Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0008188

Physical Location & Seq

Genomic Coordinates Reverse (-)

67497946 .. 67499588

Gene Structure 1643 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG466100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGATTGCTGCGAGACCGAGAAAGGGATATTTGACTCAATTGTAGAAGGAAAACTTGACTTGCATAGTGCGCCATGGCCTTCTATATCTGATGCGGCAAAGGATCTCATCAGGAAAATGTTAACAATGGACCCTAAGAAAAGGATTACAGCTGCTGAAGTTCTTGAGCATCAATGGATGAAGAAAGATGGTGAAGCATCTGACAAACCTATTGATAGTGCTGTGCTGATTAGGATGAAACAGTTCAGAGCAATGAACAAGTTGAAGAAACTTGCTCTAAAGGTCATAGCAGAAACGCTTTCTGAAGAAGAGATTCATGGCCTGAAACAAATGTTCAACAACATTGACACAGATGGTAGTGGTAATATCACAGTTGAAGAACTAAGAACTGGATTGTCAAGGCTGGGATCTAAGCTTACAGAAGCAGAAATAAAGCAGCTGATGGATGCTGCTGACATAGACAATAATGGGACTATTGATTACACTGAATTCATTACTGCAACCATGCATCGACACAAACTGGAGAAGGAAGAAAACTTGCACAAGGCTTTCCTTTACTTTGACAAGGATCAGAGCGGGTTTATCACAAGAGATGAGCTAAGACAAGCAATGACTGAATATGGGATGGGGGATGAGGCTACGATAGATGAAGTCCTTGAAGATGTGGATACTGATAAAGATGGGAGAATCAATTATGAGGAGTTCGTAGCCATGATGACACGGGGAGTTGCAGATTACGATGATAAACCAGATAGGGTGATTGTTCTACCTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0047484 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0080134 GO:0097305 GO:0097306 GO:0098542 GO:0140096 GO:1901000 GO:1901002 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7 Pkinase

Protein Analysis

258

Amino Acids

29.34

Weight (kDa)

4.77

Isoelectric Point (pI)

