Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0008188

Physical Location & Seq

Genomic Coordinates Forward (+)

60656537 .. 60659425

Gene Structure 2889 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG377700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGGAGTGATGCATAGGGATTTGAAGCCTGAGAATTTCTGGGTTGTAAGTAAGGATGGGGATGCACCCATAAAGGCCATTCTGTCTTCATCGAGCAAGCAAGAGACCGAGAAAGGGATATTTTACTCAATTATAGAAGGAAAACTTGACTTGCATAGTGCGCCATGGCCTTCTATATCTGATGCGGCAAAGGATCTCATCAGGAAAATGTTAACAATGGACCCTAAGAAAAGGATTACAGCTGCTGACGTTCTTGAGCATCAATGGATGAAGAAAGATGGTGAAGCATCTGACAAACCGATTGATAGTGCTTTGCTGATTAGGATGAAACAGTTCGGAGCAATGAACAAGTTGAAGAAACTTGCTCTAAAGGTCATAGCAGAAACGCTTTCTGAAGAAGAGATTCATGGCCTGAAACAAATGTTCAACAACATTGACACAGATGGTAGTGGTAATATCACAGTTGAAGAACTAAGAACTGGATTGTCAAGGCTGGGATCTAAGCTTACAGAAGCAGAAATAAAGCAGCTGATGGGTGCTGCTGACATAGACAATAATGGGACTATTGATTACACTGAATTCATTACTGCAACCATGAATCGACACAAACTGGAGAAGGAAGAAAACTTGTACAAGGCTTTCCTTTACTTTGACAAGGATCAGAGCGGGTTTATCACAAGAGATGAGCTAAGACAAGCAATGACTGAATATGGGATGGGGGATGAGGCTACGATAGATGAAGTCCTTGAAGATGTGGATACTGATAAAGATGGGAGAATCAGTTATGAGGAGTTCGTAGCCATGATGACACGGGGGGTTGCAGATTACGATGATGAACCAGATAGGGTGATTGTTCTACCTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0047484 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0080134 GO:0097305 GO:0097306 GO:0098542 GO:0140096 GO:1901000 GO:1901002 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7 Pkinase

Protein Analysis

288

Amino Acids

32.52

Weight (kDa)

4.79

Isoelectric Point (pI)

