHm_Chr5g0031011
rosa_laevigata RLG00000033280
rosa_multiflora Rmu_sc0001523.1_g000003
rosa_roxburghii Rroxscaffold_1G00049220 Rroxscaffold_1G00071310
rosa_rugosa Rorug05G0122300
rosa_samantha Rh4DG170500 Rh5BG214600 Rh5CG238400 Rh5DG219100
rosa_wichuraiana Rw3G027050 Rw5G019710 Rw6G016970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 790
AccII CGCG 1 cut(s) 646
AciI CCGC 3 cut(s) 646, 703, 706
AcuI CTGAAG 1 cut(s) 537
AcyI GRCGYC 1 cut(s) 787
AfaI GTAC 2 cut(s) 131, 402
AfiI CCNNNNNNNGG 2 cut(s) 387, 614
AflII CTTAAG 2 cut(s) 233, 296
AflIII ACRYGT 1 cut(s) 223
AgsI TTSAA 4 cut(s) 93, 117, 268, 715
AhlI ACTAGT 1 cut(s) 446
AjnI CCWGG 2 cut(s) 792, 862
AluBI AGCT 1 cut(s) 484
AluI AGCT 1 cut(s) 484
Alw26I GTCTC 1 cut(s) 794
AlwNI CAGNNNCTG 1 cut(s) 742
AoxI GGCC 3 cut(s) 502, 589, 632
ApeKI GCWGC 2 cut(s) 215, 859
AspLEI GCGC 2 cut(s) 315, 646
AspS9I GGNCC 2 cut(s) 68, 535
AsuHPI GGTGA 3 cut(s) 173, 445, 552
AvaII GGWCC 2 cut(s) 68, 535
AxyI CCTNAGG 1 cut(s) 18
BaeGI GKGCMC 1 cut(s) 923
BbsI GAAGAC 1 cut(s) 744
BbvI GCAGC 2 cut(s) 202, 846
BccI CCATC 3 cut(s) 453, 608, 759
BceAI ACGGC 1 cut(s) 346
BciT130I CCWGG 2 cut(s) 794, 864
BcoDI GTCTC 1 cut(s) 794
BcuI ACTAGT 1 cut(s) 446
BfaI CTAG 2 cut(s) 447, 903
BfrI CTTAAG 2 cut(s) 233, 296
BglII AGATCT 2 cut(s) 283, 853
BisI GCNGC 4 cut(s) 216, 647, 704, 860
BlsI GCNGC 4 cut(s) 217, 648, 705, 861
Bme1390I CCNGG 2 cut(s) 794, 864
Bme18I GGWCC 2 cut(s) 68, 535
BmgT120I GGNCC 2 cut(s) 68, 535
BmrFI CCNGG 2 cut(s) 794, 864
BpiI GAAGAC 1 cut(s) 744
BpuEI CTTGAG 1 cut(s) 509
Bsa29I ATCGAT 1 cut(s) 96
BsaHI GRCGYC 1 cut(s) 787
BsaJI CCNNGG 3 cut(s) 563, 635, 760
BsaWI WCCGGW 1 cut(s) 455
Bsc4I CCNNNNNNNGG 2 cut(s) 387, 614
Bse1I ACTGG 1 cut(s) 310
Bse21I CCTNAGG 1 cut(s) 18
BseBI CCWGG 2 cut(s) 794, 864
BseCI ATCGAT 1 cut(s) 96
BseDI CCNNGG 3 cut(s) 563, 635, 760
BseGI GGATG 2 cut(s) 464, 770
BseLI CCNNNNNNNGG 2 cut(s) 387, 614
BseMII CTCAG 2 cut(s) 32, 301
BseNI ACTGG 1 cut(s) 310
BseRI GAGGAG 1 cut(s) 689
BseSI GKGCMC 1 cut(s) 923
BseXI GCAGC 2 cut(s) 202, 846
