Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0008188

Physical Location & Seq

Genomic Coordinates Forward (+)

60655968 .. 60656369

Gene Structure 402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG377600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGGACTCTGTTTCACAAAATCCCACACCCATGATACCCCAATCTCTTCATCATCAGAATTACCACCTCACCACTTCCAACAAACACAACCCAACCCGTTTCACCAGCCAGCTCCACCCAAACCCAGGCCCTACTCCGGAGGCTCTTTCGGCAAGAGCCCCTCGTCCTCCCAAATCGGACCAATTCTGGGCAAGCCTTACGCCGACGTAAATTCCGTTTACACCCTCGAGAAGGAGCTGGGCCGCGGCCAGTTCAGCGTCACGCGTCTGTGCACGGAGAAATCCACGGGCCGAAAATACGCCTGCAAGTCCATATCGTGCAAAAAAACTCGTGACCATTCAGGACTTGCGCAGAGAGGTTCTGATTCTGGAGCACTTAACGGGCCAACCCAATATAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0047484 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0080134 GO:0097305 GO:0097306 GO:0098542 GO:0140096 GO:1901000 GO:1901002 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7 Pkinase

Protein Analysis

133

Amino Acids

14.36

Weight (kDa)

9.54

Isoelectric Point (pI)

42.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008188)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76040 AT1G76040 AT1G76040 AT1G76040
fragaria_vesca	FvH4_2g38010 FvH4_2g38010
malus_domestica	MD15G1007200.v1.1
prunus_persica	Prupe.1G360100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0303601
rosa_laevigata	RLG00000011069 RLG00000011734
rosa_multiflora	Rmu_ssc0000114.1_g000023
rosa_roxburghii	Rroxscaffold_7G00164590
rosa_rugosa	Rorug06G0257300 Rorug06G0322800
rosa_samantha	Rh6AG437100 Rh6BG377600 Rh6BG377700 Rh6BG466100 Rh6CG449200 Rh6DG370300 Rh6DG435900
rosa_wichuraiana	Rw6G037840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	351
AccII	CGCG	2 cut(s)	246, 265
AccIII	TCCGGA	1 cut(s)	137
AciI	CCGC	2 cut(s)	244, 246
AcoI	YGGCCR	1 cut(s)	247
AcsI	RAATTY	1 cut(s)	211
AfiI	CCNNNNNNNGG	4 cut(s)	126, 137, 188, 232
AflIII	ACRYGT	1 cut(s)	263
AjnI	CCWGG	1 cut(s)	125
AluBI	AGCT	2 cut(s)	113, 238
AluI	AGCT	2 cut(s)	113, 238
Alw21I	GWGCWC	2 cut(s)	275, 376
Alw44I	GTGCAC	1 cut(s)	271
Ama87I	CYCGRG	1 cut(s)	227
Aor13HI	TCCGGA	1 cut(s)	137
AoxI	GGCC	5 cut(s)	128, 241, 247, 289, 383
ApaLI	GTGCAC	1 cut(s)	271
ApoI	RAATTY	1 cut(s)	211
AspLEI	GCGC	1 cut(s)	352
AspS9I	GGNCC	5 cut(s)	129, 179, 241, 289, 383
AsuHPI	GGTGA	2 cut(s)	62, 95
AvaI	CYCGRG	1 cut(s)	227
AvaII	GGWCC	1 cut(s)	179
BaeGI	GKGCMC	1 cut(s)	275
BanII	GRGCYC	1 cut(s)	161
BauI	CACGAG	1 cut(s)	330
Bbv12I	GWGCWC	2 cut(s)	275, 376
BciT130I	CCWGG	1 cut(s)	127
BisI	GCNGC	2 cut(s)	244, 247
