Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0008188

Physical Location & Seq

Genomic Coordinates Forward (+)

56616042 .. 56625549

Gene Structure 9508 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG370300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGCATAGGGATTTGAAGCCTGAGAATTTCTGGCTTGTAAGTAAGGATGGGGATGCACCCATAAAGGCCATTCTGTCTTCATCGAGCAAGCAAGAGACCGAGAAAGGGATATTTTACTCAATTATAGAAGGAAAACTTGACTTGCATAGTGCGCCATGGCCTTCTATATCTGATGCGGCAAAGGATCTCATCAGGAAAATGTTAACAATGGACCCTAAGAAAAGGATTACAGCTGCTGACGTTCTTGAGCATCAATGGATGAAGAAAGATGGTGAAGCATCTGACAAACCGATTGATAGTGCTTTGCTGATTAGGATGAAACAGTTCGGAGCAATGAACAAGTTGAAGAAACTTGCTCTAAAGGTCATAGCAGAAACGCTTTCTGAAGAAGAGATTCATGGCCTGAAACAAATGTTCAACAACATTGACACAGATGGTAGTGGTAATATCACAGTTGAAGAACTAAGAACTGGATTGTCAAGGCTGGGATCTAAGCTTACAGAAGCAGAAATAAAGCAGCTGATGGTCACTCTATCCCATTCGGTCACATTTGATATACATGTGCACCAAAGAGGATTGCACAAACGAATCCAAACCAAACCCGGAAGCAAAGGAAATCGCATGGACCTGTTTCGCGGACTGCGAAGATTGCAATCCGGCACAGGCCTTGACTACACTGGGGAAGAGGAAGCTACCAGGACGAGACCCCGAGATAACATTTGGGAGAACAAGGCAAGTGCATTGCCGAAGCTATTGAGCTTTGAGAAGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0047484 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0080134 GO:0097305 GO:0097306 GO:0098542 GO:0140096 GO:1901000 GO:1901002 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7 Pkinase

Protein Analysis

257

Amino Acids

28.96

Weight (kDa)

9.32

Isoelectric Point (pI)

46.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	33 - 87	3.7e-09	Protein kinase domain
EF-hand_1	PF00036	135 - 161	2e-06	EF hand domain
EF-hand_7	PF13499	135 - 177	2e-06	EF-hand domain pair
EF-hand_6	PF13405	135 - 163	3.8e-06	EF-hand domain
EF-hand_5	PF13202	135 - 157	3.1e-06	EF hand