BseYI CCCAGC 3 cut(s) 433, 840, 893
Bsh1236I CGCG 1 cut(s) 646
BshFI GGCC 3 cut(s) 504, 591, 634
BshVI ATCGAT 1 cut(s) 96
BsiSI CCGG 1 cut(s) 456
BslI CCNNNNNNNGG 2 cut(s) 387, 614
BsmAI GTCTC 1 cut(s) 794
BsmBI CGTCTC 1 cut(s) 794
BsmI GAATGC 1 cut(s) 364
BsnI GGCC 3 cut(s) 504, 591, 634
Bsp1286I GDGCHC 1 cut(s) 923
Bsp143I GATC 3 cut(s) 283, 695, 853
Bsp19I CCATGG 2 cut(s) 563, 760
BspACI CCGC 3 cut(s) 646, 703, 706
BspANI GGCC 3 cut(s) 504, 591, 634
BspCNI CTCAG 2 cut(s) 31, 300
BspDI ATCGAT 1 cut(s) 96
BspFNI CGCG 1 cut(s) 646
BspTI CTTAAG 2 cut(s) 233, 296
BsrI ACTGG 1 cut(s) 310
BssECI CCNNGG 3 cut(s) 563, 635, 760
BssMI GATC 3 cut(s) 283, 695, 853
BssNI GRCGYC 1 cut(s) 787
BssT1I CCWWGG 3 cut(s) 563, 635, 760
Bst2UI CCWGG 2 cut(s) 794, 864
Bst4CI ACNGT 2 cut(s) 30, 580
BstACI GRCGYC 1 cut(s) 787
BstAFI CTTAAG 2 cut(s) 233, 296
BstC8I GCNNGC 5 cut(s) 482, 506, 570, 574, 642
BstDEI CTNAG 2 cut(s) 18, 287
BstDSI CCRYGG 2 cut(s) 563, 760
BstF5I GGATG 2 cut(s) 464, 770
BstFNI CGCG 1 cut(s) 646
BstHHI GCGC 2 cut(s) 315, 646
BstKTI GATC 3 cut(s) 286, 698, 856
BstMAI GTCTC 1 cut(s) 794
BstMBI GATC 3 cut(s) 283, 695, 853
BstMWI GCNNNNNNNGC 3 cut(s) 55, 646, 899
BstNI CCWGG 2 cut(s) 794, 864
BstNSI RCATGY 1 cut(s) 227
BstSCI CCNGG 2 cut(s) 792, 862
BstSLI GKGCMC 1 cut(s) 923
BstUI CGCG 1 cut(s) 646
BstV1I GCAGC 2 cut(s) 202, 846
BstV2I GAAGAC 1 cut(s) 744
BstX2I RGATCY 2 cut(s) 283, 853
BstXI CCANNNNNNTGG 1 cut(s) 678
BstYI RGATCY 2 cut(s) 283, 853
Bsu15I ATCGAT 1 cut(s) 96
Bsu36I CCTNAGG 1 cut(s) 18
BsuRI GGCC 3 cut(s) 504, 591, 634
BsuTUI ATCGAT 1 cut(s) 96
BtgI CCRYGG 2 cut(s) 563, 760
BtsCI GGATG 2 cut(s) 464, 770
BtsIMutI CAGTG 1 cut(s) 295
Cac8I GCNNGC 5 cut(s) 482, 506, 570, 574, 642
CaiI CAGNNNCTG 1 cut(s) 742
CfoI GCGC 2 cut(s) 315, 646
Cfr13I GGNCC 2 cut(s) 68, 535
ClaI ATCGAT 1 cut(s) 96
CseI GACGC 1 cut(s) 546
Csp6I GTAC 2 cut(s) 130, 401
CspCI CAANNNNNGTGG 4 cut(s) 207, 242, 561, 596
CviAII CATG 7 cut(s) 164, 224, 371, 438, 564, 699, 761
CviQI GTAC 2 cut(s) 130, 401
DdeI CTNAG 2 cut(s) 18, 287
DpnI GATC 3 cut(s) 285, 697, 855