BlsI	GCNGC	2 cut(s)	245, 248
Bme1390I	CCNGG	1 cut(s)	127
Bme18I	GGWCC	1 cut(s)	179
BmeT110I	CYCGRG	1 cut(s)	227
BmgT120I	GGNCC	5 cut(s)	129, 179, 241, 289, 383
BmrFI	CCNGG	1 cut(s)	127
BpmI	CTGGAG	1 cut(s)	390
BsaJI	CCNNGG	3 cut(s)	125, 244, 285
BsaWI	WCCGGW	1 cut(s)	137
Bsc4I	CCNNNNNNNGG	4 cut(s)	126, 137, 188, 232
Bse1I	ACTGG	1 cut(s)	250
BseAI	TCCGGA	1 cut(s)	137
BseBI	CCWGG	1 cut(s)	127
BseDI	CCNNGG	3 cut(s)	125, 244, 285
BseLI	CCNNNNNNNGG	4 cut(s)	126, 137, 188, 232
BseNI	ACTGG	1 cut(s)	250
BseSI	GKGCMC	1 cut(s)	275
BseYI	CCCAGC	1 cut(s)	238
Bsh1236I	CGCG	2 cut(s)	246, 265
BshFI	GGCC	5 cut(s)	130, 243, 249, 291, 385
BsiHKAI	GWGCWC	2 cut(s)	275, 376
BsiHKCI	CYCGRG	1 cut(s)	227
BsiSI	CCGG	1 cut(s)	138
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	4 cut(s)	126, 137, 188, 232
BsmFI	GGGAC	1 cut(s)	18
BsnI	GGCC	5 cut(s)	130, 243, 249, 291, 385
BsoBI	CYCGRG	1 cut(s)	227
Bsp1286I	GDGCHC	3 cut(s)	161, 275, 376
Bsp13I	TCCGGA	1 cut(s)	137
BspACI	CCGC	2 cut(s)	244, 246
BspANI	GGCC	5 cut(s)	130, 243, 249, 291, 385
BspEI	TCCGGA	1 cut(s)	137
BspFNI	CGCG	2 cut(s)	246, 265
BsrI	ACTGG	1 cut(s)	250
BssECI	CCNNGG	3 cut(s)	125, 244, 285
BssSI	CACGAG	1 cut(s)	330
Bst2BI	CACGAG	1 cut(s)	330
Bst2UI	CCWGG	1 cut(s)	127
Bst6I	CTCTTC	1 cut(s)	52
BstC8I	GCNNGC	3 cut(s)	111, 194, 304
BstDSI	CCRYGG	2 cut(s)	244, 285
BstENI	CCTNNNNNAGG	1 cut(s)	230
BstFNI	CGCG	2 cut(s)	246, 265
BstHHI	GCGC	1 cut(s)	352
BstMWI	GCNNNNNNNGC	2 cut(s)	150, 255
BstNI	CCWGG	1 cut(s)	127
BstSCI	CCNGG	1 cut(s)	125
BstSLI	GKGCMC	1 cut(s)	275
BstUI	CGCG	2 cut(s)	246, 265
BsuRI	GGCC	5 cut(s)	130, 243, 249, 291, 385
BtgI	CCRYGG	2 cut(s)	244, 285
Cac8I	GCNNGC	3 cut(s)	111, 194, 304
CfoI	GCGC	1 cut(s)	352
Cfr13I	GGNCC	5 cut(s)	129, 179, 241, 289, 383
Cfr42I	CCGCGG	1 cut(s)	247
CseI	GACGC	2 cut(s)	247, 254
CviAII	CATG	1 cut(s)	32
EaeI	YGGCCR	1 cut(s)	247
Eam1104I	CTCTTC	1 cut(s)	52
EarI	CTCTTC	1 cut(s)	52
Eco24I	GRGCYC	1 cut(s)	161
Eco47I	GGWCC	1 cut(s)	179
Eco88I	CYCGRG	1 cut(s)	227
EcoNI	CCTNNNNNAGG	1 cut(s)	230
EcoO109I	RGGNCCY	1 cut(s)	129
EcoRII	CCWGG	1 cut(s)	125
EcoT38I	GRGCYC	1 cut(s)	161
FaeI	CATG	1 cut(s)	35
FaiI	YATR	3 cut(s)	33, 314, 396
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	1 cut(s)	31
Fnu4HI	GCNGC	2 cut(s)	244, 247
FriOI	GRGCYC	1 cut(s)	161
Fsp4HI	GCNGC	2 cut(s)	244, 247
FspI	TGCGCA	1 cut(s)	351
GlaI	GCGC	1 cut(s)	351
GluI	GCNGC	2 cut(s)	244, 247
GsaI	CCCAGC	1 cut(s)	242
GsuI	CTGGAG	1 cut(s)	390
HaeIII	GGCC	5 cut(s)	130, 243, 249, 291, 385
HapII	CCGG	1 cut(s)	138