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008188)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76040 AT1G76040 AT1G76040 AT1G76040
fragaria_vesca	FvH4_2g38010 FvH4_2g38010
malus_domestica	MD15G1007200.v1.1
prunus_persica	Prupe.1G360100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0303601
rosa_laevigata	RLG00000011069 RLG00000011734
rosa_multiflora	Rmu_ssc0000114.1_g000023
rosa_roxburghii	Rroxscaffold_7G00164590
rosa_rugosa	Rorug06G0257300 Rorug06G0322800
rosa_samantha	Rh6AG437100 Rh6BG377600 Rh6BG377700 Rh6BG466100 Rh6CG449200 Rh6DG370300 Rh6DG435900
rosa_wichuraiana	Rw6G037840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	636
AciI	CCGC	2 cut(s)	176, 636
AclWI	GGATC	2 cut(s)	192, 496
AcsI	RAATTY	1 cut(s)	25
AcuI	CTGAAG	1 cut(s)	405
AfiI	CCNNNNNNNGG	1 cut(s)	105
AflIII	ACRYGT	1 cut(s)	559
AgsI	TTSAA	4 cut(s)	16, 346, 418, 458
AjnI	CCWGG	1 cut(s)	695
AluBI	AGCT	6 cut(s)	233, 496, 520, 692, 751, 759
AluI	AGCT	6 cut(s)	233, 496, 520, 692, 751, 759
Alw21I	GWGCWC	1 cut(s)	567
Alw26I	GTCTC	2 cut(s)	89, 697
Alw44I	GTGCAC	1 cut(s)	563
AlwI	GGATC	2 cut(s)	192, 496
AlwNI	CAGNNNCTG	1 cut(s)	236
Ama87I	CYCGRG	1 cut(s)	708
AoxI	GGCC	4 cut(s)	66, 158, 400, 664
ApaLI	GTGCAC	1 cut(s)	563
ApeKI	GCWGC	2 cut(s)	233, 517
ApoI	RAATTY	1 cut(s)	25
Asp700I	GAANNNNTTC	2 cut(s)	323, 393
AspLEI	GCGC	1 cut(s)	154
AspS9I	GGNCC	2 cut(s)	211, 625
AsuC2I	CCSGG	1 cut(s)	603
AsuHPI	GGTGA	1 cut(s)	284
AvaI	CYCGRG	1 cut(s)	708
AvaII	GGWCC	2 cut(s)	211, 625
BaeGI	GKGCMC	1 cut(s)	567
BbsI	GAAGAC	1 cut(s)	69
Bbv12I	GWGCWC	1 cut(s)	567
BbvI	GCAGC	2 cut(s)	220, 529
BccI	CCATC	4 cut(s)	41, 263, 428, 517
BciT130I	CCWGG	1 cut(s)	697
BcnI	CCSGG	1 cut(s)	603
BcoDI	GTCTC	2 cut(s)	89, 697
BisI	GCNGC	3 cut(s)	177, 234, 518
BlsI	GCNGC	3 cut(s)	178, 235, 519
Bme1390I	CCNGG	2 cut(s)	603, 697
Bme18I	GGWCC	2 cut(s)	211, 625
BmeT110I	CYCGRG	1 cut(s)	708
BmgT120I	GGNCC	2 cut(s)	211, 625
BmiI	GGNNCC	1 cut(s)	213
BmrFI	CCNGG	2 cut(s)	603, 697
BmrI	ACTGGG	1 cut(s)	687
BmsI	GCATC	4 cut(s)	43, 163, 259, 287
BmuI	ACTGGG	1 cut(s)	687
BpiI	GAAGAC	1 cut(s)	69
BpuEI	CTTGAG	1 cut(s)	266
BpuMI	CCSGG	1 cut(s)	603
BsaBI	GATNNNNATC	1 cut(s)	652
BsaI	GGTCTC	2 cut(s)	89, 697
BsaJI	CCNNGG	1 cut(s)	155
Bsc4I	CCNNNNNNNGG	1 cut(s)	105
Bse1I	ACTGG	2 cut(s)	475, 682
Bse3DI	GCAATG	2 cut(s)	339, 740
Bse8I	GATNNNNATC	1 cut(s)	652
BseBI	CCWGG	1 cut(s)	697
BseDI	CCNNGG	1 cut(s)	155
BseGI	GGATG	4 cut(s)	52, 58, 264, 321
BseJI	GATNNNNATC	1 cut(s)	652
BseLI	CCNNNNNNNGG	1 cut(s)	105
BseMI	GCAATG	2 cut(s)	339, 740
BseMII	CTCAG	1 cut(s)	12
BseNI	ACTGG	2 cut(s)	475, 682
BseSI	GKGCMC	1 cut(s)	567
BseXI	GCAGC	2 cut(s)	220, 529
BseYI	CCCAGC	1 cut(s)	484
Bsh1236I	CGCG	1 cut(s)	636
BshFI	GGCC	4 cut(s)	68, 160, 402, 666
BsiHKAI	GWGCWC	1 cut(s)	567
BsiHKCI	CYCGRG	1 cut(s)	708
BsiSI	CCGG	2 cut(s)	603, 657