DpnII GATC 3 cut(s) 283, 695, 853
Eco130I CCWWGG 3 cut(s) 563, 635, 760
Eco32I GATATC 1 cut(s) 100
Eco47I GGWCC 2 cut(s) 68, 535
Eco57I CTGAAG 1 cut(s) 537
Eco81I CCTNAGG 1 cut(s) 18
EcoO109I RGGNCCY 1 cut(s) 535
EcoRII CCWGG 2 cut(s) 792, 862
EcoRV GATATC 1 cut(s) 100
EcoT14I CCWWGG 3 cut(s) 563, 635, 760
ErhI CCWWGG 3 cut(s) 563, 635, 760
Esp3I CGTCTC 1 cut(s) 794
FaeI CATG 7 cut(s) 167, 227, 374, 441, 567, 702, 764
FatI CATG 7 cut(s) 163, 223, 370, 437, 563, 698, 760
FauI CCCGC 1 cut(s) 699
Fnu4HI GCNGC 4 cut(s) 216, 647, 704, 860
FokI GGATG 2 cut(s) 471, 777
Fsp4HI GCNGC 4 cut(s) 216, 647, 704, 860
FspBI CTAG 2 cut(s) 447, 903
GlaI GCGC 2 cut(s) 314, 645
GluI GCNGC 4 cut(s) 216, 647, 704, 860
GsaI CCCAGC 3 cut(s) 437, 844, 897
HaeIII GGCC 3 cut(s) 504, 591, 634
HapII CCGG 1 cut(s) 456
HgaI GACGC 1 cut(s) 546
HhaI GCGC 2 cut(s) 315, 646
Hin1I GRCGYC 1 cut(s) 787
Hin1II CATG 7 cut(s) 167, 227, 374, 441, 567, 702, 764
Hin6I GCGC 2 cut(s) 313, 644
HinP1I GCGC 2 cut(s) 313, 644
HincII GTYRAC 1 cut(s) 889
HindII GTYRAC 1 cut(s) 889
HpaII CCGG 1 cut(s) 456
HphI GGTGA 3 cut(s) 173, 445, 552
Hpy166II GTNNAC 2 cut(s) 785, 889
Hpy188I TCNGA 2 cut(s) 283, 356
Hpy188III TCNNGA 2 cut(s) 143, 671
Hpy8I GTNNAC 2 cut(s) 785, 889
Hpy99I CGWCG 1 cut(s) 783
HpyAV CCTTC 3 cut(s) 236, 530, 561
HpyCH4III ACNGT 2 cut(s) 30, 580
HpyCH4IV ACGT 1 cut(s) 787
HpyCH4V TGCA 2 cut(s) 218, 851
HpyF10VI GCNNNNNNNGC 3 cut(s) 55, 646, 899
HpyF3I CTNAG 2 cut(s) 18, 287
HpySE526I ACGT 1 cut(s) 787
Hsp92I GRCGYC 1 cut(s) 787
Hsp92II CATG 7 cut(s) 167, 227, 374, 441, 567, 702, 764
HspAI GCGC 2 cut(s) 313, 644
Kzo9I GATC 3 cut(s) 283, 695, 853
Lsp1109I GCAGC 2 cut(s) 202, 846
MaeI CTAG 2 cut(s) 447, 903
MaeII ACGT 1 cut(s) 787
MaeIII GTNAC 4 cut(s) 22, 301, 451, 558
MalI GATC 3 cut(s) 285, 697, 855
MboI GATC 3 cut(s) 283, 695, 853
MboII GAAGA 3 cut(s) 251, 331, 744
MflI RGATCY 2 cut(s) 283, 853
MhlI GDGCHC 1 cut(s) 923
MluCI AATT 3 cut(s) 122, 137, 396
MmeI TCCRAC 2 cut(s) 253, 334
MnlI CCTC 7 cut(s) 27, 38, 381, 494, 526, 667, 785
MseI TTAA 3 cut(s) 234, 297, 540
