Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008188

Physical Location & Seq

Genomic Coordinates Forward (+)

28537593 .. 28540707

Gene Structure 3115 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G76040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGTTTGAATGCATATTAGCTAAAACTTTGGTTCTGTATTTTGAAATCCGTACAAGTAATCATCTTATATGGTTAATATTTGTAGGTAAAGTGTATAGAGATATAGTTGGGAGCGCATACTACGTTGCACCTGAAGTTCTACATCGAAACTACGGGAAAGAAATCGATGTATGGAGCGCGGGTGTTATGCTTTACATTCTTCTCAGTGGTGTTCCTCCATTTTGGGGAGAGACCGAGAAGACTATATTTGAGGCGATCTTAGAAGGAAAGCTGGATCTTGAAACTTCTCCTTGGCCTACTATATCGGAAAGCGCAAAAGATTTGATAAGAAAGATGTTGATAAGAGATCCTAAAAAAAGGATAACCGCAGCTGAAGCACTTGAGCATCCATGGATGACAGACACCAAAATTTCTGATAAACCAATCAATAGTGCTGTTCTTGTTAGGATGAAGCAATTCCGCGCGATGAACAAGCTCAAGAAACTTGCCTTGAAGGTGATAGCGGAAAACTTATCGGAAGAAGAGATAAAAGGATTAAAGCAAACGTTTAAGAACATGGATACAGATGAAAGTGGCACCATCACTTTTGATGAACTAAGAAACGGGTTACATCGTCTTGGATCTAAGCTTACGGAGTCTGAAATCAAACAACTCATGGAAGCTGCTGATGTGGACAAAAGTGGGACGATTGATTACATTGAGTTTGTAACTGCAACAATGCATCGTCATAGATTGGAGAAAGAAGAGAATTTGATAGAAGCATTTAAATACTTCGACAAAGACAGAAGCGGTTTTATCACAAGGGACGAGCTTAAACACTCCATGACTGAGTATGGCATGGGTGATGATGCGACCATAGATGAAGTTATCAATGATGTTGATACCGACAATGATGGGAGGATAAACTACGAGGAATTTGTGGCGATGATGAGGAAAGGAACTACAGATTCAGATCCAAAGCTGATCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0047484 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0080134 GO:0097305 GO:0097306 GO:0098542 GO:0140096 GO:1901000 GO:1901002 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7 Pkinase

Protein Analysis

323

Amino Acids

37.16

Weight (kDa)

5.3

Isoelectric Point (pI)