37.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	36 - 90	4.5e-09	Protein kinase domain
EF-hand_7	PF13499	138 - 198	1.7e-14	EF-hand domain pair
EF-hand_1	PF00036	138 - 164	2.4e-06	EF hand domain
EF-hand_6	PF13405	138 - 166	4.4e-06	EF-hand domain
EF-hand_5	PF13202	138 - 160	3.7e-06	EF hand
EF-hand_8	PF13833	150 - 197	3.1e-07	EF-hand domain pair
EF-hand_7	PF13499	207 - 270	3.7e-17	EF-hand domain pair
EF-hand_6	PF13405	210 - 238	1.6e-07	EF-hand domain
EF-hand_1	PF00036	211 - 236	8.7e-07	EF hand domain
EF-hand_8	PF13833	222 - 271	1e-06	EF-hand domain pair
EF-hand_1	PF00036	245 - 271	7.8e-08	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0008188)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76040 AT1G76040 AT1G76040 AT1G76040
fragaria_vesca	FvH4_2g38010 FvH4_2g38010
malus_domestica	MD15G1007200.v1.1
prunus_persica	Prupe.1G360100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0303601
rosa_laevigata	RLG00000011069 RLG00000011734
rosa_multiflora	Rmu_ssc0000114.1_g000023
rosa_roxburghii	Rroxscaffold_7G00164590
rosa_rugosa	Rorug06G0257300 Rorug06G0322800
rosa_samantha	Rh6AG437100 Rh6BG377600 Rh6BG377700 Rh6BG466100 Rh6CG449200 Rh6DG370300 Rh6DG435900
rosa_wichuraiana	Rw6G037840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	666
AciI	CCGC	2 cut(s)	185, 666
AclWI	GGATC	3 cut(s)	201, 505, 666
AcsI	RAATTY	2 cut(s)	34, 578
AcuI	CTGAAG	1 cut(s)	414
AfaI	GTAC	1 cut(s)	632
AfiI	CCNNNNNNNGG	1 cut(s)	114
AgsI	TTSAA	5 cut(s)	25, 355, 427, 467, 749
AluBI	AGCT	4 cut(s)	242, 505, 529, 688
AluI	AGCT	4 cut(s)	242, 505, 529, 688
Alw26I	GTCTC	1 cut(s)	98
AlwI	GGATC	3 cut(s)	201, 505, 666
AlwNI	CAGNNNCTG	1 cut(s)	245
AoxI	GGCC	3 cut(s)	75, 167, 409
ApeKI	GCWGC	3 cut(s)	242, 526, 539
ApoI	RAATTY	2 cut(s)	34, 578
Asp700I	GAANNNNTTC	2 cut(s)	332, 402
AspLEI	GCGC	1 cut(s)	163
AspS9I	GGNCC	1 cut(s)	220
AsuHPI	GGTGA	2 cut(s)	293, 859
AvaII	GGWCC	1 cut(s)	220
BbsI	GAAGAC	1 cut(s)	78
BbvI	GCAGC	3 cut(s)	229, 526, 538
BccI	CCATC	6 cut(s)	50, 272, 437, 526, 709, 764
BciVI	GTATCC	1 cut(s)	751
BcoDI	GTCTC	1 cut(s)	98
BfuI	GTATCC	1 cut(s)	751
BisI	GCNGC	4 cut(s)	186, 243, 527, 540
BlsI	GCNGC	4 cut(s)	187, 244, 528, 541
Bme18I	GGWCC	1 cut(s)	220
BmgT120I	GGNCC	1 cut(s)	220
BmiI	GGNNCC	1 cut(s)	222
BmsI	GCATC	4 cut(s)	52, 172, 268, 296
BpiI	GAAGAC	1 cut(s)	78
BpmI	CTGGAG	1 cut(s)	632
BpuEI	CTTGAG	1 cut(s)	275
BsaI	GGTCTC	1 cut(s)	98
BsaJI	CCNNGG	1 cut(s)	164
BsaXI	ACNNNNNCTCC	2 cut(s)	766, 796
Bsc4I	CCNNNNNNNGG	1 cut(s)	114
Bse1I	ACTGG	2 cut(s)	484, 615
Bse3DI	GCAATG	2 cut(s)	348, 705
BseDI	CCNNGG	1 cut(s)	164
BseGI	GGATG	6 cut(s)	61, 67, 273, 330, 720, 727
BseLI	CCNNNNNNNGG	1 cut(s)	114
BseMI	GCAATG	2 cut(s)	348, 705