BslI	CCNNNNNNNGG	1 cut(s)	105
BsmAI	GTCTC	2 cut(s)	89, 697
BsnI	GGCC	4 cut(s)	68, 160, 402, 666
Bso31I	GGTCTC	2 cut(s)	89, 697
BsoBI	CYCGRG	1 cut(s)	708
Bsp1286I	GDGCHC	1 cut(s)	567
Bsp143I	GATC	2 cut(s)	184, 488
Bsp19I	CCATGG	1 cut(s)	155
BspACI	CCGC	2 cut(s)	176, 636
BspANI	GGCC	4 cut(s)	68, 160, 402, 666
BspCNI	CTCAG	1 cut(s)	13
BspFNI	CGCG	1 cut(s)	636
BspLI	GGNNCC	1 cut(s)	213
BspPI	GGATC	2 cut(s)	192, 496
BspTNI	GGTCTC	2 cut(s)	89, 697
BsrDI	GCAATG	2 cut(s)	339, 740
BsrI	ACTGG	2 cut(s)	475, 682
BssECI	CCNNGG	1 cut(s)	155
BssMI	GATC	2 cut(s)	184, 488
BssT1I	CCWWGG	1 cut(s)	155
Bst2UI	CCWGG	1 cut(s)	697
Bst4CI	ACNGT	2 cut(s)	324, 454
Bst6I	CTCTTC	2 cut(s)	384, 678
BstC8I	GCNNGC	1 cut(s)	89
BstDEI	CTNAG	4 cut(s)	21, 216, 464, 492
BstDSI	CCRYGG	1 cut(s)	155
BstF5I	GGATG	4 cut(s)	52, 58, 264, 321
BstFNI	CGCG	1 cut(s)	636
BstHHI	GCGC	1 cut(s)	154
BstKTI	GATC	2 cut(s)	187, 491
BstMAI	GTCTC	2 cut(s)	89, 697
BstMBI	GATC	2 cut(s)	184, 488
BstMWI	GCNNNNNNNGC	2 cut(s)	151, 649
BstNI	CCWGG	1 cut(s)	697
BstNSI	RCATGY	1 cut(s)	563
BstSCI	CCNGG	2 cut(s)	601, 695
BstSLI	GKGCMC	1 cut(s)	567
BstUI	CGCG	1 cut(s)	636
BstV1I	GCAGC	2 cut(s)	220, 529
BstV2I	GAAGAC	1 cut(s)	69
BstX2I	RGATCY	2 cut(s)	184, 488
BstYI	RGATCY	2 cut(s)	184, 488
BsuRI	GGCC	4 cut(s)	68, 160, 402, 666
BtgI	CCRYGG	1 cut(s)	155
BtsCI	GGATG	4 cut(s)	52, 58, 264, 321
BtsIMutI	CAGTG	1 cut(s)	675
Cac8I	GCNNGC	1 cut(s)	89
CaiI	CAGNNNCTG	1 cut(s)	236
CfoI	GCGC	1 cut(s)	154
Cfr13I	GGNCC	2 cut(s)	211, 625
CviAII	CATG	5 cut(s)	156, 398, 560, 622, 771
DdeI	CTNAG	4 cut(s)	21, 216, 464, 492
DpnI	GATC	2 cut(s)	186, 490
DpnII	GATC	2 cut(s)	184, 488
Eam1104I	CTCTTC	2 cut(s)	384, 678
EarI	CTCTTC	2 cut(s)	384, 678
Eco130I	CCWWGG	1 cut(s)	155
Eco147I	AGGCCT	1 cut(s)	666
Eco31I	GGTCTC	2 cut(s)	89, 697
Eco47I	GGWCC	2 cut(s)	211, 625
Eco57I	CTGAAG	1 cut(s)	405
Eco88I	CYCGRG	1 cut(s)	708
EcoRII	CCWGG	1 cut(s)	695
EcoT14I	CCWWGG	1 cut(s)	155
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	155
FaeI	CATG	5 cut(s)	159, 401, 563, 625, 774
FalI	AAGNNNNNCTT	2 cut(s)	120, 152
FatI	CATG	5 cut(s)	155, 397, 559, 621, 770
Fnu4HI	GCNGC	3 cut(s)	177, 234, 518
FokI	GGATG	4 cut(s)	59, 65, 271, 328
Fsp4HI	GCNGC	3 cut(s)	177, 234, 518
GlaI	GCGC	1 cut(s)	153
GluI	GCNGC	3 cut(s)	177, 234, 518
GsaI	CCCAGC	1 cut(s)	488
HaeIII	GGCC	4 cut(s)	68, 160, 402, 666
HapII	CCGG	2 cut(s)	603, 657
HhaI	GCGC	1 cut(s)	154
Hin1II	CATG	5 cut(s)	159, 401, 563, 625, 774
Hin6I	GCGC	1 cut(s)	152
HinP1I	GCGC	1 cut(s)	152
HincII	GTYRAC	1 cut(s)	204
HindII	GTYRAC	1 cut(s)	204
HindIII	AAGCTT	1 cut(s)	494
HinfI	GANTC	2 cut(s)	394, 588
HpaI	GTTAAC	1 cut(s)	204
HpaII	CCGG	2 cut(s)	603, 657
HphI	GGTGA	1 cut(s)	284
Hpy166II	GTNNAC	2 cut(s)	204, 565
Hpy188I	TCNGA	4 cut(s)	172, 283, 329, 385
Hpy188III	TCNNGA	2 cut(s)	193, 245
Hpy8I	GTNNAC	2 cut(s)	204, 565
HpyAV	CCTTC	3 cut(s)	122, 171, 760