30.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	32 - 132	4.6e-28	Protein kinase domain
EF-hand_7	PF13499	178 - 239	3.6e-13	EF-hand domain pair
EF-hand_1	PF00036	179 - 205	8.9e-06	EF hand domain
EF-hand_6	PF13405	179 - 207	9.1e-06	EF-hand domain
EF-hand_8	PF13833	190 - 238	6.2e-06	EF-hand domain pair
EF-hand_7	PF13499	248 - 311	2e-17	EF-hand domain pair
EF-hand_1	PF00036	251 - 276	7.6e-07	EF hand domain
EF-hand_6	PF13405	251 - 279	1.6e-07	EF-hand domain
EF-hand_8	PF13833	263 - 312	1.5e-06	EF-hand domain pair
EF-hand_1	PF00036	286 - 312	1.7e-08	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0008188)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76040 AT1G76040 AT1G76040 AT1G76040
fragaria_vesca	FvH4_2g38010 FvH4_2g38010
malus_domestica	MD15G1007200.v1.1
prunus_persica	Prupe.1G360100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0303601
rosa_laevigata	RLG00000011069 RLG00000011734
rosa_multiflora	Rmu_ssc0000114.1_g000023
rosa_roxburghii	Rroxscaffold_7G00164590
rosa_rugosa	Rorug06G0257300 Rorug06G0322800
rosa_samantha	Rh6AG437100 Rh6BG377600 Rh6BG377700 Rh6BG466100 Rh6CG449200 Rh6DG370300 Rh6DG435900
rosa_wichuraiana	Rw6G037840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	575
AccII	CGCG	3 cut(s)	179, 462, 464
AciI	CCGC	5 cut(s)	179, 366, 460, 503, 789
AclI	AACGTT	1 cut(s)	545
AclWI	GGATC	4 cut(s)	282, 341, 628, 947
AcsI	RAATTY	3 cut(s)	408, 748, 914
AcuI	CTGAAG	2 cut(s)	153, 393
AfaI	GTAC	1 cut(s)	52
AfiI	CCNNNNNNNGG	1 cut(s)	224
AgsI	TTSAA	4 cut(s)	8, 44, 281, 493
AluBI	AGCT	8 cut(s)	20, 271, 371, 475, 628, 662, 811, 961
AluI	AGCT	8 cut(s)	20, 271, 371, 475, 628, 662, 811, 961
Alw26I	GTCTC	1 cut(s)	224
AlwI	GGATC	4 cut(s)	282, 341, 628, 947
AoxI	GGCC	1 cut(s)	293
ApeKI	GCWGC	2 cut(s)	368, 662
ApoI	RAATTY	3 cut(s)	408, 748, 914
Asp700I	GAANNNNTTC	1 cut(s)	455
AspLEI	GCGC	4 cut(s)	116, 179, 314, 464
AsuHPI	GGTGA	2 cut(s)	508, 854
BanI	GGYRCC	1 cut(s)	575
BbsI	GAAGAC	1 cut(s)	245
BbvI	GCAGC	2 cut(s)	380, 649
BccI	CCATC	2 cut(s)	587, 887
BciVI	GTATCC	1 cut(s)	553
BclI	TGATCA	1 cut(s)	963
BcoDI	GTCTC	1 cut(s)	224
BfmI	CTRYAG	1 cut(s)	942
BfuI	GTATCC	1 cut(s)	553
BisI	GCNGC	2 cut(s)	369, 663
BlsI	GCNGC	2 cut(s)	370, 664
BmiI	GGNNCC	1 cut(s)	577
BmsI	GCATC	3 cut(s)	394, 730, 838
BpiI	GAAGAC	1 cut(s)	245
BpuEI	CTTGAG	2 cut(s)	401, 461
Bsa29I	ATCGAT	1 cut(s)	165
BsaBI	GATNNNNATC	1 cut(s)	951
BsaI	GGTCTC	1 cut(s)	224
BsaJI	CCNNGG	2 cut(s)	290, 389
BsaXI	ACNNNNNCTCC	2 cut(s)	166, 196
Bsc4I	CCNNNNNNNGG	1 cut(s)	224
Bse8I	GATNNNNATC	1 cut(s)	951
BseCI	ATCGAT	1 cut(s)	165
BseDI	CCNNGG	2 cut(s)	290, 389
BseGI	GGATG	3 cut(s)	385, 399, 453
BseJI	GATNNNNATC	1 cut(s)	951
BseLI	CCNNNNNNNGG	1 cut(s)	224
BseMII	CTCAG	2 cut(s)	217, 819
BseXI	GCAGC	2 cut(s)	380, 649
Bsh1236I	CGCG	3 cut(s)	179, 462, 464