BseMII	CTCAG	1 cut(s)	21
BseNI	ACTGG	2 cut(s)	484, 615
BseRI	GAGGAG	1 cut(s)	803
BseXI	GCAGC	3 cut(s)	229, 526, 538
BseYI	CCCAGC	1 cut(s)	493
BshFI	GGCC	3 cut(s)	77, 169, 411
BslFI	GGGAC	1 cut(s)	574
BslI	CCNNNNNNNGG	1 cut(s)	114
BsmAI	GTCTC	1 cut(s)	98
BsmFI	GGGAC	1 cut(s)	574
BsnI	GGCC	3 cut(s)	77, 169, 411
Bso31I	GGTCTC	1 cut(s)	98
Bsp1407I	TGTACA	1 cut(s)	630
Bsp143I	GATC	3 cut(s)	193, 497, 658
Bsp19I	CCATGG	1 cut(s)	164
BspACI	CCGC	2 cut(s)	185, 666
BspANI	GGCC	3 cut(s)	77, 169, 411
BspCNI	CTCAG	1 cut(s)	22
BspLI	GGNNCC	1 cut(s)	222
BspPI	GGATC	3 cut(s)	201, 505, 666
BspTNI	GGTCTC	1 cut(s)	98
BsrBI	CCGCTC	1 cut(s)	666
BsrDI	GCAATG	2 cut(s)	348, 705
BsrGI	TGTACA	1 cut(s)	630
BsrI	ACTGG	2 cut(s)	484, 615
BssECI	CCNNGG	1 cut(s)	164
BssMI	GATC	3 cut(s)	193, 497, 658
BssT1I	CCWWGG	1 cut(s)	164
Bst4CI	ACNGT	2 cut(s)	333, 463
Bst6I	CTCTTC	1 cut(s)	393
BstAUI	TGTACA	1 cut(s)	630
BstC8I	GCNNGC	1 cut(s)	98
BstDEI	CTNAG	5 cut(s)	30, 225, 473, 501, 689
BstDSI	CCRYGG	1 cut(s)	164
BstF5I	GGATG	6 cut(s)	61, 67, 273, 330, 720, 727
BstHHI	GCGC	1 cut(s)	163
BstKTI	GATC	3 cut(s)	196, 500, 661
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	3 cut(s)	193, 497, 658
BstMWI	GCNNNNNNNGC	1 cut(s)	160
BstV1I	GCAGC	3 cut(s)	229, 526, 538
BstV2I	GAAGAC	1 cut(s)	78
BstX2I	RGATCY	2 cut(s)	193, 497
BstYI	RGATCY	2 cut(s)	193, 497
BsuI	GTATCC	1 cut(s)	751
BsuRI	GGCC	3 cut(s)	77, 169, 411
BtgI	CCRYGG	1 cut(s)	164
BtsCI	GGATG	6 cut(s)	61, 67, 273, 330, 720, 727
BtsIMutI	CAGTG	1 cut(s)	573
Cac8I	GCNNGC	1 cut(s)	98
CaiI	CAGNNNCTG	1 cut(s)	245
CfoI	GCGC	1 cut(s)	163
Cfr13I	GGNCC	1 cut(s)	220
Csp6I	GTAC	1 cut(s)	631
CviAII	CATG	4 cut(s)	165, 407, 595, 802
CviQI	GTAC	1 cut(s)	631
DdeI	CTNAG	5 cut(s)	30, 225, 473, 501, 689
DpnI	GATC	3 cut(s)	195, 499, 660
DpnII	GATC	3 cut(s)	193, 497, 658
Eam1104I	CTCTTC	1 cut(s)	393
EarI	CTCTTC	1 cut(s)	393
Eco130I	CCWWGG	1 cut(s)	164
Eco31I	GGTCTC	1 cut(s)	98
Eco47I	GGWCC	1 cut(s)	220
Eco57I	CTGAAG	1 cut(s)	414
EcoRI	GAATTC	1 cut(s)	578
EcoT14I	CCWWGG	1 cut(s)	164
EcoT22I	ATGCAT	1 cut(s)	15
ErhI	CCWWGG	1 cut(s)	164
FaeI	CATG	4 cut(s)	168, 410, 598, 805
FalI	AAGNNNNNCTT	2 cut(s)	129, 161
FaqI	GGGAC	1 cut(s)	574
FatI	CATG	4 cut(s)	164, 406, 594, 801
FauI	CCCGC	1 cut(s)	659
Fnu4HI	GCNGC	4 cut(s)	186, 243, 527, 540
FokI	GGATG	6 cut(s)	68, 74, 280, 337, 727, 734
Fsp4HI	GCNGC	4 cut(s)	186, 243, 527, 540
GlaI	GCGC	1 cut(s)	162
GluI	GCNGC	4 cut(s)	186, 243, 527, 540
GsaI	CCCAGC	1 cut(s)	497
GsuI	CTGGAG	1 cut(s)	632
HaeIII	GGCC	3 cut(s)	77, 169, 411
HhaI	GCGC	1 cut(s)	163
Hin1II	CATG	4 cut(s)	168, 410, 598, 805
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HincII	GTYRAC	1 cut(s)	213
HindII	GTYRAC	1 cut(s)	213