34.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	14 - 60	8.5e-09	Protein kinase domain
EF-hand_7	PF13499	108 - 168	5.8e-15	EF-hand domain pair
EF-hand_1	PF00036	108 - 134	2e-06	EF hand domain
EF-hand_6	PF13405	108 - 136	3.8e-06	EF-hand domain
EF-hand_5	PF13202	108 - 130	3.2e-06	EF hand
EF-hand_8	PF13833	120 - 167	3.4e-08	EF-hand domain pair
EF-hand_7	PF13499	177 - 240	1.1e-16	EF-hand domain pair
EF-hand_1	PF00036	180 - 206	4.5e-07	EF hand domain
EF-hand_6	PF13405	180 - 208	1.2e-07	EF-hand domain
EF-hand_8	PF13833	192 - 241	1.5e-06	EF-hand domain pair
EF-hand_1	PF00036	215 - 241	8.1e-08	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0008188)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76040 AT1G76040 AT1G76040 AT1G76040
fragaria_vesca	FvH4_2g38010 FvH4_2g38010
malus_domestica	MD15G1007200.v1.1
prunus_persica	Prupe.1G360100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0303601
rosa_laevigata	RLG00000011069 RLG00000011734
rosa_multiflora	Rmu_ssc0000114.1_g000023
rosa_roxburghii	Rroxscaffold_7G00164590
rosa_rugosa	Rorug06G0257300 Rorug06G0322800
rosa_samantha	Rh6AG437100 Rh6BG377600 Rh6BG377700 Rh6BG466100 Rh6CG449200 Rh6DG370300 Rh6DG435900
rosa_wichuraiana	Rw6G037840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	576
AciI	CCGC	2 cut(s)	95, 576
AclWI	GGATC	3 cut(s)	111, 415, 576
AcsI	RAATTY	1 cut(s)	488
AcuI	CTGAAG	2 cut(s)	177, 324
AfiI	CCNNNNNNNGG	1 cut(s)	24
AgsI	TTSAA	4 cut(s)	265, 337, 377, 659
AluBI	AGCT	4 cut(s)	152, 415, 439, 598
AluI	AGCT	4 cut(s)	152, 415, 439, 598
Alw26I	GTCTC	1 cut(s)	8
AlwI	GGATC	3 cut(s)	111, 415, 576
AlwNI	CAGNNNCTG	1 cut(s)	155
AoxI	GGCC	2 cut(s)	77, 319
ApeKI	GCWGC	4 cut(s)	9, 152, 436, 449
ApoI	RAATTY	1 cut(s)	488
Asp700I	GAANNNNTTC	2 cut(s)	242, 312
AspLEI	GCGC	1 cut(s)	73
AspS9I	GGNCC	1 cut(s)	130
AsuHPI	GGTGA	2 cut(s)	203, 769
AvaII	GGWCC	1 cut(s)	130
BbvI	GCAGC	3 cut(s)	139, 436, 448
BccI	CCATC	5 cut(s)	182, 347, 436, 619, 674
BciVI	GTATCC	1 cut(s)	661
BcoDI	GTCTC	1 cut(s)	8
BfuI	GTATCC	1 cut(s)	661
BisI	GCNGC	5 cut(s)	10, 96, 153, 437, 450
BlsI	GCNGC	5 cut(s)	11, 97, 154, 438, 451
Bme18I	GGWCC	1 cut(s)	130
BmgT120I	GGNCC	1 cut(s)	130
BmiI	GGNNCC	1 cut(s)	132
BmsI	GCATC	5 cut(s)	82, 178, 206, 436, 517
BpmI	CTGGAG	1 cut(s)	542
BpuEI	CTTGAG	1 cut(s)	185
BsaI	GGTCTC	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	74
Bsc4I	CCNNNNNNNGG	1 cut(s)	24
Bse1I	ACTGG	2 cut(s)	394, 525
Bse3DI	GCAATG	2 cut(s)	258, 615
BseDI	CCNNGG	1 cut(s)	74