HgaI	GACGC	2 cut(s)	247, 254
HhaI	GCGC	1 cut(s)	352
Hin1II	CATG	1 cut(s)	35
Hin6I	GCGC	1 cut(s)	350
HinP1I	GCGC	1 cut(s)	350
HinfI	GANTC	2 cut(s)	6, 365
HpaII	CCGG	1 cut(s)	138
HphI	GGTGA	2 cut(s)	62, 95
Hpy166II	GTNNAC	2 cut(s)	220, 273
Hpy188I	TCNGA	3 cut(s)	58, 179, 364
Hpy188III	TCNNGA	5 cut(s)	138, 229, 332, 342, 369
Hpy8I	GTNNAC	2 cut(s)	220, 273
Hpy99I	CGWCG	1 cut(s)	209
HpyAV	CCTTC	1 cut(s)	226
HpyCH4IV	ACGT	1 cut(s)	207
HpyCH4V	TGCA	3 cut(s)	273, 306, 321
HpyF10VI	GCNNNNNNNGC	2 cut(s)	150, 255
HpySE526I	ACGT	1 cut(s)	207
Hsp92II	CATG	1 cut(s)	35
HspAI	GCGC	1 cut(s)	350
Kpn2I	TCCGGA	1 cut(s)	137
KspI	CCGCGG	1 cut(s)	247
LmnI	GCTCC	3 cut(s)	118, 235, 371
MaeII	ACGT	1 cut(s)	207
MaeIII	GTNAC	2 cut(s)	259, 332
MboII	GAAGA	1 cut(s)	39
MhlI	GDGCHC	3 cut(s)	161, 275, 376
MluCI	AATT	3 cut(s)	59, 183, 211
MluI	ACGCGT	1 cut(s)	263
MmeI	TCCRAC	1 cut(s)	103
MnlI	CCTC	6 cut(s)	78, 134, 172, 178, 236, 350
MroI	TCCGGA	1 cut(s)	137
MseI	TTAA	1 cut(s)	378
MslI	CAYNNNNRTG	1 cut(s)	30
MspA1I	CMGCKG	1 cut(s)	246
MspI	CCGG	1 cut(s)	138
MspR9I	CCNGG	1 cut(s)	127
MvaI	CCWGG	1 cut(s)	127
MvnI	CGCG	2 cut(s)	246, 265
MwoI	GCNNNNNNNGC	2 cut(s)	150, 255
NlaIII	CATG	1 cut(s)	35
NmuCI	GTSAC	2 cut(s)	259, 332
NsbI	TGCGCA	1 cut(s)	351
PaeR7I	CTCGAG	1 cut(s)	227
PcsI	WCGNNNNNNNCGW	1 cut(s)	213
PfeI	GAWTC	1 cut(s)	365
PkrI	GCNGC	2 cut(s)	245, 248
Psp6I	CCWGG	1 cut(s)	125
PspFI	CCCAGC	1 cut(s)	238
PspGI	CCWGG	1 cut(s)	125
PspPI	GGNCC	5 cut(s)	129, 179, 241, 289, 383
RseI	CAYNNNNRTG	1 cut(s)	30
SacII	CCGCGG	1 cut(s)	247
SaqAI	TTAA	1 cut(s)	378
SatI	GCNGC	2 cut(s)	244, 247
Sau96I	GGNCC	5 cut(s)	129, 179, 241, 289, 383
ScrFI	CCNGG	1 cut(s)	127
SduI	GDGCHC	3 cut(s)	161, 275, 376
SetI	ASST	5 cut(s)	70, 115, 210, 240, 361
Sfr274I	CTCGAG	1 cut(s)	227
Sfr303I	CCGCGG	1 cut(s)	247
SgrBI	CCGCGG	1 cut(s)	247
SinI	GGWCC	1 cut(s)	179
SlaI	CTCGAG	1 cut(s)	227
SmiMI	CAYNNNNRTG	1 cut(s)	30
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
Sse9I	AATT	3 cut(s)	59, 183, 211
SsiI	CCGC	2 cut(s)	244, 246
StyD4I	CCNGG	1 cut(s)	125
TaiI	ACGT	1 cut(s)	210
TaqI	TCGA	1 cut(s)	228
TasI	AATT	3 cut(s)	59, 183, 211
TauI	GCSGC	2 cut(s)	246, 249
TfiI	GAWTC	1 cut(s)	365
Tru1I	TTAA	1 cut(s)	378
Tru9I	TTAA	1 cut(s)	378
TseFI	GTSAC	2 cut(s)	259, 332
Tsp45I	GTSAC	2 cut(s)	259, 332
TspDTI	ATGAA	1 cut(s)	39
TspGWI	ACGGA	2 cut(s)	205, 290
VneI	GTGCAC	1 cut(s)	271
VpaK11BI	GGWCC	1 cut(s)	179
XagI	CCTNNNNNAGG	1 cut(s)	230
XapI	RAATTY	1 cut(s)	211
XhoI	CTCGAG	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.