BshFI	GGCC	1 cut(s)	295
BshNI	GGYRCC	1 cut(s)	575
BshVI	ATCGAT	1 cut(s)	165
BslFI	GGGAC	2 cut(s)	697, 818
BslI	CCNNNNNNNGG	1 cut(s)	224
BsmAI	GTCTC	1 cut(s)	224
BsmFI	GGGAC	2 cut(s)	697, 818
BsmI	GAATGC	1 cut(s)	14
BsnI	GGCC	1 cut(s)	295
Bso31I	GGTCTC	1 cut(s)	224
Bsp143I	GATC	6 cut(s)	255, 274, 346, 620, 952, 963
Bsp19I	CCATGG	1 cut(s)	389
BspACI	CCGC	5 cut(s)	179, 366, 460, 503, 789
BspANI	GGCC	1 cut(s)	295
BspCNI	CTCAG	2 cut(s)	216, 820
BspDI	ATCGAT	1 cut(s)	165
BspFNI	CGCG	3 cut(s)	179, 462, 464
BspLI	GGNNCC	1 cut(s)	577
BspPI	GGATC	4 cut(s)	282, 341, 628, 947
BspT107I	GGYRCC	1 cut(s)	575
BspTNI	GGTCTC	1 cut(s)	224
BssECI	CCNNGG	2 cut(s)	290, 389
BssMI	GATC	6 cut(s)	255, 274, 346, 620, 952, 963
BssT1I	CCWWGG	2 cut(s)	290, 389
Bst6I	CTCTTC	2 cut(s)	516, 738
BstDEI	CTNAG	5 cut(s)	203, 259, 596, 624, 828
BstDSI	CCRYGG	1 cut(s)	389
BstF5I	GGATG	3 cut(s)	385, 399, 453
BstFNI	CGCG	3 cut(s)	179, 462, 464
BstHHI	GCGC	4 cut(s)	116, 179, 314, 464
BstKTI	GATC	6 cut(s)	258, 277, 349, 623, 955, 966
BstMAI	GTCTC	1 cut(s)	224
BstMBI	GATC	6 cut(s)	255, 274, 346, 620, 952, 963
BstMWI	GCNNNNNNNGC	1 cut(s)	374
BstSFI	CTRYAG	1 cut(s)	942
BstUI	CGCG	3 cut(s)	179, 462, 464
BstV1I	GCAGC	2 cut(s)	380, 649
BstV2I	GAAGAC	1 cut(s)	245
BstX2I	RGATCY	4 cut(s)	274, 346, 620, 952
BstYI	RGATCY	4 cut(s)	274, 346, 620, 952
Bsu15I	ATCGAT	1 cut(s)	165
BsuI	GTATCC	1 cut(s)	553
BsuRI	GGCC	1 cut(s)	295
BsuTUI	ATCGAT	1 cut(s)	165
BtgI	CCRYGG	1 cut(s)	389
BtgZI	GCGATG	2 cut(s)	479, 938
BtsCI	GGATG	3 cut(s)	385, 399, 453
BtsIMutI	CAGTG	1 cut(s)	211
CfoI	GCGC	4 cut(s)	116, 179, 314, 464
ClaI	ATCGAT	1 cut(s)	165
Csp6I	GTAC	1 cut(s)	51
CviAII	CATG	5 cut(s)	390, 556, 655, 823, 838
CviJI	RGCY	9 cut(s)	20, 271, 295, 371, 475, 628, 662, 811, 961
CviKI_1	RGCY	9 cut(s)	20, 271, 295, 371, 475, 628, 662, 811, 961
CviQI	GTAC	1 cut(s)	51
DdeI	CTNAG	5 cut(s)	203, 259, 596, 624, 828
DpnI	GATC	6 cut(s)	257, 276, 348, 622, 954, 965
DpnII	GATC	6 cut(s)	255, 274, 346, 620, 952, 963
DraI	TTTAAA	1 cut(s)	766
Eam1104I	CTCTTC	2 cut(s)	516, 738
EarI	CTCTTC	2 cut(s)	516, 738
Eco130I	CCWWGG	2 cut(s)	290, 389
Eco31I	GGTCTC	1 cut(s)	224
Eco57I	CTGAAG	2 cut(s)	153, 393
EcoT14I	CCWWGG	2 cut(s)	290, 389
EcoT22I	ATGCAT	2 cut(s)	14, 723
ErhI	CCWWGG	2 cut(s)	290, 389
FaeI	CATG	5 cut(s)	393, 559, 658, 826, 841
FaqI	GGGAC	2 cut(s)	697, 818
FatI	CATG	5 cut(s)	389, 555, 654, 822, 837
FauI	CCCGC	1 cut(s)	172
FbaI	TGATCA	1 cut(s)	963
Fnu4HI	GCNGC	2 cut(s)	369, 663
FokI	GGATG	3 cut(s)	372, 406, 460
Fsp4HI	GCNGC	2 cut(s)	369, 663
GlaI	GCGC	4 cut(s)	115, 178, 313, 463
GluI	GCNGC	2 cut(s)	369, 663
HaeIII	GGCC	1 cut(s)	295
HhaI	GCGC	4 cut(s)	116, 179, 314, 464
Hin1II	CATG	5 cut(s)	393, 559, 658, 826, 841
Hin6I	GCGC	4 cut(s)	114, 177, 312, 462
HinP1I	GCGC	4 cut(s)	114, 177, 312, 462
HindIII	AAGCTT	1 cut(s)	626