BseGI	GGATG	5 cut(s)	183, 240, 451, 630, 637
BseLI	CCNNNNNNNGG	1 cut(s)	24
BseMI	GCAATG	2 cut(s)	258, 615
BseNI	ACTGG	2 cut(s)	394, 525
BseRI	GAGGAG	1 cut(s)	713
BseXI	GCAGC	3 cut(s)	139, 436, 448
BseYI	CCCAGC	1 cut(s)	403
BshFI	GGCC	2 cut(s)	79, 321
BslFI	GGGAC	1 cut(s)	484
BslI	CCNNNNNNNGG	1 cut(s)	24
BsmAI	GTCTC	1 cut(s)	8
BsmFI	GGGAC	1 cut(s)	484
BsnI	GGCC	2 cut(s)	79, 321
Bso31I	GGTCTC	1 cut(s)	8
Bsp143I	GATC	3 cut(s)	103, 407, 568
Bsp19I	CCATGG	1 cut(s)	74
BspACI	CCGC	2 cut(s)	95, 576
BspANI	GGCC	2 cut(s)	79, 321
BspLI	GGNNCC	1 cut(s)	132
BspPI	GGATC	3 cut(s)	111, 415, 576
BspTNI	GGTCTC	1 cut(s)	8
BsrBI	CCGCTC	1 cut(s)	576
BsrDI	GCAATG	2 cut(s)	258, 615
BsrI	ACTGG	2 cut(s)	394, 525
BssECI	CCNNGG	1 cut(s)	74
BssMI	GATC	3 cut(s)	103, 407, 568
BssT1I	CCWWGG	1 cut(s)	74
Bst4CI	ACNGT	2 cut(s)	243, 373
Bst6I	CTCTTC	1 cut(s)	303
BstDEI	CTNAG	4 cut(s)	135, 383, 411, 599
BstDSI	CCRYGG	1 cut(s)	74
BstF5I	GGATG	5 cut(s)	183, 240, 451, 630, 637
BstHHI	GCGC	1 cut(s)	73
BstKTI	GATC	3 cut(s)	106, 410, 571
BstMAI	GTCTC	1 cut(s)	8
BstMBI	GATC	3 cut(s)	103, 407, 568
BstMWI	GCNNNNNNNGC	1 cut(s)	70
BstV1I	GCAGC	3 cut(s)	139, 436, 448
BstX2I	RGATCY	2 cut(s)	103, 407
BstYI	RGATCY	2 cut(s)	103, 407
BsuI	GTATCC	1 cut(s)	661
BsuRI	GGCC	2 cut(s)	79, 321
BtgI	CCRYGG	1 cut(s)	74
BtsCI	GGATG	5 cut(s)	183, 240, 451, 630, 637
BtsIMutI	CAGTG	1 cut(s)	483
CaiI	CAGNNNCTG	1 cut(s)	155
CfoI	GCGC	1 cut(s)	73
Cfr13I	GGNCC	1 cut(s)	130
CviAII	CATG	4 cut(s)	75, 317, 505, 712
DdeI	CTNAG	4 cut(s)	135, 383, 411, 599
DpnI	GATC	3 cut(s)	105, 409, 570
DpnII	GATC	3 cut(s)	103, 407, 568
Eam1104I	CTCTTC	1 cut(s)	303
EarI	CTCTTC	1 cut(s)	303
Eco130I	CCWWGG	1 cut(s)	74
Eco31I	GGTCTC	1 cut(s)	8
Eco47I	GGWCC	1 cut(s)	130
Eco57I	CTGAAG	2 cut(s)	177, 324
EcoRI	GAATTC	1 cut(s)	488
EcoT14I	CCWWGG	1 cut(s)	74
EcoT22I	ATGCAT	1 cut(s)	510
ErhI	CCWWGG	1 cut(s)	74
FaeI	CATG	4 cut(s)	78, 320, 508, 715
FalI	AAGNNNNNCTT	2 cut(s)	39, 71
FaqI	GGGAC	1 cut(s)	484
FatI	CATG	4 cut(s)	74, 316, 504, 711
FauI	CCCGC	1 cut(s)	569
Fnu4HI	GCNGC	5 cut(s)	10, 96, 153, 437, 450
FokI	GGATG	5 cut(s)	190, 247, 458, 637, 644
Fsp4HI	GCNGC	5 cut(s)	10, 96, 153, 437, 450
GlaI	GCGC	1 cut(s)	72
GluI	GCNGC	5 cut(s)	10, 96, 153, 437, 450
GsaI	CCCAGC	1 cut(s)	407
GsuI	CTGGAG	1 cut(s)	542
HaeIII	GGCC	2 cut(s)	79, 321
HhaI	GCGC	1 cut(s)	73
Hin1II	CATG	4 cut(s)	78, 320, 508, 715
Hin6I	GCGC	1 cut(s)	71
HinP1I	GCGC	1 cut(s)	71
HincII	GTYRAC	1 cut(s)	123
HindII	GTYRAC	1 cut(s)	123
HindIII	AAGCTT	1 cut(s)	413
HinfI	GANTC	3 cut(s)	35, 313, 687