HindIII	AAGCTT	1 cut(s)	503
HinfI	GANTC	3 cut(s)	403, 598, 777
HpaI	GTTAAC	1 cut(s)	213
HphI	GGTGA	2 cut(s)	293, 859
Hpy166II	GTNNAC	1 cut(s)	213
Hpy188I	TCNGA	5 cut(s)	181, 292, 338, 394, 663
Hpy188III	TCNNGA	2 cut(s)	202, 254
Hpy8I	GTNNAC	1 cut(s)	213
HpyAV	CCTTC	3 cut(s)	131, 180, 610
HpyCH4III	ACNGT	2 cut(s)	333, 463
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	5 cut(s)	13, 65, 154, 590, 821
HpyF10VI	GCNNNNNNNGC	1 cut(s)	160
HpyF3I	CTNAG	5 cut(s)	30, 225, 473, 501, 689
HpySE526I	ACGT	1 cut(s)	249
Hsp92II	CATG	4 cut(s)	168, 410, 598, 805
HspAI	GCGC	1 cut(s)	161
KspAI	GTTAAC	1 cut(s)	213
Kzo9I	GATC	3 cut(s)	193, 497, 658
LmnI	GCTCC	1 cut(s)	338
LpnPI	CCDG	8 cut(s)	25, 42, 187, 425, 465, 479, 596, 852
Lsp1109I	GCAGC	3 cut(s)	229, 526, 538
LweI	GCATC	4 cut(s)	52, 172, 268, 296
MaeII	ACGT	1 cut(s)	249
MalI	GATC	3 cut(s)	195, 499, 660
MbiI	CCGCTC	1 cut(s)	666
MboI	GATC	3 cut(s)	193, 497, 658
MboII	GAAGA	8 cut(s)	78, 283, 367, 407, 410, 479, 632, 761
MflI	RGATCY	2 cut(s)	193, 497
MluCI	AATT	3 cut(s)	34, 129, 578
MnlI	CCTC	2 cut(s)	718, 781
Mph1103I	ATGCAT	1 cut(s)	15
MroXI	GAANNNNTTC	2 cut(s)	332, 402
MseI	TTAA	1 cut(s)	212
MspA1I	CMGCKG	2 cut(s)	242, 529
MwoI	GCNNNNNNNGC	1 cut(s)	160
NcoI	CCATGG	1 cut(s)	164
NdeII	GATC	3 cut(s)	193, 497, 658
NlaIII	CATG	4 cut(s)	168, 410, 598, 805
NlaIV	GGNNCC	1 cut(s)	222
NsiI	ATGCAT	1 cut(s)	15
PdmI	GAANNNNTTC	2 cut(s)	332, 402
PfeI	GAWTC	3 cut(s)	403, 598, 777
PkrI	GCNGC	4 cut(s)	187, 244, 528, 541
PspFI	CCCAGC	1 cut(s)	493
PspN4I	GGNNCC	1 cut(s)	222
PspPI	GGNCC	1 cut(s)	220
PstNI	CAGNNNCTG	1 cut(s)	245
PsuI	RGATCY	2 cut(s)	193, 497
PvuII	CAGCTG	2 cut(s)	242, 529
RsaI	GTAC	1 cut(s)	632
RsaNI	GTAC	1 cut(s)	631
SaqAI	TTAA	1 cut(s)	212
SatI	GCNGC	4 cut(s)	186, 243, 527, 540
Sau3AI	GATC	3 cut(s)	193, 497, 658
Sau96I	GGNCC	1 cut(s)	220
SetI	ASST	7 cut(s)	244, 252, 375, 507, 531, 690, 862
SfaNI	GCATC	4 cut(s)	52, 172, 268, 296
SinI	GGWCC	1 cut(s)	220
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	3 cut(s)	34, 129, 578
SsiI	CCGC	2 cut(s)	185, 666
StyI	CCWWGG	1 cut(s)	164
TaaI	ACNGT	2 cut(s)	333, 463
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	2 cut(s)	92, 601
TaqII	GACCGA	1 cut(s)	122
TasI	AATT	3 cut(s)	34, 129, 578
TatI	WGTACW	1 cut(s)	630
TauI	GCSGC	1 cut(s)	188
TfiI	GAWTC	3 cut(s)	403, 598, 777
Tru1I	TTAA	1 cut(s)	212
Tru9I	TTAA	1 cut(s)	212
TscAI	CASTG	1 cut(s)	580
TseI	GCWGC	3 cut(s)	242, 526, 539
TspDTI	ATGAA	9 cut(s)	78, 284, 341, 359, 395, 571, 611, 753, 849
TspRI	CASTG	1 cut(s)	580
VpaK11BI	GGWCC	1 cut(s)	220
XapI	RAATTY	2 cut(s)	34, 578
XmnI	GAANNNNTTC	2 cut(s)	332, 402
Zsp2I	ATGCAT	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.