HinfI	GANTC	2 cut(s)	635, 947
HphI	GGTGA	2 cut(s)	508, 854
Hpy166II	GTNNAC	1 cut(s)	673
Hpy188I	TCNGA	6 cut(s)	307, 415, 517, 640, 952, 968
Hpy188III	TCNNGA	2 cut(s)	278, 478
Hpy8I	GTNNAC	1 cut(s)	673
HpyAV	CCTTC	2 cut(s)	257, 487
HpyCH4IV	ACGT	2 cut(s)	123, 545
HpyCH4V	TGCA	4 cut(s)	12, 128, 713, 721
HpyF10VI	GCNNNNNNNGC	1 cut(s)	374
HpyF3I	CTNAG	5 cut(s)	203, 259, 596, 624, 828
HpySE526I	ACGT	2 cut(s)	123, 545
Hsp92II	CATG	5 cut(s)	393, 559, 658, 826, 841
HspAI	GCGC	4 cut(s)	114, 177, 312, 462
Ksp22I	TGATCA	1 cut(s)	963
Kzo9I	GATC	6 cut(s)	255, 274, 346, 620, 952, 963
LmnI	GCTCC	2 cut(s)	111, 174
LpnPI	CCDG	2 cut(s)	144, 257
Lsp1109I	GCAGC	2 cut(s)	380, 649
LweI	GCATC	3 cut(s)	394, 730, 838
MaeII	ACGT	2 cut(s)	123, 545
MaeIII	GTNAC	2 cut(s)	606, 706
MalI	GATC	6 cut(s)	257, 276, 348, 622, 954, 965
MboI	GATC	6 cut(s)	255, 274, 346, 620, 952, 963
MboII	GAAGA	5 cut(s)	191, 250, 530, 533, 755
MflI	RGATCY	4 cut(s)	274, 346, 620, 952
MluCI	AATT	4 cut(s)	408, 455, 748, 914
MlyI	GAGTC	1 cut(s)	644
MnlI	CCTC	5 cut(s)	225, 244, 891, 904, 924
Mph1103I	ATGCAT	2 cut(s)	14, 723
MroXI	GAANNNNTTC	1 cut(s)	455
MseI	TTAA	5 cut(s)	74, 536, 549, 765, 813
MspA1I	CMGCKG	1 cut(s)	371
Mva1269I	GAATGC	1 cut(s)	14
MvnI	CGCG	3 cut(s)	179, 462, 464
MwoI	GCNNNNNNNGC	1 cut(s)	374
NcoI	CCATGG	1 cut(s)	389
NdeII	GATC	6 cut(s)	255, 274, 346, 620, 952, 963
NlaIII	CATG	5 cut(s)	393, 559, 658, 826, 841
NlaIV	GGNNCC	1 cut(s)	577
NsiI	ATGCAT	2 cut(s)	14, 723
PctI	GAATGC	1 cut(s)	14
PdmI	GAANNNNTTC	1 cut(s)	455
PfeI	GAWTC	1 cut(s)	947
PkrI	GCNGC	2 cut(s)	370, 664
PleI	GAGTC	1 cut(s)	643
PpsI	GAGTC	1 cut(s)	643
Psp1406I	AACGTT	1 cut(s)	545
PspN4I	GGNNCC	1 cut(s)	577
PsuI	RGATCY	4 cut(s)	274, 346, 620, 952
PvuII	CAGCTG	1 cut(s)	371
RsaI	GTAC	1 cut(s)	52
RsaNI	GTAC	1 cut(s)	51
SaqAI	TTAA	5 cut(s)	74, 536, 549, 765, 813
SatI	GCNGC	2 cut(s)	369, 663
Sau3AI	GATC	6 cut(s)	255, 274, 346, 620, 952, 963
SchI	GAGTC	1 cut(s)	644
SfaNI	GCATC	3 cut(s)	394, 730, 838
SfcI	CTRYAG	1 cut(s)	942
SmiI	ATTTAAAT	1 cut(s)	766
SmlI	CTYRAG	2 cut(s)	380, 476
SmoI	CTYRAG	2 cut(s)	380, 476
Sse9I	AATT	4 cut(s)	408, 455, 748, 914
SsiI	CCGC	5 cut(s)	179, 366, 460, 503, 789
SspI	AATATT	1 cut(s)	78
StyI	CCWWGG	2 cut(s)	290, 389
SwaI	ATTTAAAT	1 cut(s)	766
TaiI	ACGT	2 cut(s)	126, 548
TaqI	TCGA	3 cut(s)	145, 165, 774
TaqII	GACCGA	1 cut(s)	248
TasI	AATT	4 cut(s)	408, 455, 748, 914
TfiI	GAWTC	1 cut(s)	947
Tru1I	TTAA	5 cut(s)	74, 536, 549, 765, 813
Tru9I	TTAA	5 cut(s)	74, 536, 549, 765, 813
TscAI	CASTG	1 cut(s)	211
TseI	GCWGC	2 cut(s)	368, 662
TspDTI	ATGAA	5 cut(s)	464, 482, 582, 606, 876
TspGWI	ACGGA	2 cut(s)	38, 647
TspRI	CASTG	1 cut(s)	211
XapI	RAATTY	3 cut(s)	408, 748, 914
XmnI	GAANNNNTTC	1 cut(s)	455
Zsp2I	ATGCAT	2 cut(s)	14, 723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.