HpyCH4III	ACNGT	2 cut(s)	324, 454
HpyCH4IV	ACGT	1 cut(s)	240
HpyCH4V	TGCA	7 cut(s)	4, 56, 145, 565, 580, 652, 740
HpyF10VI	GCNNNNNNNGC	2 cut(s)	151, 649
HpyF3I	CTNAG	4 cut(s)	21, 216, 464, 492
HpySE526I	ACGT	1 cut(s)	240
Hsp92II	CATG	5 cut(s)	159, 401, 563, 625, 774
HspAI	GCGC	1 cut(s)	152
KspAI	GTTAAC	1 cut(s)	204
Kzo9I	GATC	2 cut(s)	184, 488
LmnI	GCTCC	1 cut(s)	329
Lsp1109I	GCAGC	2 cut(s)	220, 529
LweI	GCATC	4 cut(s)	43, 163, 259, 287
MaeII	ACGT	1 cut(s)	240
MaeIII	GTNAC	2 cut(s)	526, 544
MalI	GATC	2 cut(s)	186, 490
MboI	GATC	2 cut(s)	184, 488
MboII	GAAGA	8 cut(s)	69, 274, 358, 398, 401, 470, 657, 695
MflI	RGATCY	2 cut(s)	184, 488
MhlI	GDGCHC	1 cut(s)	567
MluCI	AATT	2 cut(s)	25, 120
MnlI	CCTC	2 cut(s)	566, 679
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	2 cut(s)	323, 393
MseI	TTAA	1 cut(s)	203
MspA1I	CMGCKG	2 cut(s)	233, 520
MspI	CCGG	2 cut(s)	603, 657
MspR9I	CCNGG	2 cut(s)	603, 697
MvaI	CCWGG	1 cut(s)	697
MvnI	CGCG	1 cut(s)	636
MwoI	GCNNNNNNNGC	2 cut(s)	151, 649
NciI	CCSGG	1 cut(s)	603
NcoI	CCATGG	1 cut(s)	155
NdeII	GATC	2 cut(s)	184, 488
NlaIII	CATG	5 cut(s)	159, 401, 563, 625, 774
NlaIV	GGNNCC	1 cut(s)	213
NmuCI	GTSAC	2 cut(s)	526, 544
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	563
PceI	AGGCCT	1 cut(s)	666
PciI	ACATGT	1 cut(s)	559
PcsI	WCGNNNNNNNCGW	1 cut(s)	640
PdmI	GAANNNNTTC	2 cut(s)	323, 393
PfeI	GAWTC	2 cut(s)	394, 588
PkrI	GCNGC	3 cut(s)	178, 235, 519
PscI	ACATGT	1 cut(s)	559
Psp6I	CCWGG	1 cut(s)	695
PspFI	CCCAGC	1 cut(s)	484
PspGI	CCWGG	1 cut(s)	695
PspN4I	GGNNCC	1 cut(s)	213
PspPI	GGNCC	2 cut(s)	211, 625
PstNI	CAGNNNCTG	1 cut(s)	236
PsuI	RGATCY	2 cut(s)	184, 488
PvuII	CAGCTG	2 cut(s)	233, 520
SaqAI	TTAA	1 cut(s)	203
SatI	GCNGC	3 cut(s)	177, 234, 518
Sau3AI	GATC	2 cut(s)	184, 488
Sau96I	GGNCC	2 cut(s)	211, 625
ScrFI	CCNGG	2 cut(s)	603, 697
SduI	GDGCHC	1 cut(s)	567
SetI	ASST	9 cut(s)	235, 243, 366, 498, 522, 630, 694, 753, 761
SfaNI	GCATC	4 cut(s)	43, 163, 259, 287
SinI	GGWCC	2 cut(s)	211, 625
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
Sse9I	AATT	2 cut(s)	25, 120
SseBI	AGGCCT	1 cut(s)	666
SsiI	CCGC	2 cut(s)	176, 636
StuI	AGGCCT	1 cut(s)	666
StyD4I	CCNGG	2 cut(s)	601, 695
StyI	CCWWGG	1 cut(s)	155
TaaI	ACNGT	2 cut(s)	324, 454
TaiI	ACGT	1 cut(s)	243
TaqI	TCGA	1 cut(s)	83
TaqII	GACCGA	2 cut(s)	113, 532
TasI	AATT	2 cut(s)	25, 120
TauI	GCSGC	1 cut(s)	179
TfiI	GAWTC	2 cut(s)	394, 588
Tru1I	TTAA	1 cut(s)	203
Tru9I	TTAA	1 cut(s)	203
TscAI	CASTG	1 cut(s)	682
TseFI	GTSAC	2 cut(s)	526, 544
TseI	GCWGC	2 cut(s)	233, 517
Tsp45I	GTSAC	2 cut(s)	526, 544
TspDTI	ATGAA	5 cut(s)	69, 275, 332, 350, 386
TspRI	CASTG	1 cut(s)	682
VneI	GTGCAC	1 cut(s)	563
VpaK11BI	GGWCC	2 cut(s)	211, 625
XapI	RAATTY	1 cut(s)	25
XceI	RCATGY	1 cut(s)	563
XmnI	GAANNNNTTC	2 cut(s)	323, 393
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.