HpaI	GTTAAC	1 cut(s)	123
HphI	GGTGA	2 cut(s)	203, 769
Hpy166II	GTNNAC	1 cut(s)	123
Hpy188I	TCNGA	5 cut(s)	91, 202, 248, 304, 573
Hpy188III	TCNNGA	2 cut(s)	112, 164
Hpy8I	GTNNAC	1 cut(s)	123
HpyAV	CCTTC	3 cut(s)	41, 90, 520
HpyCH4III	ACNGT	2 cut(s)	243, 373
HpyCH4V	TGCA	5 cut(s)	64, 500, 508, 541, 731
HpyF10VI	GCNNNNNNNGC	1 cut(s)	70
HpyF3I	CTNAG	4 cut(s)	135, 383, 411, 599
Hsp92II	CATG	4 cut(s)	78, 320, 508, 715
HspAI	GCGC	1 cut(s)	71
KspAI	GTTAAC	1 cut(s)	123
Kzo9I	GATC	3 cut(s)	103, 407, 568
LpnPI	CCDG	6 cut(s)	97, 335, 375, 389, 506, 762
Lsp1109I	GCAGC	3 cut(s)	139, 436, 448
LweI	GCATC	5 cut(s)	82, 178, 206, 436, 517
MalI	GATC	3 cut(s)	105, 409, 570
MbiI	CCGCTC	1 cut(s)	576
MboI	GATC	3 cut(s)	103, 407, 568
MboII	GAAGA	7 cut(s)	193, 277, 317, 320, 389, 542, 671
MfeI	CAATTG	1 cut(s)	39
MflI	RGATCY	2 cut(s)	103, 407
MluCI	AATT	3 cut(s)	39, 488, 691
MlyI	GAGTC	1 cut(s)	29
MnlI	CCTC	2 cut(s)	628, 691
Mph1103I	ATGCAT	1 cut(s)	510
MroXI	GAANNNNTTC	2 cut(s)	242, 312
MseI	TTAA	1 cut(s)	122
MspA1I	CMGCKG	2 cut(s)	152, 439
MunI	CAATTG	1 cut(s)	39
MwoI	GCNNNNNNNGC	1 cut(s)	70
NcoI	CCATGG	1 cut(s)	74
NdeII	GATC	3 cut(s)	103, 407, 568
NlaIII	CATG	4 cut(s)	78, 320, 508, 715
NlaIV	GGNNCC	1 cut(s)	132
NsiI	ATGCAT	1 cut(s)	510
PdmI	GAANNNNTTC	2 cut(s)	242, 312
PfeI	GAWTC	2 cut(s)	313, 687
PkrI	GCNGC	5 cut(s)	11, 97, 154, 438, 451
PleI	GAGTC	1 cut(s)	29
PpsI	GAGTC	1 cut(s)	29
PspFI	CCCAGC	1 cut(s)	403
PspN4I	GGNNCC	1 cut(s)	132
PspPI	GGNCC	1 cut(s)	130
PstNI	CAGNNNCTG	1 cut(s)	155
PsuI	RGATCY	2 cut(s)	103, 407
PvuII	CAGCTG	2 cut(s)	152, 439
SaqAI	TTAA	1 cut(s)	122
SatI	GCNGC	5 cut(s)	10, 96, 153, 437, 450
Sau3AI	GATC	3 cut(s)	103, 407, 568
Sau96I	GGNCC	1 cut(s)	130
SchI	GAGTC	1 cut(s)	29
SetI	ASST	7 cut(s)	154, 211, 285, 417, 441, 600, 772
SfaNI	GCATC	5 cut(s)	82, 178, 206, 436, 517
SinI	GGWCC	1 cut(s)	130
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	3 cut(s)	39, 488, 691
SsiI	CCGC	2 cut(s)	95, 576
StyI	CCWWGG	1 cut(s)	74
TaaI	ACNGT	2 cut(s)	243, 373
TaqI	TCGA	1 cut(s)	511
TaqII	GACCGA	1 cut(s)	32
TasI	AATT	3 cut(s)	39, 488, 691
TauI	GCSGC	1 cut(s)	98
TfiI	GAWTC	2 cut(s)	313, 687
Tru1I	TTAA	1 cut(s)	122
Tru9I	TTAA	1 cut(s)	122
TscAI	CASTG	1 cut(s)	490
TseI	GCWGC	4 cut(s)	9, 152, 436, 449
TspDTI	ATGAA	6 cut(s)	194, 251, 269, 305, 481, 663
TspRI	CASTG	1 cut(s)	490
VpaK11BI	GGWCC	1 cut(s)	130
XapI	RAATTY	1 cut(s)	488
XmnI	GAANNNNTTC	2 cut(s)	242, 312
Zsp2I	ATGCAT	1 cut(s)	510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.