MslI CAYNNNNRTG 1 cut(s) 369
MspCI CTTAAG 2 cut(s) 233, 296
MspI CCGG 1 cut(s) 456
MspR9I CCNGG 2 cut(s) 794, 864
Mva1269I GAATGC 1 cut(s) 364
MvaI CCWGG 2 cut(s) 794, 864
MvnI CGCG 1 cut(s) 646
MwoI GCNNNNNNNGC 3 cut(s) 55, 646, 899
NcoI CCATGG 2 cut(s) 563, 760
NdeII GATC 3 cut(s) 283, 695, 853
NlaIII CATG 7 cut(s) 167, 227, 374, 441, 567, 702, 764
NmuCI GTSAC 3 cut(s) 22, 451, 558
NspI RCATGY 1 cut(s) 227
PciI ACATGT 1 cut(s) 223
PctI GAATGC 1 cut(s) 364
PfoI TCCNGGA 1 cut(s) 792
PkrI GCNGC 4 cut(s) 217, 648, 705, 861
PpuMI RGGWCCY 1 cut(s) 535
PscI ACATGT 1 cut(s) 223
Psp5II RGGWCCY 1 cut(s) 535
Psp6I CCWGG 2 cut(s) 792, 862
PspFI CCCAGC 3 cut(s) 433, 840, 893
PspGI CCWGG 2 cut(s) 792, 862
PspPI GGNCC 2 cut(s) 68, 535
PspPPI RGGWCCY 1 cut(s) 535
PstNI CAGNNNCTG 1 cut(s) 742
PsuI RGATCY 2 cut(s) 283, 853
RsaI GTAC 2 cut(s) 131, 402
RsaNI GTAC 2 cut(s) 130, 401
RseI CAYNNNNRTG 1 cut(s) 369
SaqAI TTAA 3 cut(s) 234, 297, 540
SatI GCNGC 4 cut(s) 216, 647, 704, 860
Sau3AI GATC 3 cut(s) 283, 695, 853
Sau96I GGNCC 2 cut(s) 68, 535
ScrFI CCNGG 2 cut(s) 794, 864
SduI GDGCHC 1 cut(s) 923
SinI GGWCC 2 cut(s) 68, 535
SmiMI CAYNNNNRTG 1 cut(s) 369
SmlI CTYRAG 3 cut(s) 233, 296, 488
SmoI CTYRAG 3 cut(s) 233, 296, 488
SpeI ACTAGT 1 cut(s) 446
Sse9I AATT 3 cut(s) 122, 137, 396
SsiI CCGC 3 cut(s) 646, 703, 706
SspMI CTAG 2 cut(s) 447, 903
StyD4I CCNGG 2 cut(s) 792, 862
StyI CCWWGG 3 cut(s) 563, 635, 760
TaaI ACNGT 2 cut(s) 30, 580
TaiI ACGT 1 cut(s) 790
TaqI TCGA 3 cut(s) 96, 694, 802
TasI AATT 3 cut(s) 122, 137, 396
TauI GCSGC 2 cut(s) 649, 706
Tru1I TTAA 3 cut(s) 234, 297, 540
Tru9I TTAA 3 cut(s) 234, 297, 540
TscAI CASTG 1 cut(s) 295
TseFI GTSAC 3 cut(s) 22, 451, 558
TseI GCWGC 2 cut(s) 215, 859
Tsp45I GTSAC 3 cut(s) 22, 451, 558
TspDTI ATGAA 3 cut(s) 17, 167, 654
TspGWI ACGGA 3 cut(s) 207, 678, 767
TspRI CASTG 1 cut(s) 295
Vha464I CTTAAG 2 cut(s) 233, 296
VpaK11BI GGWCC 2 cut(s) 68, 535
XceI RCATGY 1 cut(s) 227
XspI CTAG 2 cut(s) 447, 903
ZraI GACGTC 1 cut(s) 788
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.